RNA–Protein interactions for RNA: ENST00000541953.5

CLSTN3-213, Transcript of calsyntenin 3, humanhuman

TSL 5

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-213ENST00000541953 CC2D1BQ5T0F9 858 aaKnown RBP21.05■□□□□ 0.96
CLSTN3-213ENST00000541953 C9orf131Q5VYM1 1079 aa21.05■□□□□ 0.96
CLSTN3-213ENST00000541953 BCL2L12Q9HB09 334 aa21.05■□□□□ 0.96
CLSTN3-213ENST00000541953 COL15A1P39059 1388 aa21.04■□□□□ 0.96
CLSTN3-213ENST00000541953 DLEC1Q9Y238 1755 aa21.04■□□□□ 0.96
CLSTN3-213ENST00000541953 SIPA1L3O60292 1781 aaPredicted RBP21.03■□□□□ 0.96
CLSTN3-213ENST00000541953 PIM2Q9P1W9 311 aa21.03■□□□□ 0.96
CLSTN3-213ENST00000541953 CARMIL3Q8ND23 1372 aa21.02■□□□□ 0.96
CLSTN3-213ENST00000541953 CNGB1Q14028 1251 aaPredicted RBP21.01■□□□□ 0.95
CLSTN3-213ENST00000541953 NFIXQ14938 502 aa21.01■□□□□ 0.95
CLSTN3-213ENST00000541953 DALRD3Q5D0E6 543 aaKnown RBP21.01■□□□□ 0.95
CLSTN3-213ENST00000541953 DIAPH1O60610 1272 aaKnown RBP21■□□□□ 0.95
CLSTN3-213ENST00000541953 PRELPP51888 382 aa21■□□□□ 0.95
CLSTN3-213ENST00000541953 IFFO2Q5TF58 517 aa21■□□□□ 0.95
CLSTN3-213ENST00000541953 WDR90Q96KV7 1748 aa21■□□□□ 0.95
CLSTN3-213ENST00000541953 ANKRD31Q8N7Z5 1873 aa20.99■□□□□ 0.95
CLSTN3-213ENST00000541953 PCNTO95613 3336 aa20.99■□□□□ 0.95
CLSTN3-213ENST00000541953 ZPR1O75312 459 aa20.99■□□□□ 0.95
CLSTN3-213ENST00000541953 TOMM70O94826 608 aa20.99■□□□□ 0.95
CLSTN3-213ENST00000541953 RASSF7Q02833 373 aa20.99■□□□□ 0.95
CLSTN3-213ENST00000541953 NARFQ9UHQ1 456 aa20.99■□□□□ 0.95
CLSTN3-213ENST00000541953 SCN7AQ01118 1682 aa20.99■□□□□ 0.95
CLSTN3-213ENST00000541953 RNF181Q9P0P0 153 aa20.98■□□□□ 0.95
CLSTN3-213ENST00000541953 COL11A2P13942 1736 aaPredicted RBP20.98■□□□□ 0.95
CLSTN3-213ENST00000541953 HTRA3P83110 453 aa20.97■□□□□ 0.95
CLSTN3-213ENST00000541953 TNRC6CQ9HCJ0 1690 aaKnown RBP20.96■□□□□ 0.95
CLSTN3-213ENST00000541953 CANXP27824 592 aaKnown RBP20.96■□□□□ 0.95
CLSTN3-213ENST00000541953 DNAJC5GQ8N7S2 189 aa20.96■□□□□ 0.95
CLSTN3-213ENST00000541953 TIAM2Q8IVF5 1701 aa20.95■□□□□ 0.94
CLSTN3-213ENST00000541953 IL17REQ8NFR9 667 aa20.95■□□□□ 0.94
CLSTN3-213ENST00000541953 SERPINB2P05120 415 aa20.94■□□□□ 0.94
CLSTN3-213ENST00000541953 ZNF496Q96IT1 587 aaPredicted RBP20.94■□□□□ 0.94
CLSTN3-213ENST00000541953 CCDC88AQ3V6T2 1871 aa20.94■□□□□ 0.94
CLSTN3-213ENST00000541953 APLP1P51693 650 aa20.93■□□□□ 0.94
CLSTN3-213ENST00000541953 VSIG10Q8N0Z9 540 aa20.93■□□□□ 0.94
CLSTN3-213ENST00000541953 U2SURPO15042 1029 aaKnown RBP20.92■□□□□ 0.94
CLSTN3-213ENST00000541953 EIF5P55010 431 aaKnown RBP20.92■□□□□ 0.94
CLSTN3-213ENST00000541953 BICDL1Q6ZP65 573 aa20.92■□□□□ 0.94
CLSTN3-213ENST00000541953 KCNQ3O43525 872 aa20.91■□□□□ 0.94
CLSTN3-213ENST00000541953 CCDC24Q8N4L8 307 aa20.91■□□□□ 0.94
CLSTN3-213ENST00000541953 RBM46Q8TBY0 533 aaKnown RBP20.91■□□□□ 0.94
CLSTN3-213ENST00000541953 RRAGCQ9HB90 399 aa20.91■□□□□ 0.94
CLSTN3-213ENST00000541953 NPC1L1Q9UHC9 1359 aa20.91■□□□□ 0.94
CLSTN3-213ENST00000541953 HEG1Q9ULI3 1381 aa20.91■□□□□ 0.94
CLSTN3-213ENST00000541953 BCORQ6W2J9 1755 aa20.9■□□□□ 0.94
CLSTN3-213ENST00000541953 TBC1D9BQ66K14 1250 aa20.9■□□□□ 0.94
CLSTN3-213ENST00000541953 PHACTR3Q96KR7 559 aa20.9■□□□□ 0.94
CLSTN3-213ENST00000541953 ZNF790Q6PG37 636 aa20.89■□□□□ 0.93
CLSTN3-213ENST00000541953 C2CD5Q86YS7 1000 aa20.89■□□□□ 0.93
CLSTN3-213ENST00000541953 CEMIPQ8WUJ3 1361 aa20.88■□□□□ 0.93
CLSTN3-213ENST00000541953 NFKBIEO00221 500 aa20.88■□□□□ 0.93
CLSTN3-213ENST00000541953 TTC5Q8N0Z6 440 aa20.88■□□□□ 0.93
CLSTN3-213ENST00000541953 TBC1D2BQ9UPU7 963 aa20.88■□□□□ 0.93
CLSTN3-213ENST00000541953 CACNA1SQ13698 1873 aa20.88■□□□□ 0.93
CLSTN3-213ENST00000541953 GNAT3A8MTJ3 354 aa20.87■□□□□ 0.93
CLSTN3-213ENST00000541953 ZNF330Q9Y3S2 320 aaPredicted RBP20.87■□□□□ 0.93
CLSTN3-213ENST00000541953 KDM2BQ8NHM5 1336 aa20.86■□□□□ 0.93
CLSTN3-213ENST00000541953 A1BGP04217 495 aa20.86■□□□□ 0.93
CLSTN3-213ENST00000541953 PIP4K2AP48426 406 aaPredicted RBP20.86■□□□□ 0.93
CLSTN3-213ENST00000541953 RSPH6AQ9H0K4 717 aa20.86■□□□□ 0.93
CLSTN3-213ENST00000541953 FER1L6Q2WGJ9 1857 aa20.86■□□□□ 0.93
CLSTN3-213ENST00000541953 PRAMEF22A3QJZ6 481 aa20.85■□□□□ 0.93
CLSTN3-213ENST00000541953 STARD3NLO95772 234 aa20.85■□□□□ 0.93
CLSTN3-213ENST00000541953 TEFQ10587 303 aa20.85■□□□□ 0.93
CLSTN3-213ENST00000541953 PRR5LQ6MZQ0 368 aa20.85■□□□□ 0.93
CLSTN3-213ENST00000541953 TTLL6Q8N841 843 aa20.85■□□□□ 0.93
CLSTN3-213ENST00000541953 GAS2L2Q8NHY3 880 aa20.85■□□□□ 0.93
CLSTN3-213ENST00000541953 PRKAR2BP31323 418 aa20.84■□□□□ 0.93
CLSTN3-213ENST00000541953 C16orf71Q8IYS4 520 aaPredicted RBP20.84■□□□□ 0.93
CLSTN3-213ENST00000541953 CAMTA2O94983 1202 aa20.83■□□□□ 0.93
CLSTN3-213ENST00000541953 LMNB1P20700 586 aa20.83■□□□□ 0.93
CLSTN3-213ENST00000541953 ZNF219Q9P2Y4 722 aaPredicted RBP20.83■□□□□ 0.93
CLSTN3-213ENST00000541953 SLX4Q8IY92 1834 aa20.83■□□□□ 0.92
CLSTN3-213ENST00000541953 H0YIN7 160 aa20.82■□□□□ 0.92
CLSTN3-213ENST00000541953 FSTL1Q12841 308 aa20.82■□□□□ 0.92
CLSTN3-213ENST00000541953 DICER1Q9UPY3 1922 aaKnown RBP20.82■□□□□ 0.92
CLSTN3-213ENST00000541953 IL6STP40189 918 aaPredicted RBP20.81■□□□□ 0.92
CLSTN3-213ENST00000541953 ARFGEF2Q9Y6D5 1785 aa20.8■□□□□ 0.92
CLSTN3-213ENST00000541953 A0A087WZG4 1122 aa20.8■□□□□ 0.92
CLSTN3-213ENST00000541953 GLTPD2A6NH11 291 aa20.8■□□□□ 0.92
CLSTN3-213ENST00000541953 POTECB2RU33 542 aa20.8■□□□□ 0.92
CLSTN3-213ENST00000541953 KLRG1Q96E93 195 aa20.8■□□□□ 0.92
CLSTN3-213ENST00000541953 FMNL2Q96PY5 1086 aa20.8■□□□□ 0.92
CLSTN3-213ENST00000541953 USP16Q9Y5T5 823 aa20.8■□□□□ 0.92
CLSTN3-213ENST00000541953 ZC3H4Q9UPT8 1303 aaKnown RBP20.79■□□□□ 0.92
CLSTN3-213ENST00000541953 C21orf2O43822 256 aa20.79■□□□□ 0.92
CLSTN3-213ENST00000541953 ZNF622Q969S3 477 aaKnown RBP eCLIP20.79■□□□□ 0.92
CLSTN3-213ENST00000541953 BTBD11A6QL63 1104 aa20.78■□□□□ 0.92
CLSTN3-213ENST00000541953 DCTN1Q14203 1278 aa20.78■□□□□ 0.92
CLSTN3-213ENST00000541953 MCM10Q7L590 875 aa20.78■□□□□ 0.92
CLSTN3-213ENST00000541953 BRIP1Q9BX63 1249 aa20.78■□□□□ 0.92
CLSTN3-213ENST00000541953 TEX13AQ9BXU3 409 aaPredicted RBP20.77■□□□□ 0.92
CLSTN3-213ENST00000541953 PPP2R1AP30153 589 aa20.76■□□□□ 0.91
CLSTN3-213ENST00000541953 JMYQ8N9B5 988 aa20.76■□□□□ 0.91
CLSTN3-213ENST00000541953 SMC1BQ8NDV3 1235 aa20.76■□□□□ 0.91
CLSTN3-213ENST00000541953 DZIP3Q86Y13 1208 aaKnown RBP20.75■□□□□ 0.91
CLSTN3-213ENST00000541953 CNBD1Q8NA66 436 aa20.75■□□□□ 0.91
CLSTN3-213ENST00000541953 NBPF26B4DH59 902 aa20.74■□□□□ 0.91
CLSTN3-213ENST00000541953 PDE6BP35913 854 aa20.74■□□□□ 0.91
CLSTN3-213ENST00000541953 NBPF10Q6P3W6 841 aaKnown RBP20.74■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms