RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, human

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
YBX3-208	ENST00000540447	ZNF500	O60304	480 aa	Predicted RBP	10.11	□□□□□ -0.79
YBX3-208	ENST00000540447	ZBTB17	Q13105	803 aa		10.11	□□□□□ -0.79
YBX3-208	ENST00000540447	CACNA2D3	Q8IZS8	1091 aa		10.11	□□□□□ -0.79
YBX3-208	ENST00000540447	TERF2IP	Q9NYB0	399 aa		10.11	□□□□□ -0.79
YBX3-208	ENST00000540447	SERPINA10	Q9UK55	444 aa		10.11	□□□□□ -0.79
YBX3-208	ENST00000540447	CAPN7	Q9Y6W3	813 aa		10.11	□□□□□ -0.79
YBX3-208	ENST00000540447	GBP1	P32455	592 aa		10.11	□□□□□ -0.79
YBX3-208	ENST00000540447	CCDC97	Q96F63	343 aa	Predicted RBP	10.11	□□□□□ -0.79
YBX3-208	ENST00000540447	FSD1	Q9BTV5	496 aa		10.11	□□□□□ -0.79
YBX3-208	ENST00000540447	JADE2	Q9NQC1	790 aa		10.11	□□□□□ -0.79
YBX3-208	ENST00000540447	YEATS4	O95619	227 aa		10.11	□□□□□ -0.79
YBX3-208	ENST00000540447	MX1	P20591	662 aa		10.11	□□□□□ -0.79
YBX3-208	ENST00000540447	SH3BGR	P55822	239 aa	Predicted RBP	10.11	□□□□□ -0.79
YBX3-208	ENST00000540447	CCDC38	Q502W7	563 aa		10.11	□□□□□ -0.79
YBX3-208	ENST00000540447	CCDC129	Q6ZRS4	1044 aa		10.11	□□□□□ -0.79
YBX3-208	ENST00000540447	ALS2CR12	Q96Q35	445 aa		10.1	□□□□□ -0.79
YBX3-208	ENST00000540447	NUP88	Q99567	741 aa	Predicted RBP	10.1	□□□□□ -0.79
YBX3-208	ENST00000540447	MRFAP1	Q9Y605	127 aa		10.1	□□□□□ -0.79
YBX3-208	ENST00000540447	DNA2	P51530	1060 aa		10.1	□□□□□ -0.79
YBX3-208	ENST00000540447	ZKSCAN8	Q15776	578 aa	Predicted RBP	10.1	□□□□□ -0.79
YBX3-208	ENST00000540447	LMOD2	Q6P5Q4	547 aa		10.1	□□□□□ -0.79
YBX3-208	ENST00000540447	TPX2	Q9ULW0	747 aa	Known RBP	10.1	□□□□□ -0.79
YBX3-208	ENST00000540447		A6NNZ2	444 aa		10.1	□□□□□ -0.79
YBX3-208	ENST00000540447	PPP2R3A	Q06190	1150 aa		10.1	□□□□□ -0.79
YBX3-208	ENST00000540447	DIXDC1	Q155Q3	683 aa		10.1	□□□□□ -0.79
YBX3-208	ENST00000540447	TUBB8	Q3ZCM7	444 aa		10.1	□□□□□ -0.79
YBX3-208	ENST00000540447	IFT74	Q96LB3	600 aa		10.1	□□□□□ -0.79
YBX3-208	ENST00000540447	NUP155	O75694	1391 aa		10.1	□□□□□ -0.79
YBX3-208	ENST00000540447	CCDC158	Q5M9N0	1113 aa		10.1	□□□□□ -0.79
YBX3-208	ENST00000540447	RBSN	Q9H1K0	784 aa		10.1	□□□□□ -0.79
YBX3-208	ENST00000540447	SAMD15	Q9P1V8	674 aa		10.1	□□□□□ -0.79
YBX3-208	ENST00000540447	EPB41L3	Q9Y2J2	1087 aa	Predicted RBP	10.1	□□□□□ -0.79
YBX3-208	ENST00000540447	TACC1	O75410	805 aa		10.09	□□□□□ -0.79
YBX3-208	ENST00000540447	RHOXF2B	P0C7M4	288 aa		10.09	□□□□□ -0.79
YBX3-208	ENST00000540447	FAM160A1	Q05DH4	1040 aa		10.09	□□□□□ -0.79
YBX3-208	ENST00000540447	NEDD9	Q14511	834 aa		10.09	□□□□□ -0.79
YBX3-208	ENST00000540447	ANO6	Q4KMQ2	910 aa		10.09	□□□□□ -0.79
YBX3-208	ENST00000540447	RHOXF2	Q9BQY4	288 aa		10.09	□□□□□ -0.79
YBX3-208	ENST00000540447	IRAK4	Q9NWZ3	460 aa		10.09	□□□□□ -0.79
YBX3-208	ENST00000540447	EHBP1	Q8NDI1	1231 aa		10.09	□□□□□ -0.79
YBX3-208	ENST00000540447	WHAMM	Q8TF30	809 aa		10.09	□□□□□ -0.79
YBX3-208	ENST00000540447	GSTTP1	A0A1W2PQM5	241 aa		10.09	□□□□□ -0.79
YBX3-208	ENST00000540447	JAKMIP1	Q96N16	626 aa	Known RBP	10.09	□□□□□ -0.79
YBX3-208	ENST00000540447	GBP5	Q96PP8	586 aa		10.09	□□□□□ -0.79
YBX3-208	ENST00000540447	SLC8A1	P32418	973 aa		10.09	□□□□□ -0.79
YBX3-208	ENST00000540447	LIG3	P49916	1009 aa		10.09	□□□□□ -0.79
YBX3-208	ENST00000540447	ZNF330	Q9Y3S2	320 aa	Predicted RBP	10.09	□□□□□ -0.79
YBX3-208	ENST00000540447	CTAGE9	A4FU28	777 aa		10.09	□□□□□ -0.79
YBX3-208	ENST00000540447	RAB3GAP1	Q15042	981 aa		10.09	□□□□□ -0.79
YBX3-208	ENST00000540447	MCTP2	Q6DN12	878 aa		10.09	□□□□□ -0.79
YBX3-208	ENST00000540447	CCDC155	Q8N6L0	562 aa		10.09	□□□□□ -0.79
YBX3-208	ENST00000540447	NOB1	Q9ULX3	412 aa	Known RBP	10.09	□□□□□ -0.79
YBX3-208	ENST00000540447	CCDC69	A6NI79	296 aa		10.08	□□□□□ -0.8
YBX3-208	ENST00000540447	SMIM24	O75264	130 aa		10.08	□□□□□ -0.8
YBX3-208	ENST00000540447	FKBP5	Q13451	457 aa	Predicted RBP	10.08	□□□□□ -0.8
YBX3-208	ENST00000540447	MAP7	Q14244	749 aa		10.08	□□□□□ -0.8
YBX3-208	ENST00000540447	PUF60	Q9UHX1	559 aa	Known RBP	10.08	□□□□□ -0.8
YBX3-208	ENST00000540447	BLOC1S2	Q6QNY1	142 aa		10.08	□□□□□ -0.8
YBX3-208	ENST00000540447	TAOK3	Q9H2K8	898 aa		10.08	□□□□□ -0.8
YBX3-208	ENST00000540447	BAIAP2L1	Q9UHR4	511 aa		10.08	□□□□□ -0.8
YBX3-208	ENST00000540447	RABGAP1	Q9Y3P9	1069 aa		10.08	□□□□□ -0.8
YBX3-208	ENST00000540447	GNAI1	P63096	354 aa		10.08	□□□□□ -0.8
YBX3-208	ENST00000540447	C17orf53	Q8N3J3	647 aa	Predicted RBP	10.08	□□□□□ -0.8
YBX3-208	ENST00000540447	PPP1R12B	O60237	982 aa	Predicted RBP	10.07	□□□□□ -0.8
YBX3-208	ENST00000540447	C20orf194	Q5TEA3	1177 aa		10.07	□□□□□ -0.8
YBX3-208	ENST00000540447	PNMA8A	Q86V59	439 aa	Predicted RBP	10.07	□□□□□ -0.8
YBX3-208	ENST00000540447	STK26	Q9P289	416 aa		10.07	□□□□□ -0.8
YBX3-208	ENST00000540447	ODF2L	Q9ULJ1	636 aa		10.07	□□□□□ -0.8
YBX3-208	ENST00000540447	ISM2	Q6H9L7	571 aa		10.07	□□□□□ -0.8
YBX3-208	ENST00000540447	KLHL10	Q6JEL2	608 aa		10.07	□□□□□ -0.8
YBX3-208	ENST00000540447	GBP7	Q8N8V2	638 aa	Predicted RBP	10.07	□□□□□ -0.8
YBX3-208	ENST00000540447	SLC24A3	Q9HC58	644 aa		10.07	□□□□□ -0.8
YBX3-208	ENST00000540447	GOLGA6C	A6NDK9	693 aa		10.07	□□□□□ -0.8
YBX3-208	ENST00000540447	GOLGA6D	P0CG33	693 aa		10.07	□□□□□ -0.8
YBX3-208	ENST00000540447	GOLGA6A	Q9NYA3	693 aa		10.07	□□□□□ -0.8
YBX3-208	ENST00000540447	SCRIB	Q14160	1630 aa		10.07	□□□□□ -0.8
YBX3-208	ENST00000540447	MAP3K9	P80192	1104 aa		10.07	□□□□□ -0.8
YBX3-208	ENST00000540447	N4BP2L2	Q92802	583 aa	Predicted RBP	10.07	□□□□□ -0.8
YBX3-208	ENST00000540447	STMN2	Q93045	179 aa		10.07	□□□□□ -0.8
YBX3-208	ENST00000540447	ANKRD18B	A2A2Z9	1011 aa		10.07	□□□□□ -0.8
YBX3-208	ENST00000540447	CETN3	O15182	167 aa		10.07	□□□□□ -0.8
YBX3-208	ENST00000540447	EFCAB13	Q8IY85	973 aa		10.07	□□□□□ -0.8
YBX3-208	ENST00000540447	CDK5RAP3	Q96JB5	506 aa		10.07	□□□□□ -0.8
YBX3-208	ENST00000540447	TRIM7	Q9C029	511 aa		10.07	□□□□□ -0.8
YBX3-208	ENST00000540447	RABEP2	Q9H5N1	569 aa		10.07	□□□□□ -0.8
YBX3-208	ENST00000540447	RIPOR2	Q9Y4F9	1068 aa		10.07	□□□□□ -0.8
YBX3-208	ENST00000540447	ZC3H6	P61129	1189 aa	Known RBP	10.06	□□□□□ -0.8
YBX3-208	ENST00000540447	TBC1D31	Q96DN5	1066 aa		10.06	□□□□□ -0.8
YBX3-208	ENST00000540447	TTC14	Q96N46	770 aa		10.06	□□□□□ -0.8
YBX3-208	ENST00000540447	SELENOS	Q9BQE4	189 aa		10.06	□□□□□ -0.8
YBX3-208	ENST00000540447	LUC7L3	O95232	432 aa	Known RBP	10.06	□□□□□ -0.8
YBX3-208	ENST00000540447	C8orf34	Q49A92	452 aa		10.06	□□□□□ -0.8
YBX3-208	ENST00000540447	LRRD1	A4D1F6	860 aa		10.06	□□□□□ -0.8
YBX3-208	ENST00000540447	SRGAP3	O43295	1099 aa		10.06	□□□□□ -0.8
YBX3-208	ENST00000540447	IRX5	P78411	483 aa	Predicted RBP	10.06	□□□□□ -0.8
YBX3-208	ENST00000540447	DDX55	Q8NHQ9	600 aa	Known RBP eCLIP	10.06	□□□□□ -0.8
YBX3-208	ENST00000540447	SEPT11	Q9NVA2	429 aa	Known RBP	10.06	□□□□□ -0.8
YBX3-208	ENST00000540447	SYT1	P21579	422 aa		10.06	□□□□□ -0.8
YBX3-208	ENST00000540447	STX6	O43752	255 aa		10.06	□□□□□ -0.8
YBX3-208	ENST00000540447	EXOSC9	Q06265	439 aa	Known RBP	10.06	□□□□□ -0.8

Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms