RNA–Protein interactions for RNA: ENST00000540338.5

CLIP1-213, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 4,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-213ENST00000540338 ANKRD26Q9UPS8 1709 aa13.04□□□□□ -0.32
CLIP1-213ENST00000540338 RNF20Q5VTR2 975 aa13.04□□□□□ -0.32
CLIP1-213ENST00000540338 TNPO1Q92973 898 aaKnown RBP13.04□□□□□ -0.32
CLIP1-213ENST00000540338 FSD1Q9BTV5 496 aa13.04□□□□□ -0.32
CLIP1-213ENST00000540338 SLIT1O75093 1534 aa13.03□□□□□ -0.32
CLIP1-213ENST00000540338 SYAP1Q96A49 352 aaPredicted RBP13.03□□□□□ -0.32
CLIP1-213ENST00000540338 MYD88Q99836 296 aa13.03□□□□□ -0.32
CLIP1-213ENST00000540338 ADGRL3Q9HAR2 1447 aa13.03□□□□□ -0.32
CLIP1-213ENST00000540338 ARHGAP23Q9P227 1491 aa13.03□□□□□ -0.32
CLIP1-213ENST00000540338 KCNQ3O43525 872 aa13.03□□□□□ -0.32
CLIP1-213ENST00000540338 SNRPA1P09661 255 aaKnown RBP13.03□□□□□ -0.32
CLIP1-213ENST00000540338 CWC27Q6UX04 472 aaKnown RBP13.03□□□□□ -0.32
CLIP1-213ENST00000540338 LINS1Q8NG48 757 aa13.03□□□□□ -0.32
CLIP1-213ENST00000540338 NFATC2IPQ8NCF5 419 aa13.02□□□□□ -0.32
CLIP1-213ENST00000540338 ESYT1Q9BSJ8 1104 aa13.02□□□□□ -0.32
CLIP1-213ENST00000540338 NAP1L2Q9ULW6 460 aaPredicted RBP13.02□□□□□ -0.33
CLIP1-213ENST00000540338 UBR1Q8IWV7 1749 aa13.02□□□□□ -0.33
CLIP1-213ENST00000540338 DDX21Q9NR30 783 aaKnown RBP eCLIP13.02□□□□□ -0.33
CLIP1-213ENST00000540338 ECHDC1Q9NTX5 307 aa13.01□□□□□ -0.33
CLIP1-213ENST00000540338 BRPF3Q9ULD4 1205 aa13.01□□□□□ -0.33
CLIP1-213ENST00000540338 GRM8O00222 908 aa13.01□□□□□ -0.33
CLIP1-213ENST00000540338 MRE11P49959 708 aa13.01□□□□□ -0.33
CLIP1-213ENST00000540338 HSPA2P54652 639 aa13.01□□□□□ -0.33
CLIP1-213ENST00000540338 NEUROD6Q96NK8 337 aa13.01□□□□□ -0.33
CLIP1-213ENST00000540338 ATP6V1DQ9Y5K8 247 aa13.01□□□□□ -0.33
CLIP1-213ENST00000540338 FOXD4L6Q3SYB3 417 aaPredicted RBP13□□□□□ -0.33
CLIP1-213ENST00000540338 FOXD4L3Q6VB84 417 aaPredicted RBP13□□□□□ -0.33
CLIP1-213ENST00000540338 XAGE3Q8WTP9 111 aa13□□□□□ -0.33
CLIP1-213ENST00000540338 GOLGA6L4A6NEF3 574 aa13□□□□□ -0.33
CLIP1-213ENST00000540338 NBPF7P0C2Y1 421 aaPredicted RBP13□□□□□ -0.33
CLIP1-213ENST00000540338 ZNF790Q6PG37 636 aa13□□□□□ -0.33
CLIP1-213ENST00000540338 ANKRD13DQ6ZTN6 518 aa13□□□□□ -0.33
CLIP1-213ENST00000540338 COPS6Q7L5N1 327 aa13□□□□□ -0.33
CLIP1-213ENST00000540338 DCAF5Q96JK2 942 aa13□□□□□ -0.33
CLIP1-213ENST00000540338 SMC3Q9UQE7 1217 aa13□□□□□ -0.33
CLIP1-213ENST00000540338 GIGYF1O75420 1035 aaPredicted RBP13□□□□□ -0.33
CLIP1-213ENST00000540338 CWF19L2Q2TBE0 894 aaKnown RBP13□□□□□ -0.33
CLIP1-213ENST00000540338 SSFA2P28290 1259 aa12.99□□□□□ -0.33
CLIP1-213ENST00000540338 DDX17Q92841 729 aaKnown RBP12.99□□□□□ -0.33
CLIP1-213ENST00000540338 UPF3BQ9BZI7 483 aaKnown RBP12.99□□□□□ -0.33
CLIP1-213ENST00000540338 SSH3Q8TE77 659 aa12.99□□□□□ -0.33
CLIP1-213ENST00000540338 PTCD1O75127 700 aaKnown RBP12.99□□□□□ -0.33
CLIP1-213ENST00000540338 CHMLP26374 656 aa12.99□□□□□ -0.33
CLIP1-213ENST00000540338 CSPP1Q1MSJ5 1256 aa12.99□□□□□ -0.33
CLIP1-213ENST00000540338 ZSCAN21Q9Y5A6 473 aaPredicted RBP12.99□□□□□ -0.33
CLIP1-213ENST00000540338 PSMA5P28066 241 aa12.98□□□□□ -0.33
CLIP1-213ENST00000540338 SYTL4Q96C24 671 aaPredicted RBP12.98□□□□□ -0.33
CLIP1-213ENST00000540338 NRXN3Q9Y4C0 1643 aa12.98□□□□□ -0.33
CLIP1-213ENST00000540338 HSP90B1P14625 803 aaKnown RBP12.98□□□□□ -0.33
CLIP1-213ENST00000540338 CCDC8Q9H0W5 538 aaPredicted RBP12.98□□□□□ -0.33
CLIP1-213ENST00000540338 ISY1Q9ULR0 285 aaKnown RBP12.98□□□□□ -0.33
CLIP1-213ENST00000540338 TMEM94Q12767 1356 aa12.98□□□□□ -0.33
CLIP1-213ENST00000540338 CEP170BQ9Y4F5 1589 aaPredicted RBP12.98□□□□□ -0.33
CLIP1-213ENST00000540338 PTMAP06454 111 aaKnown RBP12.98□□□□□ -0.33
CLIP1-213ENST00000540338 ANAPC15P60006 121 aa12.98□□□□□ -0.33
CLIP1-213ENST00000540338 BEND3Q5T5X7 828 aa12.98□□□□□ -0.33
CLIP1-213ENST00000540338 OSBPL3Q9H4L5 887 aa12.98□□□□□ -0.33
CLIP1-213ENST00000540338 SLC52A2Q9HAB3 445 aa12.98□□□□□ -0.33
CLIP1-213ENST00000540338 SSH2Q76I76 1423 aa12.98□□□□□ -0.33
CLIP1-213ENST00000540338 PRPF40AO75400 957 aaKnown RBP12.97□□□□□ -0.33
CLIP1-213ENST00000540338 A0A087WZG4 1122 aa12.97□□□□□ -0.33
CLIP1-213ENST00000540338 LRRFIP1Q32MZ4 808 aaKnown RBP12.97□□□□□ -0.33
CLIP1-213ENST00000540338 ZCRB1Q8TBF4 217 aaKnown RBP12.97□□□□□ -0.33
CLIP1-213ENST00000540338 ANTXR1Q9H6X2 564 aa12.97□□□□□ -0.33
CLIP1-213ENST00000540338 CYP46A1Q9Y6A2 500 aa12.97□□□□□ -0.33
CLIP1-213ENST00000540338 AOX1Q06278 1338 aa12.97□□□□□ -0.33
CLIP1-213ENST00000540338 IBTKQ9P2D0 1353 aaPredicted RBP12.97□□□□□ -0.33
CLIP1-213ENST00000540338 EVI5LQ96CN4 794 aa12.97□□□□□ -0.33
CLIP1-213ENST00000540338 DNAJC2Q99543 621 aaKnown RBP12.97□□□□□ -0.33
CLIP1-213ENST00000540338 KIF13AQ9H1H9 1805 aa12.97□□□□□ -0.33
CLIP1-213ENST00000540338 KNDC1Q76NI1 1749 aa12.96□□□□□ -0.33
CLIP1-213ENST00000540338 RAB3GAP1Q15042 981 aa12.96□□□□□ -0.33
CLIP1-213ENST00000540338 BOLA2Q9H3K6 86 aa12.96□□□□□ -0.33
CLIP1-213ENST00000540338 PA2G4Q9UQ80 394 aaKnown RBP12.96□□□□□ -0.33
CLIP1-213ENST00000540338 TTC41PQ6P2S7 1318 aa12.96□□□□□ -0.33
CLIP1-213ENST00000540338 PHF14O94880 888 aa12.96□□□□□ -0.34
CLIP1-213ENST00000540338 KIF6Q6ZMV9 814 aa12.96□□□□□ -0.34
CLIP1-213ENST00000540338 ATP5J2-PTCD1G3V325 749 aa12.95□□□□□ -0.34
CLIP1-213ENST00000540338 UBE3BQ7Z3V4 1068 aa12.95□□□□□ -0.34
CLIP1-213ENST00000540338 IL27Q8NEV9 243 aa12.95□□□□□ -0.34
CLIP1-213ENST00000540338 FER1L4A9Z1Z3 1794 aa12.95□□□□□ -0.34
CLIP1-213ENST00000540338 ERBB3P21860 1342 aa12.95□□□□□ -0.34
CLIP1-213ENST00000540338 SIPA1L2Q9P2F8 1722 aaPredicted RBP12.95□□□□□ -0.34
CLIP1-213ENST00000540338 CAVIN1Q6NZI2 390 aaKnown RBP12.95□□□□□ -0.34
CLIP1-213ENST00000540338 JAKMIP1Q96N16 626 aaKnown RBP12.95□□□□□ -0.34
CLIP1-213ENST00000540338 BAG4O95429 457 aaKnown RBP12.94□□□□□ -0.34
CLIP1-213ENST00000540338 PHKG2P15735 406 aa12.94□□□□□ -0.34
CLIP1-213ENST00000540338 TMX3Q96JJ7 454 aa12.94□□□□□ -0.34
CLIP1-213ENST00000540338 TMOD3Q9NYL9 352 aa12.94□□□□□ -0.34
CLIP1-213ENST00000540338 MBD3O95983 291 aa12.94□□□□□ -0.34
CLIP1-213ENST00000540338 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.94□□□□□ -0.348e-7■■■■□ 22.7
CLIP1-213ENST00000540338 WDR33Q9C0J8 1336 aaKnown RBP12.94□□□□□ -0.34
CLIP1-213ENST00000540338 ZNF496Q96IT1 587 aaPredicted RBP12.94□□□□□ -0.34
CLIP1-213ENST00000540338 AXIN2Q9Y2T1 843 aa12.94□□□□□ -0.34
CLIP1-213ENST00000540338 PIP4K2AP48426 406 aaPredicted RBP12.93□□□□□ -0.34
CLIP1-213ENST00000540338 PDRG1Q9NUG6 133 aa12.93□□□□□ -0.34
CLIP1-213ENST00000540338 STAP2Q9UGK3 403 aa12.93□□□□□ -0.34
CLIP1-213ENST00000540338 CASTP20810 708 aaKnown RBP12.93□□□□□ -0.34
CLIP1-213ENST00000540338 PRPF40BQ6NWY9 871 aaKnown RBP12.93□□□□□ -0.34
CLIP1-213ENST00000540338 MON2Q7Z3U7 1717 aa12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms