RNA–Protein interactions for RNA: ENST00000540304.5

CLIP1-212, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 5

Gene CLIP1, Length 2,554 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-212ENST00000540304 SLC52A2Q9HAB3 445 aa12.02□□□□□ -0.49
CLIP1-212ENST00000540304 GNAI2P04899 355 aa12.01□□□□□ -0.49
CLIP1-212ENST00000540304 HMMRO75330 724 aa12.01□□□□□ -0.49
CLIP1-212ENST00000540304 HSP90AB1P08238 724 aaKnown RBP12.01□□□□□ -0.49
CLIP1-212ENST00000540304 UPF2Q9HAU5 1272 aaKnown RBP12.01□□□□□ -0.49
CLIP1-212ENST00000540304 DBF4Q9UBU7 674 aaPredicted RBP12.01□□□□□ -0.49
CLIP1-212ENST00000540304 HSP90AA2PQ14568 343 aaPredicted RBP12□□□□□ -0.49
CLIP1-212ENST00000540304 DCAF5Q96JK2 942 aa12□□□□□ -0.49
CLIP1-212ENST00000540304 CYP27B1O15528 508 aa12□□□□□ -0.49
CLIP1-212ENST00000540304 TOM1L2Q6ZVM7 507 aa12□□□□□ -0.49
CLIP1-212ENST00000540304 C5P01031 1676 aa12□□□□□ -0.49
CLIP1-212ENST00000540304 GTF2E1P29083 439 aaPredicted RBP11.99□□□□□ -0.49
CLIP1-212ENST00000540304 BMP2KLQ5H9B9 411 aa11.99□□□□□ -0.49
CLIP1-212ENST00000540304 ZNF790Q6PG37 636 aa11.99□□□□□ -0.49
CLIP1-212ENST00000540304 NFATC2IPQ8NCF5 419 aa11.98□□□□□ -0.49
CLIP1-212ENST00000540304 SRCIN1Q9C0H9 1055 aa11.98□□□□□ -0.49
CLIP1-212ENST00000540304 ROBO1Q9Y6N7 1651 aa11.98□□□□□ -0.49
CLIP1-212ENST00000540304 DNAAF4Q8WXU2 420 aa11.98□□□□□ -0.49
CLIP1-212ENST00000540304 PCDH11XQ9BZA7 1347 aa11.97□□□□□ -0.49
CLIP1-212ENST00000540304 PCDH11YQ9BZA8 1340 aa11.97□□□□□ -0.49
CLIP1-212ENST00000540304 CARD10Q9BWT7 1032 aa11.97□□□□□ -0.49
CLIP1-212ENST00000540304 USP44Q9H0E7 712 aa11.97□□□□□ -0.49
CLIP1-212ENST00000540304 ADCY9O60503 1353 aa11.97□□□□□ -0.49
CLIP1-212ENST00000540304 PRAMEF22A3QJZ6 481 aa11.97□□□□□ -0.49
CLIP1-212ENST00000540304 PI4KAP2A4QPH2 592 aa11.97□□□□□ -0.49
CLIP1-212ENST00000540304 ANXA1P04083 346 aa11.97□□□□□ -0.49
CLIP1-212ENST00000540304 UBTFL1P0CB47 393 aaPredicted RBP11.97□□□□□ -0.49
CLIP1-212ENST00000540304 SLC39A6Q13433 755 aa11.97□□□□□ -0.49
CLIP1-212ENST00000540304 PI4KAP1Q8N8J0 262 aa11.97□□□□□ -0.49
CLIP1-212ENST00000540304 HYPKQ9NX55 129 aa11.97□□□□□ -0.49
CLIP1-212ENST00000540304 AHDC1Q5TGY3 1603 aaPredicted RBP11.97□□□□□ -0.49
CLIP1-212ENST00000540304 SHANK3Q9BYB0 1731 aa11.96□□□□□ -0.49
CLIP1-212ENST00000540304 TBC1D32Q96NH3 1257 aa11.96□□□□□ -0.49
CLIP1-212ENST00000540304 PRDM4Q9UKN5 801 aa11.96□□□□□ -0.49
CLIP1-212ENST00000540304 BEND3Q5T5X7 828 aa11.96□□□□□ -0.5
CLIP1-212ENST00000540304 ZCRB1Q8TBF4 217 aaKnown RBP11.96□□□□□ -0.5
CLIP1-212ENST00000540304 DDX21Q9NR30 783 aaKnown RBP eCLIP11.96□□□□□ -0.5
CLIP1-212ENST00000540304 APBB1O00213 710 aa11.95□□□□□ -0.5
CLIP1-212ENST00000540304 IL2RBP14784 551 aa11.95□□□□□ -0.5
CLIP1-212ENST00000540304 CABP4P57796 275 aa11.95□□□□□ -0.5
CLIP1-212ENST00000540304 EVA1CP58658 441 aa11.95□□□□□ -0.5
CLIP1-212ENST00000540304 ATP8B2P98198 1209 aa11.95□□□□□ -0.5
CLIP1-212ENST00000540304 PROSER3Q2NL68 480 aa11.95□□□□□ -0.5
CLIP1-212ENST00000540304 PLEKHM2Q8IWE5 1019 aa11.95□□□□□ -0.5
CLIP1-212ENST00000540304 TTC5Q8N0Z6 440 aa11.95□□□□□ -0.5
CLIP1-212ENST00000540304 LRRFIP2Q9Y608 721 aaKnown RBP11.95□□□□□ -0.5
CLIP1-212ENST00000540304 COL22A1Q8NFW1 1626 aaPredicted RBP11.95□□□□□ -0.5
CLIP1-212ENST00000540304 STRN4Q9NRL3 753 aa11.95□□□□□ -0.5
CLIP1-212ENST00000540304 LAMB4A4D0S4 1761 aa11.95□□□□□ -0.5
CLIP1-212ENST00000540304 COL14A1Q05707 1796 aaKnown RBP11.94□□□□□ -0.5
CLIP1-212ENST00000540304 RRP9O43818 475 aaKnown RBP11.94□□□□□ -0.5
CLIP1-212ENST00000540304 LARP1Q6PKG0 1096 aaKnown RBP11.94□□□□□ -0.5
CLIP1-212ENST00000540304 KSR2Q6VAB6 950 aa11.94□□□□□ -0.5
CLIP1-212ENST00000540304 ZNF496Q96IT1 587 aaPredicted RBP11.94□□□□□ -0.5
CLIP1-212ENST00000540304 ZFP91Q96JP5 570 aaPredicted RBP11.94□□□□□ -0.5
CLIP1-212ENST00000540304 LTBP4Q8N2S1 1624 aa11.94□□□□□ -0.5
CLIP1-212ENST00000540304 MAP3K2Q9Y2U5 619 aa11.94□□□□□ -0.5
CLIP1-212ENST00000540304 PNMA6EA0A0J9YXQ4 647 aa11.93□□□□□ -0.5
CLIP1-212ENST00000540304 DDX58O95786 925 aaKnown RBP11.93□□□□□ -0.5
CLIP1-212ENST00000540304 SNRPA1P09661 255 aaKnown RBP11.93□□□□□ -0.5
CLIP1-212ENST00000540304 MFAP1P55081 439 aaKnown RBP11.93□□□□□ -0.5
CLIP1-212ENST00000540304 IPO4Q8TEX9 1081 aaKnown RBP11.93□□□□□ -0.5
CLIP1-212ENST00000540304 FMNL2Q96PY5 1086 aa11.93□□□□□ -0.5
CLIP1-212ENST00000540304 GLI3P10071 1580 aa11.93□□□□□ -0.5
CLIP1-212ENST00000540304 UBR2Q8IWV8 1755 aa11.93□□□□□ -0.5
CLIP1-212ENST00000540304 SMARCA5O60264 1052 aaPredicted RBP11.93□□□□□ -0.5
CLIP1-212ENST00000540304 ALDH1L1O75891 902 aa11.93□□□□□ -0.5
CLIP1-212ENST00000540304 PDIA6Q15084 440 aa11.93□□□□□ -0.5
CLIP1-212ENST00000540304 NKX1-1Q15270 411 aaPredicted RBP11.93□□□□□ -0.5
CLIP1-212ENST00000540304 C16orf71Q8IYS4 520 aaPredicted RBP11.93□□□□□ -0.5
CLIP1-212ENST00000540304 TPRNQ4KMQ1 711 aa11.92□□□□□ -0.5
CLIP1-212ENST00000540304 TTC22Q5TAA0 569 aa11.92□□□□□ -0.5
CLIP1-212ENST00000540304 PAPPAQ13219 1627 aa11.92□□□□□ -0.5
CLIP1-212ENST00000540304 IBTKQ9P2D0 1353 aaPredicted RBP11.92□□□□□ -0.5
CLIP1-212ENST00000540304 ERVV-2B6SEH9 535 aa11.92□□□□□ -0.5
CLIP1-212ENST00000540304 GSPT1P15170 499 aaKnown RBP11.92□□□□□ -0.5
CLIP1-212ENST00000540304 C22orf23Q9BZE7 217 aa11.92□□□□□ -0.5
CLIP1-212ENST00000540304 EXOC6BQ9Y2D4 811 aa11.92□□□□□ -0.5
CLIP1-212ENST00000540304 NBPF7P0C2Y1 421 aaPredicted RBP11.91□□□□□ -0.5
CLIP1-212ENST00000540304 SSH3Q8TE77 659 aa11.91□□□□□ -0.5
CLIP1-212ENST00000540304 COL16A1Q07092 1604 aaPredicted RBP11.91□□□□□ -0.5
CLIP1-212ENST00000540304 CDC45O75419 566 aa11.91□□□□□ -0.5
CLIP1-212ENST00000540304 OTUD7AQ8TE49 926 aaPredicted RBP11.91□□□□□ -0.5
CLIP1-212ENST00000540304 LRRCC1Q9C099 1032 aa11.91□□□□□ -0.5
CLIP1-212ENST00000540304 BTG4Q9NY30 223 aa11.9□□□□□ -0.5
CLIP1-212ENST00000540304 POLA2Q14181 598 aa11.9□□□□□ -0.5
CLIP1-212ENST00000540304 BECN1Q14457 450 aa11.9□□□□□ -0.5
CLIP1-212ENST00000540304 TBC1D9Q6ZT07 1266 aa11.9□□□□□ -0.5
CLIP1-212ENST00000540304 PPP1R42Q7Z4L9 355 aa11.9□□□□□ -0.5
CLIP1-212ENST00000540304 LINS1Q8NG48 757 aa11.9□□□□□ -0.5
CLIP1-212ENST00000540304 HDAC5Q9UQL6 1122 aa11.9□□□□□ -0.5
CLIP1-212ENST00000540304 TOGARAM1Q9Y4F4 1720 aa11.9□□□□□ -0.5
CLIP1-212ENST00000540304 PLCH1Q4KWH8 1693 aa11.9□□□□□ -0.51
CLIP1-212ENST00000540304 AIMP1Q12904 312 aaKnown RBP11.89□□□□□ -0.51
CLIP1-212ENST00000540304 DDX54Q8TDD1 881 aaKnown RBP11.89□□□□□ -0.51
CLIP1-212ENST00000540304 OSBPL3Q9H4L5 887 aa11.89□□□□□ -0.51
CLIP1-212ENST00000540304 MYL6BP14649 208 aa11.89□□□□□ -0.51
CLIP1-212ENST00000540304 C9orf78Q9NZ63 289 aaPredicted RBP11.89□□□□□ -0.51
CLIP1-212ENST00000540304 USP16Q9Y5T5 823 aa11.89□□□□□ -0.51
CLIP1-212ENST00000540304 PHLPP1O60346 1717 aa11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms