RNA–Protein interactions for RNA: ENST00000539827.5

HOMER3-204, Transcript of homer scaffold protein 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene HOMER3, Length 1,979 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOMER3-204ENST00000539827 USP44Q9H0E7 712 aa28.06■■■□□ 2.08
HOMER3-204ENST00000539827 SNRPA1P09661 255 aaKnown RBP28.06■■■□□ 2.08
HOMER3-204ENST00000539827 USP16Q9Y5T5 823 aa28.06■■■□□ 2.08
HOMER3-204ENST00000539827 BEND3Q5T5X7 828 aa28.05■■■□□ 2.08
HOMER3-204ENST00000539827 NUTM2BA6NNL0 878 aaPredicted RBP28.04■■■□□ 2.08
HOMER3-204ENST00000539827 NUTM2EB1AL46 878 aaPredicted RBP28.04■■■□□ 2.08
HOMER3-204ENST00000539827 NUTM2AQ8IVF1 878 aaPredicted RBP28.04■■■□□ 2.08
HOMER3-204ENST00000539827 AIMP1Q12904 312 aaKnown RBP28.04■■■□□ 2.08
HOMER3-204ENST00000539827 MAP3K2Q9Y2U5 619 aa28.04■■■□□ 2.08
HOMER3-204ENST00000539827 LRRFIP2Q9Y608 721 aaKnown RBP28.03■■■□□ 2.08
HOMER3-204ENST00000539827 UBAP1LF5GYI3 381 aa28.02■■■□□ 2.08
HOMER3-204ENST00000539827 MYL6BP14649 208 aa28.02■■■□□ 2.08
HOMER3-204ENST00000539827 KSR2Q6VAB6 950 aa28.02■■■□□ 2.08
HOMER3-204ENST00000539827 HMMRO75330 724 aa28.02■■■□□ 2.08
HOMER3-204ENST00000539827 UBTFL1P0CB47 393 aaPredicted RBP28.02■■■□□ 2.08
HOMER3-204ENST00000539827 DISP2A7MBM2 1401 aa28■■■□□ 2.07
HOMER3-204ENST00000539827 BCL11AQ9H165 835 aa28■■■□□ 2.07
HOMER3-204ENST00000539827 PLCH1Q4KWH8 1693 aa28■■■□□ 2.07
HOMER3-204ENST00000539827 SEC24BO95487 1268 aa27.99■■■□□ 2.07
HOMER3-204ENST00000539827 PIP4K2AP48426 406 aaPredicted RBP27.99■■■□□ 2.07
HOMER3-204ENST00000539827 APBB1O00213 710 aa27.99■■■□□ 2.07
HOMER3-204ENST00000539827 ATP8B2P98198 1209 aa27.99■■■□□ 2.07
HOMER3-204ENST00000539827 GLI3P10071 1580 aa27.98■■■□□ 2.07
HOMER3-204ENST00000539827 TOGARAM1Q9Y4F4 1720 aa27.98■■■□□ 2.07
HOMER3-204ENST00000539827 DDX58O95786 925 aaKnown RBP27.97■■■□□ 2.07
HOMER3-204ENST00000539827 XAGE3Q8WTP9 111 aa27.97■■■□□ 2.07
HOMER3-204ENST00000539827 PNMA6EA0A0J9YXQ4 647 aa27.97■■■□□ 2.07
HOMER3-204ENST00000539827 IPO9Q96P70 1041 aaKnown RBP27.97■■■□□ 2.07
HOMER3-204ENST00000539827 ZBTB47Q9UFB7 747 aaPredicted RBP27.97■■■□□ 2.07
HOMER3-204ENST00000539827 SMARCA5O60264 1052 aaPredicted RBP27.96■■■□□ 2.07
HOMER3-204ENST00000539827 NBPF7P0C2Y1 421 aaPredicted RBP27.95■■■□□ 2.07
HOMER3-204ENST00000539827 COPS6Q7L5N1 327 aa27.95■■■□□ 2.06
HOMER3-204ENST00000539827 C16orf71Q8IYS4 520 aaPredicted RBP27.95■■■□□ 2.06
HOMER3-204ENST00000539827 CERKQ8TCT0 537 aa27.95■■■□□ 2.06
HOMER3-204ENST00000539827 RIC3Q7Z5B4 369 aa27.94■■■□□ 2.06
HOMER3-204ENST00000539827 TMOD3Q9NYL9 352 aa27.94■■■□□ 2.06
HOMER3-204ENST00000539827 PAPPAQ13219 1627 aa27.93■■■□□ 2.06
HOMER3-204ENST00000539827 PTCD1O75127 700 aaKnown RBP27.93■■■□□ 2.06
HOMER3-204ENST00000539827 ALDH1L1O75891 902 aa27.93■■■□□ 2.06
HOMER3-204ENST00000539827 CWF19L2Q2TBE0 894 aaKnown RBP27.93■■■□□ 2.06
HOMER3-204ENST00000539827 KCPQ6ZWJ8 1503 aa27.93■■■□□ 2.06
HOMER3-204ENST00000539827 UBR2Q8IWV8 1755 aa27.93■■■□□ 2.06
HOMER3-204ENST00000539827 EXOC5O00471 708 aa27.93■■■□□ 2.06
HOMER3-204ENST00000539827 LRP10Q7Z4F1 713 aa27.93■■■□□ 2.06
HOMER3-204ENST00000539827 LAMB4A4D0S4 1761 aa27.93■■■□□ 2.06
HOMER3-204ENST00000539827 NRAPQ86VF7 1730 aa27.92■■■□□ 2.06
HOMER3-204ENST00000539827 EXOC6BQ9Y2D4 811 aa27.92■■■□□ 2.06
HOMER3-204ENST00000539827 PLEKHM2Q8IWE5 1019 aa27.9■■■□□ 2.06
HOMER3-204ENST00000539827 WNK3Q9BYP7 1800 aa27.9■■■□□ 2.06
HOMER3-204ENST00000539827 LINS1Q8NG48 757 aa27.9■■■□□ 2.06
HOMER3-204ENST00000539827 PIGBQ92521 554 aa27.9■■■□□ 2.06
HOMER3-204ENST00000539827 C9orf78Q9NZ63 289 aaPredicted RBP27.9■■■□□ 2.06
HOMER3-204ENST00000539827 SPATA31A1Q5TZJ5 1347 aa27.89■■■□□ 2.06
HOMER3-204ENST00000539827 OTUD7AQ8TE49 926 aaPredicted RBP27.89■■■□□ 2.06
HOMER3-204ENST00000539827 TNS2Q63HR2 1409 aa27.89■■■□□ 2.05
HOMER3-204ENST00000539827 PPP1R42Q7Z4L9 355 aa27.88■■■□□ 2.05
HOMER3-204ENST00000539827 BMP2KLQ5H9B9 411 aa27.88■■■□□ 2.05
HOMER3-204ENST00000539827 ANKRD13DQ6ZTN6 518 aa27.87■■■□□ 2.05
HOMER3-204ENST00000539827 NBPF26B4DH59 902 aa27.86■■■□□ 2.05
HOMER3-204ENST00000539827 IGKV5-2P06315 115 aa27.86■■■□□ 2.05
HOMER3-204ENST00000539827 NBPF14Q5TI25 921 aa27.86■■■□□ 2.05
HOMER3-204ENST00000539827 NBPF10Q6P3W6 841 aaKnown RBP27.86■■■□□ 2.05
HOMER3-204ENST00000539827 NBPF15Q8N660 670 aa27.86■■■□□ 2.05
HOMER3-204ENST00000539827 SSH3Q8TE77 659 aa27.86■■■□□ 2.05
HOMER3-204ENST00000539827 MYD88Q99836 296 aa27.86■■■□□ 2.05
HOMER3-204ENST00000539827 ASAP1Q9ULH1 1129 aa27.86■■■□□ 2.05
HOMER3-204ENST00000539827 A1BGP04217 495 aa27.86■■■□□ 2.05
HOMER3-204ENST00000539827 METTL22Q9BUU2 404 aaPredicted RBP27.86■■■□□ 2.05
HOMER3-204ENST00000539827 ITGB4P16144 1822 aa27.85■■■□□ 2.05
HOMER3-204ENST00000539827 CCDC9Q9Y3X0 531 aaKnown RBP27.85■■■□□ 2.05
HOMER3-204ENST00000539827 NEXNQ0ZGT2 675 aa27.84■■■□□ 2.05
HOMER3-204ENST00000539827 POLA2Q14181 598 aa27.84■■■□□ 2.05
HOMER3-204ENST00000539827 ATG3Q9NT62 314 aa27.84■■■□□ 2.05
HOMER3-204ENST00000539827 THRAP3Q9Y2W1 955 aaKnown RBP27.84■■■□□ 2.05
HOMER3-204ENST00000539827 ERBB4Q15303 1308 aa27.84■■■□□ 2.05
HOMER3-204ENST00000539827 SRGAP3O43295 1099 aa27.83■■■□□ 2.05
HOMER3-204ENST00000539827 ANP32EQ9BTT0 268 aa27.83■■■□□ 2.05
HOMER3-204ENST00000539827 CDCA7Q9BWT1 371 aaPredicted RBP27.83■■■□□ 2.05
HOMER3-204ENST00000539827 SPATA31A5Q5VU36 1347 aa27.82■■■□□ 2.04
HOMER3-204ENST00000539827 SPATA31A7Q8IWB4 1347 aa27.82■■■□□ 2.04
HOMER3-204ENST00000539827 SLIT2O94813 1529 aa27.82■■■□□ 2.04
HOMER3-204ENST00000539827 IBTKQ9P2D0 1353 aaPredicted RBP27.82■■■□□ 2.04
HOMER3-204ENST00000539827 NEURL1BA8MQ27 555 aa27.82■■■□□ 2.04
HOMER3-204ENST00000539827 GRM8O00222 908 aa27.82■■■□□ 2.04
HOMER3-204ENST00000539827 LRRCC1Q9C099 1032 aa27.82■■■□□ 2.04
HOMER3-204ENST00000539827 NOP58Q9Y2X3 529 aaKnown RBP27.82■■■□□ 2.04
HOMER3-204ENST00000539827 GSPT1P15170 499 aaKnown RBP27.81■■■□□ 2.04
HOMER3-204ENST00000539827 DDB1Q16531 1140 aa27.8■■■□□ 2.04
HOMER3-204ENST00000539827 SUCLG2Q96I99 432 aa27.8■■■□□ 2.04
HOMER3-204ENST00000539827 UPF2Q9HAU5 1272 aaKnown RBP27.8■■■□□ 2.04
HOMER3-204ENST00000539827 NWD2Q9ULI1 1742 aa27.8■■■□□ 2.04
HOMER3-204ENST00000539827 TTC22Q5TAA0 569 aa27.8■■■□□ 2.04
HOMER3-204ENST00000539827 SYTL4Q96C24 671 aaPredicted RBP27.8■■■□□ 2.04
HOMER3-204ENST00000539827 DDRGK1Q96HY6 314 aa27.8■■■□□ 2.04
HOMER3-204ENST00000539827 RBM42Q9BTD8 480 aaKnown RBP27.8■■■□□ 2.04
HOMER3-204ENST00000539827 KAT6BQ8WYB5 2073 aa27.8■■■□□ 2.04
HOMER3-204ENST00000539827 UTYO14607 1347 aa27.79■■■□□ 2.04
HOMER3-204ENST00000539827 SURF6O75683 361 aaKnown RBP27.79■■■□□ 2.04
HOMER3-204ENST00000539827 MFAP1P55081 439 aaKnown RBP27.79■■■□□ 2.04
HOMER3-204ENST00000539827 JCADQ9P266 1359 aa27.79■■■□□ 2.04
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms