RNA–Protein interactions for RNA: ENST00000539559.6

TMEM260-203, Transcript of transmembrane protein 260, humanhuman

TSL 1 (best)

Gene TMEM260, Length 2,680 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-203ENST00000539559 NPHP4O75161 1426 aaPredicted RBP24.59■■□□□ 1.53
TMEM260-203ENST00000539559 STK31Q9BXU1 1019 aa24.59■■□□□ 1.53
TMEM260-203ENST00000539559 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP24.58■■□□□ 1.53
TMEM260-203ENST00000539559 FMN2Q9NZ56 1722 aa24.58■■□□□ 1.53
TMEM260-203ENST00000539559 PEAK1Q9H792 1746 aa24.58■■□□□ 1.52
TMEM260-203ENST00000539559 MCM2P49736 904 aa24.58■■□□□ 1.52
TMEM260-203ENST00000539559 TCHHQ07283 1943 aa24.57■■□□□ 1.52
TMEM260-203ENST00000539559 NALCNQ8IZF0 1738 aa24.57■■□□□ 1.52
TMEM260-203ENST00000539559 ATP8B2P98198 1209 aa24.56■■□□□ 1.52
TMEM260-203ENST00000539559 C17orf53Q8N3J3 647 aaPredicted RBP24.56■■□□□ 1.52
TMEM260-203ENST00000539559 TERF1P54274 439 aa24.55■■□□□ 1.52
TMEM260-203ENST00000539559 CNPY2Q9Y2B0 182 aa24.55■■□□□ 1.52
TMEM260-203ENST00000539559 SRCIN1Q9C0H9 1055 aa24.55■■□□□ 1.52
TMEM260-203ENST00000539559 USP25Q9UHP3 1055 aa24.55■■□□□ 1.52
TMEM260-203ENST00000539559 INTS4Q96HW7 963 aaKnown RBP24.54■■□□□ 1.52
TMEM260-203ENST00000539559 CPA1P15085 419 aa24.54■■□□□ 1.52
TMEM260-203ENST00000539559 TSC1Q92574 1164 aa24.53■■□□□ 1.52
TMEM260-203ENST00000539559 RBM33Q96EV2 1170 aaKnown RBP24.53■■□□□ 1.52
TMEM260-203ENST00000539559 GNAI3P08754 354 aa24.52■■□□□ 1.52
TMEM260-203ENST00000539559 ANAPC15P60006 121 aa24.52■■□□□ 1.52
TMEM260-203ENST00000539559 EYA1Q99502 592 aa24.52■■□□□ 1.52
TMEM260-203ENST00000539559 CSPP1Q1MSJ5 1256 aa24.51■■□□□ 1.51
TMEM260-203ENST00000539559 DNTTIP2Q5QJE6 756 aaKnown RBP24.51■■□□□ 1.51
TMEM260-203ENST00000539559 SYAP1Q96A49 352 aaPredicted RBP24.51■■□□□ 1.51
TMEM260-203ENST00000539559 USP44Q9H0E7 712 aa24.51■■□□□ 1.51
TMEM260-203ENST00000539559 ADGRL3Q9HAR2 1447 aa24.5■■□□□ 1.51
TMEM260-203ENST00000539559 NLRP6P59044 892 aa24.5■■□□□ 1.51
TMEM260-203ENST00000539559 TTC12Q9H892 705 aaPredicted RBP24.5■■□□□ 1.51
TMEM260-203ENST00000539559 PHF8Q9UPP1 1060 aa24.5■■□□□ 1.51
TMEM260-203ENST00000539559 RPAP1Q9BWH6 1393 aaPredicted RBP24.5■■□□□ 1.51
TMEM260-203ENST00000539559 HCLS1P14317 486 aaPredicted RBP24.5■■□□□ 1.51
TMEM260-203ENST00000539559 MCM5P33992 734 aa24.5■■□□□ 1.51
TMEM260-203ENST00000539559 TUBGCP6Q96RT7 1819 aa24.49■■□□□ 1.51
TMEM260-203ENST00000539559 RASEFQ8IZ41 740 aa24.49■■□□□ 1.51
TMEM260-203ENST00000539559 PHAXQ9H814 394 aaKnown RBP24.49■■□□□ 1.51
TMEM260-203ENST00000539559 STAP2Q9UGK3 403 aa24.49■■□□□ 1.51
TMEM260-203ENST00000539559 WDR33Q9C0J8 1336 aaKnown RBP24.49■■□□□ 1.51
TMEM260-203ENST00000539559 SURF6O75683 361 aaKnown RBP24.49■■□□□ 1.51
TMEM260-203ENST00000539559 PLCB2Q00722 1185 aa24.49■■□□□ 1.51
TMEM260-203ENST00000539559 SASS6Q6UVJ0 657 aa24.49■■□□□ 1.51
TMEM260-203ENST00000539559 HSPA4P34932 840 aa24.48■■□□□ 1.51
TMEM260-203ENST00000539559 KIAA2012Q0VF49 1180 aa24.48■■□□□ 1.51
TMEM260-203ENST00000539559 CCDC30Q5VVM6 783 aa24.48■■□□□ 1.51
TMEM260-203ENST00000539559 PIK3C2AO00443 1686 aa24.48■■□□□ 1.51
TMEM260-203ENST00000539559 AMPHP49418 695 aa24.48■■□□□ 1.51
TMEM260-203ENST00000539559 FIBPO43427 364 aa24.48■■□□□ 1.51
TMEM260-203ENST00000539559 UBTFL1P0CB47 393 aaPredicted RBP24.48■■□□□ 1.51
TMEM260-203ENST00000539559 NUTM2GQ5VZR2 741 aa24.48■■□□□ 1.51
TMEM260-203ENST00000539559 C14orf37Q86TY3 774 aa24.48■■□□□ 1.51
TMEM260-203ENST00000539559 SPG7Q9UQ90 795 aa24.48■■□□□ 1.51
TMEM260-203ENST00000539559 SBNO1A3KN83 1393 aa24.47■■□□□ 1.51
TMEM260-203ENST00000539559 DDX54Q8TDD1 881 aaKnown RBP24.47■■□□□ 1.51
TMEM260-203ENST00000539559 FAM177BA6PVY3 158 aa24.47■■□□□ 1.51
TMEM260-203ENST00000539559 AK2P54819 239 aa24.47■■□□□ 1.51
TMEM260-203ENST00000539559 PPP1R42Q7Z4L9 355 aa24.47■■□□□ 1.51
TMEM260-203ENST00000539559 ABTB2Q8N961 1025 aa24.47■■□□□ 1.51
TMEM260-203ENST00000539559 LTV1Q96GA3 475 aaPredicted RBP24.47■■□□□ 1.51
TMEM260-203ENST00000539559 SNX14Q9Y5W7 946 aa24.47■■□□□ 1.51
TMEM260-203ENST00000539559 FLT4P35916 1363 aa24.46■■□□□ 1.51
TMEM260-203ENST00000539559 CWC27Q6UX04 472 aaKnown RBP24.46■■□□□ 1.51
TMEM260-203ENST00000539559 RGPD1P0DJD0 1748 aa24.45■■□□□ 1.51
TMEM260-203ENST00000539559 LARGE1O95461 756 aa24.45■■□□□ 1.5
TMEM260-203ENST00000539559 ADCY5O95622 1261 aa24.45■■□□□ 1.5
TMEM260-203ENST00000539559 RUFY3Q7L099 469 aa24.44■■□□□ 1.5
TMEM260-203ENST00000539559 DYNC1I1O14576 645 aa24.44■■□□□ 1.5
TMEM260-203ENST00000539559 SYT1P21579 422 aa24.44■■□□□ 1.5
TMEM260-203ENST00000539559 ARHGEF10O15013 1369 aa24.44■■□□□ 1.5
TMEM260-203ENST00000539559 PHF14O94880 888 aa24.43■■□□□ 1.5
TMEM260-203ENST00000539559 ESCO1Q5FWF5 840 aa24.43■■□□□ 1.5
TMEM260-203ENST00000539559 PI4K2BQ8TCG2 481 aa24.43■■□□□ 1.5
TMEM260-203ENST00000539559 SOS1Q07889 1333 aaPredicted RBP24.43■■□□□ 1.5
TMEM260-203ENST00000539559 GIMAP6Q6P9H5 292 aa24.43■■□□□ 1.5
TMEM260-203ENST00000539559 IL17REQ8NFR9 667 aa24.43■■□□□ 1.5
TMEM260-203ENST00000539559 ZSCAN22P10073 491 aaPredicted RBP24.42■■□□□ 1.5
TMEM260-203ENST00000539559 EIF2S2P20042 333 aaKnown RBP24.42■■□□□ 1.5
TMEM260-203ENST00000539559 SGSM2O43147 1006 aa24.42■■□□□ 1.5
TMEM260-203ENST00000539559 CCDC183Q5T5S1 534 aa24.42■■□□□ 1.5
TMEM260-203ENST00000539559 RHPN1Q8TCX5 695 aa24.42■■□□□ 1.5
TMEM260-203ENST00000539559 SRGAP3O43295 1099 aa24.41■■□□□ 1.5
TMEM260-203ENST00000539559 RAD50Q92878 1312 aa24.41■■□□□ 1.5
TMEM260-203ENST00000539559 STX6O43752 255 aa24.41■■□□□ 1.5
TMEM260-203ENST00000539559 NBPF7P0C2Y1 421 aaPredicted RBP24.41■■□□□ 1.5
TMEM260-203ENST00000539559 USHBP1Q8N6Y0 703 aa24.41■■□□□ 1.5
TMEM260-203ENST00000539559 TTC14Q96N46 770 aa24.41■■□□□ 1.5
TMEM260-203ENST00000539559 SSH3Q8TE77 659 aa24.4■■□□□ 1.5
TMEM260-203ENST00000539559 LSG1Q9H089 658 aaKnown RBP24.4■■□□□ 1.5
TMEM260-203ENST00000539559 GNAT3A8MTJ3 354 aa24.4■■□□□ 1.5
TMEM260-203ENST00000539559 ANXA1P04083 346 aa24.4■■□□□ 1.5
TMEM260-203ENST00000539559 PSME1Q06323 249 aa24.4■■□□□ 1.5
TMEM260-203ENST00000539559 NWD1Q149M9 1564 aa24.4■■□□□ 1.5
TMEM260-203ENST00000539559 CASTP20810 708 aaKnown RBP24.39■■□□□ 1.5
TMEM260-203ENST00000539559 HDGFL1Q5TGJ6 251 aa24.39■■□□□ 1.5
TMEM260-203ENST00000539559 CCDC83Q8IWF9 413 aa24.39■■□□□ 1.5
TMEM260-203ENST00000539559 PRDM10Q9NQV6 1147 aa24.39■■□□□ 1.5
TMEM260-203ENST00000539559 NOLC1Q14978 699 aaKnown RBP eCLIP24.39■■□□□ 1.49
TMEM260-203ENST00000539559 PROSER2Q86WR7 435 aaPredicted RBP24.39■■□□□ 1.49
TMEM260-203ENST00000539559 SMC3Q9UQE7 1217 aa24.38■■□□□ 1.49
TMEM260-203ENST00000539559 IGSF1Q8N6C5 1336 aa24.38■■□□□ 1.49
TMEM260-203ENST00000539559 AP5Z1O43299 807 aa24.38■■□□□ 1.49
TMEM260-203ENST00000539559 PLEKHG5O94827 1062 aa24.38■■□□□ 1.49
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms