RNA–Protein interactions for RNA: ENST00000538933.1

CLSTN3-208, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-208ENST00000538933 INTS5Q6P9B9 1019 aaKnown RBP17.13■□□□□ 0.33
CLSTN3-208ENST00000538933 MKRN1Q9UHC7 482 aaKnown RBP17.13■□□□□ 0.33
CLSTN3-208ENST00000538933 NFKBIEO00221 500 aa17.12■□□□□ 0.33
CLSTN3-208ENST00000538933 PTCD1O75127 700 aaKnown RBP17.11■□□□□ 0.33
CLSTN3-208ENST00000538933 POLKQ9UBT6 870 aa17.11■□□□□ 0.33
CLSTN3-208ENST00000538933 VIRMAQ69YN4 1812 aaKnown RBP17.11■□□□□ 0.33
CLSTN3-208ENST00000538933 TNRC18O15417 2968 aaPredicted RBP17.11■□□□□ 0.33
CLSTN3-208ENST00000538933 FER1L6Q2WGJ9 1857 aa17.1■□□□□ 0.33
CLSTN3-208ENST00000538933 HSP90AB1P08238 724 aaKnown RBP17.09■□□□□ 0.33
CLSTN3-208ENST00000538933 CABP4P57796 275 aa17.09■□□□□ 0.33
CLSTN3-208ENST00000538933 EIF4A2Q14240 407 aaKnown RBP17.09■□□□□ 0.33
CLSTN3-208ENST00000538933 CHADLQ6NUI6 762 aa17.09■□□□□ 0.33
CLSTN3-208ENST00000538933 TTLL6Q8N841 843 aa17.09■□□□□ 0.33
CLSTN3-208ENST00000538933 CNTNAP1P78357 1384 aa17.09■□□□□ 0.33
CLSTN3-208ENST00000538933 ZNF316A6NFI3 1004 aaPredicted RBP17.08■□□□□ 0.32
CLSTN3-208ENST00000538933 POTEIP0CG38 1075 aa17.08■□□□□ 0.32
CLSTN3-208ENST00000538933 POTEJP0CG39 1038 aa17.08■□□□□ 0.32
CLSTN3-208ENST00000538933 NFIXQ14938 502 aa17.08■□□□□ 0.32
CLSTN3-208ENST00000538933 USPL1Q5W0Q7 1092 aa17.08■□□□□ 0.32
CLSTN3-208ENST00000538933 NFATC2IPQ8NCF5 419 aa17.07■□□□□ 0.32
CLSTN3-208ENST00000538933 PASKQ96RG2 1323 aa17.06■□□□□ 0.32
CLSTN3-208ENST00000538933 CTCFP49711 727 aaPredicted RBP17.06■□□□□ 0.32
CLSTN3-208ENST00000538933 DPY19L2Q6NUT2 758 aa17.06■□□□□ 0.32
CLSTN3-208ENST00000538933 BCL2L12Q9HB09 334 aa17.06■□□□□ 0.32
CLSTN3-208ENST00000538933 ANKRD31Q8N7Z5 1873 aa17.05■□□□□ 0.32
CLSTN3-208ENST00000538933 SOS1Q07889 1333 aaPredicted RBP17.05■□□□□ 0.32
CLSTN3-208ENST00000538933 WBP1LQ9NX94 342 aa17.05■□□□□ 0.32
CLSTN3-208ENST00000538933 SCN11AQ9UI33 1791 aa17.05■□□□□ 0.32
CLSTN3-208ENST00000538933 ZPR1O75312 459 aa17.04■□□□□ 0.32
CLSTN3-208ENST00000538933 VEGFBP49765 207 aa17.04■□□□□ 0.32
CLSTN3-208ENST00000538933 FAM161AQ3B820 660 aa17.04■□□□□ 0.32
CLSTN3-208ENST00000538933 PLEKHO1Q53GL0 409 aaPredicted RBP17.04■□□□□ 0.32
CLSTN3-208ENST00000538933 C2CD5Q86YS7 1000 aa17.04■□□□□ 0.32
CLSTN3-208ENST00000538933 POLR3GLQ9BT43 218 aa17.04■□□□□ 0.32
CLSTN3-208ENST00000538933 PCDH10Q9P2E7 1040 aa17.04■□□□□ 0.32
CLSTN3-208ENST00000538933 NARFQ9UHQ1 456 aa17.04■□□□□ 0.32
CLSTN3-208ENST00000538933 CARMIL3Q8ND23 1372 aa17.03■□□□□ 0.32
CLSTN3-208ENST00000538933 SERPINB2P05120 415 aa17.03■□□□□ 0.32
CLSTN3-208ENST00000538933 MTHFSP49914 203 aa17.03■□□□□ 0.32
CLSTN3-208ENST00000538933 LBX1P52954 281 aa17.03■□□□□ 0.32
CLSTN3-208ENST00000538933 ZNF530Q6P9A1 599 aaPredicted RBP17.03■□□□□ 0.32
CLSTN3-208ENST00000538933 ERFEQ4G0M1 354 aa17.02■□□□□ 0.32
CLSTN3-208ENST00000538933 DNAJC10Q8IXB1 793 aa17.02■□□□□ 0.32
CLSTN3-208ENST00000538933 ABHD8Q96I13 439 aa17.02■□□□□ 0.32
CLSTN3-208ENST00000538933 SCN4AP35499 1836 aa17.01■□□□□ 0.31
CLSTN3-208ENST00000538933 H0YIN7 160 aa17.01■□□□□ 0.31
CLSTN3-208ENST00000538933 DDNO94850 711 aaPredicted RBP17.01■□□□□ 0.31
CLSTN3-208ENST00000538933 ITGBL1O95965 494 aaPredicted RBP17.01■□□□□ 0.31
CLSTN3-208ENST00000538933 CYP19A1P11511 503 aaPredicted RBP17.01■□□□□ 0.31
CLSTN3-208ENST00000538933 AMOTQ4VCS5 1084 aa17.01■□□□□ 0.31
CLSTN3-208ENST00000538933 CDCA8Q53HL2 280 aa17.01■□□□□ 0.31
CLSTN3-208ENST00000538933 COL11A2P13942 1736 aaPredicted RBP17■□□□□ 0.31
CLSTN3-208ENST00000538933 RGS19P49795 217 aa16.99■□□□□ 0.31
CLSTN3-208ENST00000538933 AIDAQ96BJ3 306 aa16.99■□□□□ 0.31
CLSTN3-208ENST00000538933 LTBP3Q9NS15 1303 aa16.98■□□□□ 0.31
CLSTN3-208ENST00000538933 SLX4Q8IY92 1834 aa16.98■□□□□ 0.31
CLSTN3-208ENST00000538933 C21orf2O43822 256 aa16.98■□□□□ 0.31
CLSTN3-208ENST00000538933 HSPA8P11142 646 aaKnown RBP16.98■□□□□ 0.31
CLSTN3-208ENST00000538933 COL15A1P39059 1388 aa16.98■□□□□ 0.31
CLSTN3-208ENST00000538933 ADAMTSL1Q8N6G6 1762 aa16.97■□□□□ 0.31
CLSTN3-208ENST00000538933 TMEM88BA6NKF7 163 aa16.97■□□□□ 0.31
CLSTN3-208ENST00000538933 LDHDQ86WU2 507 aa16.97■□□□□ 0.31
CLSTN3-208ENST00000538933 AEBP1Q8IUX7 1158 aa16.97■□□□□ 0.31
CLSTN3-208ENST00000538933 L3MBTL3Q96JM7 780 aaPredicted RBP16.96■□□□□ 0.31
CLSTN3-208ENST00000538933 TAF1DQ9H5J8 278 aaPredicted RBP16.96■□□□□ 0.31
CLSTN3-208ENST00000538933 ZBTB1Q9Y2K1 713 aa16.96■□□□□ 0.31
CLSTN3-208ENST00000538933 CACNA1SQ13698 1873 aa16.95■□□□□ 0.3
CLSTN3-208ENST00000538933 TNNT2P45379 298 aaPredicted RBP16.95■□□□□ 0.3
CLSTN3-208ENST00000538933 C1orf141Q5JVX7 400 aa16.95■□□□□ 0.3
CLSTN3-208ENST00000538933 ZNF219Q9P2Y4 722 aaPredicted RBP16.95■□□□□ 0.3
CLSTN3-208ENST00000538933 ARFGEF2Q9Y6D5 1785 aa16.94■□□□□ 0.3
CLSTN3-208ENST00000538933 RASSF10A6NK89 507 aa16.94■□□□□ 0.3
CLSTN3-208ENST00000538933 ZNF622Q969S3 477 aaKnown RBP eCLIP16.94■□□□□ 0.3
CLSTN3-208ENST00000538933 BRIP1Q9BX63 1249 aa16.94■□□□□ 0.3
CLSTN3-208ENST00000538933 KIF7Q2M1P5 1343 aa16.94■□□□□ 0.3
CLSTN3-208ENST00000538933 MLLT1Q03111 559 aaPredicted RBP16.93■□□□□ 0.3
CLSTN3-208ENST00000538933 TAOK3Q9H2K8 898 aa16.93■□□□□ 0.3
CLSTN3-208ENST00000538933 LGR6Q9HBX8 967 aa16.93■□□□□ 0.3
CLSTN3-208ENST00000538933 PDZRN3Q9UPQ7 1066 aa16.93■□□□□ 0.3
CLSTN3-208ENST00000538933 IQCA1LA6NCM1 817 aa16.92■□□□□ 0.3
CLSTN3-208ENST00000538933 SLC39A6Q13433 755 aa16.92■□□□□ 0.3
CLSTN3-208ENST00000538933 SLC52A2Q9HAB3 445 aa16.92■□□□□ 0.3
CLSTN3-208ENST00000538933 PDE6BP35913 854 aa16.91■□□□□ 0.3
CLSTN3-208ENST00000538933 EIF5P55010 431 aaKnown RBP16.91■□□□□ 0.3
CLSTN3-208ENST00000538933 DEFB115Q30KQ5 88 aa16.91■□□□□ 0.3
CLSTN3-208ENST00000538933 TBC1D9BQ66K14 1250 aa16.91■□□□□ 0.3
CLSTN3-208ENST00000538933 PRR5LQ6MZQ0 368 aa16.91■□□□□ 0.3
CLSTN3-208ENST00000538933 BICDL1Q6ZP65 573 aa16.91■□□□□ 0.3
CLSTN3-208ENST00000538933 CCDC24Q8N4L8 307 aa16.91■□□□□ 0.3
CLSTN3-208ENST00000538933 UBR2Q8IWV8 1755 aa16.91■□□□□ 0.3
CLSTN3-208ENST00000538933 MRC1P22897 1456 aa16.91■□□□□ 0.3
CLSTN3-208ENST00000538933 C7orf43Q8WVR3 580 aa16.9■□□□□ 0.3
CLSTN3-208ENST00000538933 WDR33Q9C0J8 1336 aaKnown RBP16.9■□□□□ 0.3
CLSTN3-208ENST00000538933 THSD7BQ9C0I4 1608 aa16.89■□□□□ 0.29
CLSTN3-208ENST00000538933 MAP2K1Q02750 393 aaPredicted RBP16.89■□□□□ 0.29
CLSTN3-208ENST00000538933 SULT6B1Q6IMI4 303 aa16.89■□□□□ 0.29
CLSTN3-208ENST00000538933 VSIG10Q8N0Z9 540 aa16.89■□□□□ 0.29
CLSTN3-208ENST00000538933 PDE4DIPQ5VU43 2346 aa16.88■□□□□ 0.29
CLSTN3-208ENST00000538933 SCN7AQ01118 1682 aa16.88■□□□□ 0.29
CLSTN3-208ENST00000538933 CCDC85CA6NKD9 419 aa16.88■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms