RNA–Protein interactions for RNA: ENST00000538120.5

CLIP1-210, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 3

Gene CLIP1, Length 2,472 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-210ENST00000538120 ANKRD44Q8N8A2 993 aa13.42□□□□□ -0.26
CLIP1-210ENST00000538120 CD44P16070 742 aaKnown RBP13.42□□□□□ -0.26
CLIP1-210ENST00000538120 ANKRD45Q5TZF3 282 aa13.42□□□□□ -0.26
CLIP1-210ENST00000538120 CEP85Q6P2H3 762 aa13.42□□□□□ -0.26
CLIP1-210ENST00000538120 CRYBG1Q9Y4K1 1723 aa13.42□□□□□ -0.26
CLIP1-210ENST00000538120 KDM3BQ7LBC6 1761 aa13.42□□□□□ -0.26
CLIP1-210ENST00000538120 C19orf67A6NJJ6 358 aa13.41□□□□□ -0.26
CLIP1-210ENST00000538120 CCT4P50991 539 aaKnown RBP13.41□□□□□ -0.26
CLIP1-210ENST00000538120 C1orf141Q5JVX7 400 aa13.41□□□□□ -0.26
CLIP1-210ENST00000538120 DCTPP1Q9H773 170 aa13.41□□□□□ -0.26
CLIP1-210ENST00000538120 OVOS2A0A0G2JMS6 1433 aa13.41□□□□□ -0.26
CLIP1-210ENST00000538120 CHRNA2Q15822 529 aa13.41□□□□□ -0.26
CLIP1-210ENST00000538120 BTBD11A6QL63 1104 aa13.4□□□□□ -0.26
CLIP1-210ENST00000538120 TEFQ10587 303 aa13.4□□□□□ -0.26
CLIP1-210ENST00000538120 HDGFL1Q5TGJ6 251 aa13.4□□□□□ -0.26
CLIP1-210ENST00000538120 SLC4A10Q6U841 1118 aa13.4□□□□□ -0.26
CLIP1-210ENST00000538120 RPAP2Q8IXW5 612 aaPredicted RBP13.4□□□□□ -0.26
CLIP1-210ENST00000538120 CPDO75976 1380 aa13.4□□□□□ -0.26
CLIP1-210ENST00000538120 NLRP2Q9NX02 1062 aa13.4□□□□□ -0.26
CLIP1-210ENST00000538120 SLAIN2Q9P270 581 aa13.4□□□□□ -0.26
CLIP1-210ENST00000538120 HOXB7P09629 217 aa13.39□□□□□ -0.27
CLIP1-210ENST00000538120 ADAMTS7Q9UKP4 1686 aa13.39□□□□□ -0.27
CLIP1-210ENST00000538120 FKBP5Q13451 457 aaPredicted RBP13.39□□□□□ -0.27
CLIP1-210ENST00000538120 PHAXQ9H814 394 aaKnown RBP13.39□□□□□ -0.27
CLIP1-210ENST00000538120 ABCC6O95255 1503 aa13.39□□□□□ -0.27
CLIP1-210ENST00000538120 SOS2Q07890 1332 aaPredicted RBP13.38□□□□□ -0.27
CLIP1-210ENST00000538120 SLKQ9H2G2 1235 aaPredicted RBP13.38□□□□□ -0.27
CLIP1-210ENST00000538120 MEGF6O75095 1541 aa13.38□□□□□ -0.27
CLIP1-210ENST00000538120 HEG1Q9ULI3 1381 aa13.38□□□□□ -0.27
CLIP1-210ENST00000538120 EIF2S2P20042 333 aaKnown RBP13.37□□□□□ -0.27
CLIP1-210ENST00000538120 BRD2P25440 801 aaKnown RBP13.37□□□□□ -0.27
CLIP1-210ENST00000538120 RAPGEF4Q8WZA2 1011 aa13.37□□□□□ -0.27
CLIP1-210ENST00000538120 ECM2O94769 699 aaPredicted RBP13.37□□□□□ -0.27
CLIP1-210ENST00000538120 TATP17735 454 aaPredicted RBP13.36□□□□□ -0.27
CLIP1-210ENST00000538120 CHPF2Q9P2E5 772 aa13.36□□□□□ -0.27
CLIP1-210ENST00000538120 CSB-PGBD3P0DP91 1061 aa13.36□□□□□ -0.27
CLIP1-210ENST00000538120 PHKG2P15735 406 aa13.36□□□□□ -0.27
CLIP1-210ENST00000538120 TBC1D32Q96NH3 1257 aa13.36□□□□□ -0.27
CLIP1-210ENST00000538120 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.36□□□□□ -0.273e-9■■■■□ 19.5
CLIP1-210ENST00000538120 KDM6AO15550 1401 aaPredicted RBP13.36□□□□□ -0.27
CLIP1-210ENST00000538120 SIPA1L3O60292 1781 aaPredicted RBP13.35□□□□□ -0.27
CLIP1-210ENST00000538120 PXDNLA1KZ92 1463 aa13.35□□□□□ -0.27
CLIP1-210ENST00000538120 BMP2KLQ5H9B9 411 aa13.35□□□□□ -0.27
CLIP1-210ENST00000538120 GIGYF1O75420 1035 aaPredicted RBP13.35□□□□□ -0.27
CLIP1-210ENST00000538120 EVX2Q03828 476 aa13.35□□□□□ -0.27
CLIP1-210ENST00000538120 CACNA1FO60840 1977 aa13.35□□□□□ -0.27
CLIP1-210ENST00000538120 PRAMEF22A3QJZ6 481 aa13.34□□□□□ -0.27
CLIP1-210ENST00000538120 GNAI2P04899 355 aa13.34□□□□□ -0.27
CLIP1-210ENST00000538120 PLEKHM2Q8IWE5 1019 aa13.34□□□□□ -0.27
CLIP1-210ENST00000538120 C16orf71Q8IYS4 520 aaPredicted RBP13.34□□□□□ -0.27
CLIP1-210ENST00000538120 SPG7Q9UQ90 795 aa13.34□□□□□ -0.27
CLIP1-210ENST00000538120 HAX1O00165 279 aa13.34□□□□□ -0.27
CLIP1-210ENST00000538120 PYGBP11216 843 aa13.34□□□□□ -0.27
CLIP1-210ENST00000538120 USP44Q9H0E7 712 aa13.34□□□□□ -0.27
CLIP1-210ENST00000538120 PLEKHG2Q9H7P9 1386 aa13.33□□□□□ -0.28
CLIP1-210ENST00000538120 CYP27B1O15528 508 aa13.33□□□□□ -0.28
CLIP1-210ENST00000538120 ANXA1P04083 346 aa13.33□□□□□ -0.28
CLIP1-210ENST00000538120 GNAI3P08754 354 aa13.33□□□□□ -0.28
CLIP1-210ENST00000538120 SLC52A2Q9HAB3 445 aa13.33□□□□□ -0.28
CLIP1-210ENST00000538120 N4BP2Q86UW6 1770 aaPredicted RBP13.33□□□□□ -0.28
CLIP1-210ENST00000538120 IFNL2Q8IZJ0 200 aa13.32□□□□□ -0.28
CLIP1-210ENST00000538120 SMARCA5O60264 1052 aaPredicted RBP13.32□□□□□ -0.28
CLIP1-210ENST00000538120 PROSER3Q2NL68 480 aa13.32□□□□□ -0.28
CLIP1-210ENST00000538120 OTUD7AQ8TE49 926 aaPredicted RBP13.32□□□□□ -0.28
CLIP1-210ENST00000538120 ADCY9O60503 1353 aa13.31□□□□□ -0.28
CLIP1-210ENST00000538120 RGL2O15211 777 aa13.31□□□□□ -0.28
CLIP1-210ENST00000538120 GSPT1P15170 499 aaKnown RBP13.31□□□□□ -0.28
CLIP1-210ENST00000538120 ATP8B2P98198 1209 aa13.31□□□□□ -0.28
CLIP1-210ENST00000538120 SLC39A6Q13433 755 aa13.31□□□□□ -0.28
CLIP1-210ENST00000538120 BEND3Q5T5X7 828 aa13.31□□□□□ -0.28
CLIP1-210ENST00000538120 RNF25Q96BH1 459 aaPredicted RBP13.31□□□□□ -0.28
CLIP1-210ENST00000538120 UPF2Q9HAU5 1272 aaKnown RBP13.31□□□□□ -0.28
CLIP1-210ENST00000538120 DBF4Q9UBU7 674 aaPredicted RBP13.31□□□□□ -0.28
CLIP1-210ENST00000538120 PNMA6EA0A0J9YXQ4 647 aa13.31□□□□□ -0.28
CLIP1-210ENST00000538120 PI4KAP2A4QPH2 592 aa13.31□□□□□ -0.28
CLIP1-210ENST00000538120 HMMRO75330 724 aa13.31□□□□□ -0.28
CLIP1-210ENST00000538120 MFAP1P55081 439 aaKnown RBP13.31□□□□□ -0.28
CLIP1-210ENST00000538120 PI4KAP1Q8N8J0 262 aa13.31□□□□□ -0.28
CLIP1-210ENST00000538120 NFATC2IPQ8NCF5 419 aa13.31□□□□□ -0.28
CLIP1-210ENST00000538120 ANTXR1Q9H6X2 564 aa13.31□□□□□ -0.28
CLIP1-210ENST00000538120 PRDM11Q9NQV5 511 aa13.31□□□□□ -0.28
CLIP1-210ENST00000538120 SCN11AQ9UI33 1791 aa13.3□□□□□ -0.28
CLIP1-210ENST00000538120 BECN1Q14457 450 aa13.3□□□□□ -0.28
CLIP1-210ENST00000538120 ZNF790Q6PG37 636 aa13.3□□□□□ -0.28
CLIP1-210ENST00000538120 SPRYD3Q8NCJ5 442 aa13.3□□□□□ -0.28
CLIP1-210ENST00000538120 DNAAF4Q8WXU2 420 aa13.3□□□□□ -0.28
CLIP1-210ENST00000538120 SRCIN1Q9C0H9 1055 aa13.3□□□□□ -0.28
CLIP1-210ENST00000538120 LRRFIP2Q9Y608 721 aaKnown RBP13.3□□□□□ -0.28
CLIP1-210ENST00000538120 PKD1L3Q7Z443 1732 aa13.3□□□□□ -0.28
CLIP1-210ENST00000538120 WDR17Q8IZU2 1322 aa13.3□□□□□ -0.28
CLIP1-210ENST00000538120 MRC1P22897 1456 aa13.29□□□□□ -0.28
CLIP1-210ENST00000538120 APBB1O00213 710 aa13.29□□□□□ -0.28
CLIP1-210ENST00000538120 PDIA6Q15084 440 aa13.29□□□□□ -0.28
CLIP1-210ENST00000538120 DCAF5Q96JK2 942 aa13.29□□□□□ -0.28
CLIP1-210ENST00000538120 TBC1D2Q9BYX2 928 aa13.29□□□□□ -0.28
CLIP1-210ENST00000538120 C22orf23Q9BZE7 217 aa13.29□□□□□ -0.28
CLIP1-210ENST00000538120 COL5A2P05997 1499 aaPredicted RBP13.29□□□□□ -0.28
CLIP1-210ENST00000538120 TAF7LQ5H9L4 462 aa13.29□□□□□ -0.28
CLIP1-210ENST00000538120 UBTFL1P0CB47 393 aaPredicted RBP13.28□□□□□ -0.28
CLIP1-210ENST00000538120 TTC22Q5TAA0 569 aa13.28□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms