RNA–Protein interactions for RNA: ENST00000535896.6

SYNE1-233, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5

Gene SYNE1, Length 1,388 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-233ENST00000535896 GNAI1P63096 354 aa7.88□□□□□ -1.15
SYNE1-233ENST00000535896 ESCO1Q5FWF5 840 aa7.88□□□□□ -1.15
SYNE1-233ENST00000535896 CHD1LQ86WJ1 897 aa7.88□□□□□ -1.15
SYNE1-233ENST00000535896 TMEM57Q8N5G2 664 aa7.88□□□□□ -1.15
SYNE1-233ENST00000535896 NOB1Q9ULX3 412 aaKnown RBP7.88□□□□□ -1.15
SYNE1-233ENST00000535896 RGPD8O14715 1765 aaPredicted RBP7.88□□□□□ -1.15
SYNE1-233ENST00000535896 NPHP3Q7Z494 1330 aa7.88□□□□□ -1.15
SYNE1-233ENST00000535896 TUBGCP6Q96RT7 1819 aa7.88□□□□□ -1.15
SYNE1-233ENST00000535896 NUTM2FA1L443 756 aa7.87□□□□□ -1.15
SYNE1-233ENST00000535896 U2SURPO15042 1029 aaKnown RBP7.87□□□□□ -1.15
SYNE1-233ENST00000535896 NFE2L2Q16236 605 aa7.87□□□□□ -1.15
SYNE1-233ENST00000535896 PAXIP1Q6ZW49 1069 aaPredicted RBP7.87□□□□□ -1.15
SYNE1-233ENST00000535896 TSR2Q969E8 191 aaKnown RBP7.87□□□□□ -1.15
SYNE1-233ENST00000535896 ORAI2Q96SN7 254 aa7.87□□□□□ -1.15
SYNE1-233ENST00000535896 API5Q9BZZ5 524 aaKnown RBP7.87□□□□□ -1.15
SYNE1-233ENST00000535896 TNNQ9UQP3 1299 aa7.87□□□□□ -1.15
SYNE1-233ENST00000535896 PLEKHG3A1L390 1219 aa7.86□□□□□ -1.15
SYNE1-233ENST00000535896 HRO43593 1189 aa7.86□□□□□ -1.15
SYNE1-233ENST00000535896 TRAK2O60296 914 aa7.86□□□□□ -1.15
SYNE1-233ENST00000535896 ZNF853P0CG23 659 aa7.86□□□□□ -1.15
SYNE1-233ENST00000535896 CLCN1P35523 988 aa7.86□□□□□ -1.15
SYNE1-233ENST00000535896 MFAP1P55081 439 aaKnown RBP7.86□□□□□ -1.15
SYNE1-233ENST00000535896 RAB3GAP1Q15042 981 aa7.86□□□□□ -1.15
SYNE1-233ENST00000535896 DMRTA1Q5VZB9 504 aa7.86□□□□□ -1.15
SYNE1-233ENST00000535896 USP54Q70EL1 1684 aa7.86□□□□□ -1.15
SYNE1-233ENST00000535896 PHLPP1O60346 1717 aa7.86□□□□□ -1.15
SYNE1-233ENST00000535896 KIAA0232Q92628 1395 aa7.86□□□□□ -1.15
SYNE1-233ENST00000535896 COL16A1Q07092 1604 aaPredicted RBP7.86□□□□□ -1.15
SYNE1-233ENST00000535896 PSEN2P49810 448 aa7.85□□□□□ -1.15
SYNE1-233ENST00000535896 PTCD2Q8WV60 388 aaKnown RBP7.85□□□□□ -1.15
SYNE1-233ENST00000535896 GGNBP2Q9H3C7 697 aa7.85□□□□□ -1.15
SYNE1-233ENST00000535896 SOS2Q07890 1332 aaPredicted RBP7.85□□□□□ -1.15
SYNE1-233ENST00000535896 LRRC37A3O60309 1634 aa7.85□□□□□ -1.15
SYNE1-233ENST00000535896 PXDNQ92626 1479 aa7.85□□□□□ -1.15
SYNE1-233ENST00000535896 GOLGA6L22H0YM25 854 aa7.84□□□□□ -1.15
SYNE1-233ENST00000535896 K7ELQ4 463 aaPredicted RBP7.84□□□□□ -1.15
SYNE1-233ENST00000535896 ZBTB7BO15156 539 aaPredicted RBP7.84□□□□□ -1.15
SYNE1-233ENST00000535896 FOXO3O43524 673 aa7.84□□□□□ -1.15
SYNE1-233ENST00000535896 CDC45O75419 566 aa7.84□□□□□ -1.15
SYNE1-233ENST00000535896 PSME1Q06323 249 aa7.84□□□□□ -1.15
SYNE1-233ENST00000535896 MRPL50Q8N5N7 158 aaKnown RBP7.84□□□□□ -1.15
SYNE1-233ENST00000535896 NGDNQ8NEJ9 315 aaKnown RBP7.84□□□□□ -1.15
SYNE1-233ENST00000535896 SBNO1A3KN83 1393 aa7.84□□□□□ -1.15
SYNE1-233ENST00000535896 VAMP4O75379 141 aa7.84□□□□□ -1.16
SYNE1-233ENST00000535896 PPP1R37O75864 691 aa7.84□□□□□ -1.16
SYNE1-233ENST00000535896 RGS20O76081 388 aa7.84□□□□□ -1.16
SYNE1-233ENST00000535896 HSP90AB1P08238 724 aaKnown RBP7.84□□□□□ -1.16
SYNE1-233ENST00000535896 XRCC6P12956 609 aaKnown RBP eCLIP7.84□□□□□ -1.16
SYNE1-233ENST00000535896 PRKAR2BP31323 418 aa7.84□□□□□ -1.16
SYNE1-233ENST00000535896 HSPA1LP34931 641 aa7.84□□□□□ -1.16
SYNE1-233ENST00000535896 RABEP1Q15276 862 aa7.84□□□□□ -1.16
SYNE1-233ENST00000535896 LRRC59Q96AG4 307 aaKnown RBP7.84□□□□□ -1.16
SYNE1-233ENST00000535896 KCTD12Q96CX2 325 aaKnown RBP7.84□□□□□ -1.16
SYNE1-233ENST00000535896 ANO8Q9HCE9 1232 aaPredicted RBP7.84□□□□□ -1.16
SYNE1-233ENST00000535896 CABP1Q9NZU7 370 aa7.84□□□□□ -1.16
SYNE1-233ENST00000535896 FAM208AQ9UK61 1670 aaKnown RBP7.83□□□□□ -1.16
SYNE1-233ENST00000535896 ACEP12821 1306 aa7.83□□□□□ -1.16
SYNE1-233ENST00000535896 ARHGEF10O15013 1369 aa7.83□□□□□ -1.16
SYNE1-233ENST00000535896 PPP4R3BQ5MIZ7 849 aa7.83□□□□□ -1.16
SYNE1-233ENST00000535896 KRT28Q7Z3Y7 464 aa7.83□□□□□ -1.16
SYNE1-233ENST00000535896 GRPEL1Q9HAV7 217 aa7.83□□□□□ -1.16
SYNE1-233ENST00000535896 POLKQ9UBT6 870 aa7.83□□□□□ -1.16
SYNE1-233ENST00000535896 PTPRCP08575 1304 aa7.83□□□□□ -1.16
SYNE1-233ENST00000535896 JCADQ9P266 1359 aa7.82□□□□□ -1.16
SYNE1-233ENST00000535896 USP6P35125 1406 aa7.82□□□□□ -1.16
SYNE1-233ENST00000535896 TNS3Q68CZ2 1445 aa7.82□□□□□ -1.16
SYNE1-233ENST00000535896 ATP10DQ9P241 1426 aa7.82□□□□□ -1.16
SYNE1-233ENST00000535896 TRPM3Q9HCF6 1732 aaPredicted RBP7.82□□□□□ -1.16
SYNE1-233ENST00000535896 IL13P35225 146 aa7.82□□□□□ -1.16
SYNE1-233ENST00000535896 NUCB2P80303 420 aa7.82□□□□□ -1.16
SYNE1-233ENST00000535896 INTS3Q68E01 1043 aaKnown RBP7.82□□□□□ -1.16
SYNE1-233ENST00000535896 CASC1Q6TDU7 716 aa7.82□□□□□ -1.16
SYNE1-233ENST00000535896 RPAP2Q8IXW5 612 aaPredicted RBP7.82□□□□□ -1.16
SYNE1-233ENST00000535896 RTL1A6NKG5 1358 aa7.82□□□□□ -1.16
SYNE1-233ENST00000535896 OVOS2A0A0J9YW53 1432 aa7.82□□□□□ -1.16
SYNE1-233ENST00000535896 OVOS2Q6IE36 1432 aa7.82□□□□□ -1.16
SYNE1-233ENST00000535896 KLHL40Q2TBA0 621 aa7.81□□□□□ -1.16
SYNE1-233ENST00000535896 TWISTNBQ3B726 338 aaPredicted RBP7.81□□□□□ -1.16
SYNE1-233ENST00000535896 TBC1D9Q6ZT07 1266 aa7.81□□□□□ -1.16
SYNE1-233ENST00000535896 SPRYD3Q8NCJ5 442 aa7.81□□□□□ -1.16
SYNE1-233ENST00000535896 DDX17Q92841 729 aaKnown RBP7.81□□□□□ -1.16
SYNE1-233ENST00000535896 TNPO1Q92973 898 aaKnown RBP7.81□□□□□ -1.16
SYNE1-233ENST00000535896 KIF2CQ99661 725 aa7.81□□□□□ -1.16
SYNE1-233ENST00000535896 LNPKQ9C0E8 428 aa7.81□□□□□ -1.16
SYNE1-233ENST00000535896 DCTPP1Q9H773 170 aa7.81□□□□□ -1.16
SYNE1-233ENST00000535896 CWC22Q9HCG8 908 aaKnown RBP7.81□□□□□ -1.16
SYNE1-233ENST00000535896 SOS1Q07889 1333 aaPredicted RBP7.81□□□□□ -1.16
SYNE1-233ENST00000535896 SPATA31A3Q5VYP0 1347 aa7.81□□□□□ -1.16
SYNE1-233ENST00000535896 TTC21AQ8NDW8 1320 aa7.81□□□□□ -1.16
SYNE1-233ENST00000535896 RGS12O14924 1447 aa7.81□□□□□ -1.16
SYNE1-233ENST00000535896 SSH2Q76I76 1423 aa7.81□□□□□ -1.16
SYNE1-233ENST00000535896 PXDNLA1KZ92 1463 aa7.81□□□□□ -1.16
SYNE1-233ENST00000535896 COL22A1Q8NFW1 1626 aaPredicted RBP7.81□□□□□ -1.16
SYNE1-233ENST00000535896 ALS2Q96Q42 1657 aa7.81□□□□□ -1.16
SYNE1-233ENST00000535896 MED1Q15648 1581 aaPredicted RBP7.8□□□□□ -1.16
SYNE1-233ENST00000535896 SPATA31A6Q5VVP1 1343 aa7.8□□□□□ -1.16
SYNE1-233ENST00000535896 EPB41L2O43491 1005 aaKnown RBP7.8□□□□□ -1.16
SYNE1-233ENST00000535896 TBC1D12O60347 775 aa7.8□□□□□ -1.16
SYNE1-233ENST00000535896 XPCQ01831 940 aaPredicted RBP7.8□□□□□ -1.16
SYNE1-233ENST00000535896 CCDC173Q0VFZ6 552 aa7.8□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 126.9 ms