RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 ARHGAP27Q6ZUM4 889 aa15.31■□□□□ 0.04
VPS28-214ENST00000531032 PIM2Q9P1W9 311 aa15.31■□□□□ 0.04
VPS28-214ENST00000531032 ZBTB1Q9Y2K1 713 aa15.31■□□□□ 0.04
VPS28-214ENST00000531032 U2SURPO15042 1029 aaKnown RBP15.3■□□□□ 0.04
VPS28-214ENST00000531032 AFDNP55196 1824 aaKnown RBP15.3■□□□□ 0.04
VPS28-214ENST00000531032 GAS2L2Q8NHY3 880 aa15.3■□□□□ 0.04
VPS28-214ENST00000531032 NARFQ9UHQ1 456 aa15.3■□□□□ 0.04
VPS28-214ENST00000531032 GNAT3A8MTJ3 354 aa15.28■□□□□ 0.04
VPS28-214ENST00000531032 HSPA6P17066 643 aa15.28■□□□□ 0.04
VPS28-214ENST00000531032 CHRNA5P30532 468 aa15.28■□□□□ 0.04
VPS28-214ENST00000531032 NFIXQ14938 502 aa15.28■□□□□ 0.04
VPS28-214ENST00000531032 DALRD3Q5D0E6 543 aaKnown RBP15.28■□□□□ 0.04
VPS28-214ENST00000531032 TTC5Q8N0Z6 440 aa15.28■□□□□ 0.04
VPS28-214ENST00000531032 IL17REQ8NFR9 667 aa15.28■□□□□ 0.04
VPS28-214ENST00000531032 BCL2L12Q9HB09 334 aa15.28■□□□□ 0.04
VPS28-214ENST00000531032 CEMIPQ8WUJ3 1361 aa15.27■□□□□ 0.04
VPS28-214ENST00000531032 DLEC1Q9Y238 1755 aa15.27■□□□□ 0.04
VPS28-214ENST00000531032 STARD3NLO95772 234 aa15.27■□□□□ 0.04
VPS28-214ENST00000531032 TEFQ10587 303 aa15.27■□□□□ 0.04
VPS28-214ENST00000531032 CNGB1Q14028 1251 aaPredicted RBP15.27■□□□□ 0.04
VPS28-214ENST00000531032 ZNF790Q6PG37 636 aa15.27■□□□□ 0.04
VPS28-214ENST00000531032 HEG1Q9ULI3 1381 aa15.26■□□□□ 0.03
VPS28-214ENST00000531032 SCN7AQ01118 1682 aa15.26■□□□□ 0.03
VPS28-214ENST00000531032 EIF5P55010 431 aaKnown RBP15.26■□□□□ 0.03
VPS28-214ENST00000531032 ZNF496Q96IT1 587 aaPredicted RBP15.26■□□□□ 0.03
VPS28-214ENST00000531032 CANXP27824 592 aaKnown RBP15.25■□□□□ 0.03
VPS28-214ENST00000531032 C9orf131Q5VYM1 1079 aa15.25■□□□□ 0.03
VPS28-214ENST00000531032 RSPH6AQ9H0K4 717 aa15.25■□□□□ 0.03
VPS28-214ENST00000531032 A0A087WZG4 1122 aa15.24■□□□□ 0.03
VPS28-214ENST00000531032 PRKAR2BP31323 418 aa15.24■□□□□ 0.03
VPS28-214ENST00000531032 PHACTR3Q96KR7 559 aa15.24■□□□□ 0.03
VPS28-214ENST00000531032 CFAP53Q96M91 514 aa15.24■□□□□ 0.03
VPS28-214ENST00000531032 TEX13AQ9BXU3 409 aaPredicted RBP15.24■□□□□ 0.03
VPS28-214ENST00000531032 SBF1O95248 1867 aa15.24■□□□□ 0.03
VPS28-214ENST00000531032 TOMM70O94826 608 aa15.23■□□□□ 0.03
VPS28-214ENST00000531032 SERPINB2P05120 415 aa15.23■□□□□ 0.03
VPS28-214ENST00000531032 NMRK2Q9NPI5 230 aa15.23■□□□□ 0.03
VPS28-214ENST00000531032 CARMIL3Q8ND23 1372 aa15.23■□□□□ 0.03
VPS28-214ENST00000531032 FMNL2Q96PY5 1086 aa15.22■□□□□ 0.03
VPS28-214ENST00000531032 RNF181Q9P0P0 153 aa15.22■□□□□ 0.03
VPS28-214ENST00000531032 PPP2R1AP30153 589 aa15.21■□□□□ 0.03
VPS28-214ENST00000531032 IL6STP40189 918 aaPredicted RBP15.21■□□□□ 0.03
VPS28-214ENST00000531032 NUDCQ9Y266 331 aa15.21■□□□□ 0.03
VPS28-214ENST00000531032 ANKRD31Q8N7Z5 1873 aa15.2■□□□□ 0.02
VPS28-214ENST00000531032 TNRC6CQ9HCJ0 1690 aaKnown RBP15.2■□□□□ 0.02
VPS28-214ENST00000531032 TBC1D9BQ66K14 1250 aa15.2■□□□□ 0.02
VPS28-214ENST00000531032 BCORQ6W2J9 1755 aa15.2■□□□□ 0.02
VPS28-214ENST00000531032 BTBD11A6QL63 1104 aa15.19■□□□□ 0.02
VPS28-214ENST00000531032 KCNQ3O43525 872 aa15.19■□□□□ 0.02
VPS28-214ENST00000531032 U2AF1L5P0DN76 240 aaPredicted RBP15.19■□□□□ 0.02
VPS28-214ENST00000531032 U2AF1Q01081 240 aaKnown RBP eCLIP15.19■□□□□ 0.02
VPS28-214ENST00000531032 BICDL1Q6ZP65 573 aa15.19■□□□□ 0.02
VPS28-214ENST00000531032 C2CD5Q86YS7 1000 aa15.19■□□□□ 0.02
VPS28-214ENST00000531032 TTLL6Q8N841 843 aa15.19■□□□□ 0.02
VPS28-214ENST00000531032 KDM2BQ8NHM5 1336 aa15.18■□□□□ 0.02
VPS28-214ENST00000531032 ZC3H4Q9UPT8 1303 aaKnown RBP15.18■□□□□ 0.02
VPS28-214ENST00000531032 A1BGP04217 495 aa15.18■□□□□ 0.02
VPS28-214ENST00000531032 APLP1P51693 650 aa15.18■□□□□ 0.02
VPS28-214ENST00000531032 RBM46Q8TBY0 533 aaKnown RBP15.18■□□□□ 0.02
VPS28-214ENST00000531032 TBC1D2BQ9UPU7 963 aa15.18■□□□□ 0.02
VPS28-214ENST00000531032 COL11A2P13942 1736 aaPredicted RBP15.17■□□□□ 0.02
VPS28-214ENST00000531032 H0YIN7 160 aa15.17■□□□□ 0.02
VPS28-214ENST00000531032 CAMTA2O94983 1202 aa15.17■□□□□ 0.02
VPS28-214ENST00000531032 RASSF7Q02833 373 aa15.17■□□□□ 0.02
VPS28-214ENST00000531032 ZNF330Q9Y3S2 320 aaPredicted RBP15.17■□□□□ 0.02
VPS28-214ENST00000531032 LMNB1P20700 586 aa15.16■□□□□ 0.02
VPS28-214ENST00000531032 PRELPP51888 382 aa15.16■□□□□ 0.02
VPS28-214ENST00000531032 PRR5LQ6MZQ0 368 aa15.16■□□□□ 0.02
VPS28-214ENST00000531032 MCM10Q7L590 875 aa15.16■□□□□ 0.02
VPS28-214ENST00000531032 RTF1Q92541 710 aaKnown RBP15.16■□□□□ 0.02
VPS28-214ENST00000531032 BRIP1Q9BX63 1249 aa15.16■□□□□ 0.02
VPS28-214ENST00000531032 PDZRN3Q9UPQ7 1066 aa15.16■□□□□ 0.02
VPS28-214ENST00000531032 USP16Q9Y5T5 823 aa15.16■□□□□ 0.02
VPS28-214ENST00000531032 TIAM2Q8IVF5 1701 aa15.16■□□□□ 0.02
VPS28-214ENST00000531032 HTATSF1O43719 755 aaKnown RBP15.15■□□□□ 0.02
VPS28-214ENST00000531032 PDE6BP35913 854 aa15.15■□□□□ 0.02
VPS28-214ENST00000531032 NPM2Q86SE8 214 aaKnown RBP15.15■□□□□ 0.02
VPS28-214ENST00000531032 PRAMEF22A3QJZ6 481 aa15.14■□□□□ 0.01
VPS28-214ENST00000531032 NFKBIEO00221 500 aa15.14■□□□□ 0.01
VPS28-214ENST00000531032 SNRPA1P09661 255 aaKnown RBP15.14■□□□□ 0.01
VPS28-214ENST00000531032 DZIP3Q86Y13 1208 aaKnown RBP15.14■□□□□ 0.01
VPS28-214ENST00000531032 C16orf71Q8IYS4 520 aaPredicted RBP15.14■□□□□ 0.01
VPS28-214ENST00000531032 SETDB2Q96T68 719 aa15.14■□□□□ 0.01
VPS28-214ENST00000531032 WDR90Q96KV7 1748 aa15.14■□□□□ 0.01
VPS28-214ENST00000531032 CCDC88AQ3V6T2 1871 aa15.14■□□□□ 0.01
VPS28-214ENST00000531032 FSTL1Q12841 308 aa15.13■□□□□ 0.01
VPS28-214ENST00000531032 CNBD1Q8NA66 436 aa15.13■□□□□ 0.01
VPS28-214ENST00000531032 RRAGCQ9HB90 399 aa15.13■□□□□ 0.01
VPS28-214ENST00000531032 FER1L6Q2WGJ9 1857 aa15.12■□□□□ 0.01
VPS28-214ENST00000531032 LAMB4A4D0S4 1761 aa15.12■□□□□ 0.01
VPS28-214ENST00000531032 ARFGEF2Q9Y6D5 1785 aa15.12■□□□□ 0.01
VPS28-214ENST00000531032 PIP4K2AP48426 406 aaPredicted RBP15.12■□□□□ 0.01
VPS28-214ENST00000531032 DCTN1Q14203 1278 aa15.12■□□□□ 0.01
VPS28-214ENST00000531032 CLEC4GQ6UXB4 293 aa15.12■□□□□ 0.01
VPS28-214ENST00000531032 CCDC24Q8N4L8 307 aa15.12■□□□□ 0.01
VPS28-214ENST00000531032 DNAJC5GQ8N7S2 189 aa15.12■□□□□ 0.01
VPS28-214ENST00000531032 ZNF622Q969S3 477 aaKnown RBP eCLIP15.12■□□□□ 0.012e-11■■■■■ 40.7
VPS28-214ENST00000531032 GLTPD2A6NH11 291 aa15.11■□□□□ 0.01
VPS28-214ENST00000531032 RGL2O15211 777 aa15.11■□□□□ 0.01
VPS28-214ENST00000531032 ST5P78524 1137 aa15.11■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 87.4 ms