RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 PPP1R42Q7Z4L9 355 aa23.42■■□□□ 1.34
VPS28-213ENST00000530983 TMEM63CQ9P1W3 806 aa23.42■■□□□ 1.34
VPS28-213ENST00000530983 NSFL1CQ9UNZ2 370 aaKnown RBP23.42■■□□□ 1.34
VPS28-213ENST00000530983 POLA2Q14181 598 aa23.41■■□□□ 1.34
VPS28-213ENST00000530983 NUTM1Q86Y26 1132 aa23.41■■□□□ 1.34
VPS28-213ENST00000530983 NOL8Q76FK4 1167 aaKnown RBP23.41■■□□□ 1.34
VPS28-213ENST00000530983 UPF3BQ9BZI7 483 aaKnown RBP23.4■■□□□ 1.34
VPS28-213ENST00000530983 KDM3BQ7LBC6 1761 aa23.4■■□□□ 1.34
VPS28-213ENST00000530983 RAB11FIP3O75154 756 aa23.39■■□□□ 1.34
VPS28-213ENST00000530983 SURF6O75683 361 aaKnown RBP23.39■■□□□ 1.33
VPS28-213ENST00000530983 ZSCAN30Q86W11 494 aa23.38■■□□□ 1.33
VPS28-213ENST00000530983 PI4K2BQ8TCG2 481 aa23.38■■□□□ 1.33
VPS28-213ENST00000530983 ZMYND15Q9H091 742 aa23.38■■□□□ 1.33
VPS28-213ENST00000530983 EPB41L2O43491 1005 aaKnown RBP23.38■■□□□ 1.33
VPS28-213ENST00000530983 HSPA4P34932 840 aa23.38■■□□□ 1.33
VPS28-213ENST00000530983 RHPN1Q8TCX5 695 aa23.38■■□□□ 1.33
VPS28-213ENST00000530983 EIF4A1P60842 406 aaKnown RBP23.37■■□□□ 1.33
VPS28-213ENST00000530983 SETD1BQ9UPS6 1966 aaKnown RBP23.37■■□□□ 1.33
VPS28-213ENST00000530983 NBPF7P0C2Y1 421 aaPredicted RBP23.37■■□□□ 1.33
VPS28-213ENST00000530983 EIF2S2P20042 333 aaKnown RBP23.37■■□□□ 1.33
VPS28-213ENST00000530983 SRGAP3O43295 1099 aa23.36■■□□□ 1.33
VPS28-213ENST00000530983 MAP4K4O95819 1239 aaPredicted RBP23.36■■□□□ 1.33
VPS28-213ENST00000530983 LRSAM1Q6UWE0 723 aa23.36■■□□□ 1.33
VPS28-213ENST00000530983 LGR6Q9HBX8 967 aa23.36■■□□□ 1.33
VPS28-213ENST00000530983 C14orf37Q86TY3 774 aa23.36■■□□□ 1.33
VPS28-213ENST00000530983 PDLIM2Q96JY6 352 aa23.36■■□□□ 1.33
VPS28-213ENST00000530983 CHPF2Q9P2E5 772 aa23.36■■□□□ 1.33
VPS28-213ENST00000530983 NFAT5O94916 1531 aa23.36■■□□□ 1.33
VPS28-213ENST00000530983 SYCE3A1L190 88 aa23.35■■□□□ 1.33
VPS28-213ENST00000530983 MBD3O95983 291 aa23.35■■□□□ 1.33
VPS28-213ENST00000530983 BEND3Q5T5X7 828 aa23.34■■□□□ 1.33
VPS28-213ENST00000530983 NBPF6Q5VWK0 638 aa23.34■■□□□ 1.33
VPS28-213ENST00000530983 IP6K1Q92551 441 aa23.34■■□□□ 1.33
VPS28-213ENST00000530983 NBPF4Q96M43 638 aa23.34■■□□□ 1.33
VPS28-213ENST00000530983 CRYBG1Q9Y4K1 1723 aa23.34■■□□□ 1.33
VPS28-213ENST00000530983 KIF1BPQ96EK5 621 aa23.34■■□□□ 1.33
VPS28-213ENST00000530983 RGPD2P0DJD1 1756 aa23.34■■□□□ 1.33
VPS28-213ENST00000530983 RAD50Q92878 1312 aa23.33■■□□□ 1.33
VPS28-213ENST00000530983 HOXB7P09629 217 aa23.33■■□□□ 1.33
VPS28-213ENST00000530983 PI4KAP2A4QPH2 592 aa23.33■■□□□ 1.33
VPS28-213ENST00000530983 SGSM2O43147 1006 aa23.33■■□□□ 1.33
VPS28-213ENST00000530983 PI4KAP1Q8N8J0 262 aa23.33■■□□□ 1.33
VPS28-213ENST00000530983 DNAAF4Q8WXU2 420 aa23.33■■□□□ 1.33
VPS28-213ENST00000530983 LMO7Q8WWI1 1683 aa23.32■■□□□ 1.32
VPS28-213ENST00000530983 KCNQ3O43525 872 aa23.32■■□□□ 1.32
VPS28-213ENST00000530983 PHF8Q9UPP1 1060 aa23.32■■□□□ 1.32
VPS28-213ENST00000530983 HS1BP3Q53T59 392 aa23.31■■□□□ 1.32
VPS28-213ENST00000530983 PLEKHG5O94827 1062 aa23.31■■□□□ 1.32
VPS28-213ENST00000530983 TCHHQ07283 1943 aa23.3■■□□□ 1.32
VPS28-213ENST00000530983 ADCY9O60503 1353 aa23.3■■□□□ 1.32
VPS28-213ENST00000530983 TPM2P07951 284 aa23.3■■□□□ 1.32
VPS28-213ENST00000530983 LSG1Q9H089 658 aaKnown RBP23.3■■□□□ 1.32
VPS28-213ENST00000530983 SNX14Q9Y5W7 946 aa23.3■■□□□ 1.32
VPS28-213ENST00000530983 ANXA1P04083 346 aa23.29■■□□□ 1.32
VPS28-213ENST00000530983 CNTROBQ8N137 903 aa23.29■■□□□ 1.32
VPS28-213ENST00000530983 MSNP26038 577 aaKnown RBP23.28■■□□□ 1.32
VPS28-213ENST00000530983 TTC14Q96N46 770 aa23.28■■□□□ 1.32
VPS28-213ENST00000530983 USP42Q9H9J4 1324 aaKnown RBP23.28■■□□□ 1.32
VPS28-213ENST00000530983 RPAP1Q9BWH6 1393 aaPredicted RBP23.27■■□□□ 1.32
VPS28-213ENST00000530983 PHRF1Q9P1Y6 1649 aaKnown RBP23.27■■□□□ 1.32
VPS28-213ENST00000530983 WDR33Q9C0J8 1336 aaKnown RBP23.27■■□□□ 1.32
VPS28-213ENST00000530983 RASEFQ8IZ41 740 aa23.27■■□□□ 1.32
VPS28-213ENST00000530983 CHD2O14647 1828 aaKnown RBP23.26■■□□□ 1.31
VPS28-213ENST00000530983 HSP90AB4PQ58FF6 505 aa23.26■■□□□ 1.31
VPS28-213ENST00000530983 NOL7Q9UMY1 257 aaKnown RBP23.26■■□□□ 1.31
VPS28-213ENST00000530983 BTBD11A6QL63 1104 aa23.26■■□□□ 1.31
VPS28-213ENST00000530983 FOXD4L6Q3SYB3 417 aaPredicted RBP23.26■■□□□ 1.31
VPS28-213ENST00000530983 AKAP4Q5JQC9 854 aa23.26■■□□□ 1.31
VPS28-213ENST00000530983 FOXD4L3Q6VB84 417 aaPredicted RBP23.26■■□□□ 1.31
VPS28-213ENST00000530983 CHMP4AQ9BY43 222 aa23.26■■□□□ 1.31
VPS28-213ENST00000530983 GDPD2Q9HCC8 539 aa23.26■■□□□ 1.31
VPS28-213ENST00000530983 TEFQ10587 303 aa23.25■■□□□ 1.31
VPS28-213ENST00000530983 EIF2AK3Q9NZJ5 1116 aaKnown RBP23.25■■□□□ 1.31
VPS28-213ENST00000530983 GADD45BO75293 160 aaPredicted RBP23.25■■□□□ 1.31
VPS28-213ENST00000530983 MTX1Q13505 466 aa23.25■■□□□ 1.31
VPS28-213ENST00000530983 ZNF530Q6P9A1 599 aaPredicted RBP23.25■■□□□ 1.31
VPS28-213ENST00000530983 CWC27Q6UX04 472 aaKnown RBP23.25■■□□□ 1.31
VPS28-213ENST00000530983 LRRC59Q96AG4 307 aaKnown RBP23.25■■□□□ 1.31
VPS28-213ENST00000530983 TTC41PQ6P2S7 1318 aa23.24■■□□□ 1.31
VPS28-213ENST00000530983 MPRIPQ6WCQ1 1025 aa23.24■■□□□ 1.31
VPS28-213ENST00000530983 KIAA1211Q6ZU35 1233 aa23.24■■□□□ 1.31
VPS28-213ENST00000530983 OFD1O75665 1012 aa23.24■■□□□ 1.31
VPS28-213ENST00000530983 AK2P54819 239 aa23.24■■□□□ 1.31
VPS28-213ENST00000530983 USP48Q86UV5 1035 aa23.24■■□□□ 1.31
VPS28-213ENST00000530983 SPG7Q9UQ90 795 aa23.24■■□□□ 1.31
VPS28-213ENST00000530983 PXDNQ92626 1479 aa23.23■■□□□ 1.31
VPS28-213ENST00000530983 ZBTB7CA1YPR0 619 aa23.22■■□□□ 1.31
VPS28-213ENST00000530983 GLRX3O76003 335 aaKnown RBP23.22■■□□□ 1.31
VPS28-213ENST00000530983 RUFY3Q7L099 469 aa23.22■■□□□ 1.31
VPS28-213ENST00000530983 DBF4Q9UBU7 674 aaPredicted RBP23.22■■□□□ 1.31
VPS28-213ENST00000530983 RNF214Q8ND24 703 aa23.22■■□□□ 1.31
VPS28-213ENST00000530983 SYAP1Q96A49 352 aaPredicted RBP23.22■■□□□ 1.31
VPS28-213ENST00000530983 RBM33Q96EV2 1170 aaKnown RBP23.22■■□□□ 1.31
VPS28-213ENST00000530983 OS9Q13438 667 aaPredicted RBP23.21■■□□□ 1.31
VPS28-213ENST00000530983 ADGRL3Q9HAR2 1447 aa23.21■■□□□ 1.31
VPS28-213ENST00000530983 KCNH5Q8NCM2 988 aa23.21■■□□□ 1.31
VPS28-213ENST00000530983 TSPY26PQ9H489 355 aa23.21■■□□□ 1.31
VPS28-213ENST00000530983 PLEKHO1Q53GL0 409 aaPredicted RBP23.2■■□□□ 1.3
VPS28-213ENST00000530983 TMEM87AQ8NBN3 555 aa23.2■■□□□ 1.3
VPS28-213ENST00000530983 LARP6Q9BRS8 491 aaKnown RBP23.2■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 106.5 ms