RNA–Protein interactions for RNA: ENST00000527253.2

PRPF40B-204, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 3

Gene PRPF40B, Length 742 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-204ENST00000527253 PXDNLA1KZ92 1463 aa13.93□□□□□ -0.18
PRPF40B-204ENST00000527253 KIF13BQ9NQT8 1826 aa13.93□□□□□ -0.18
PRPF40B-204ENST00000527253 A0A0G2JLW4 131 aa13.93□□□□□ -0.18
PRPF40B-204ENST00000527253 CANXP27824 592 aaKnown RBP13.93□□□□□ -0.18
PRPF40B-204ENST00000527253 PLEKHF1Q96S99 279 aa13.93□□□□□ -0.18
PRPF40B-204ENST00000527253 PARP3Q9Y6F1 533 aa13.93□□□□□ -0.18
PRPF40B-204ENST00000527253 GOLGB1Q14789 3259 aaKnown RBP13.93□□□□□ -0.18
PRPF40B-204ENST00000527253 BTBD11A6QL63 1104 aa13.92□□□□□ -0.18
PRPF40B-204ENST00000527253 DPEP1P16444 411 aa13.92□□□□□ -0.18
PRPF40B-204ENST00000527253 EIF5P55010 431 aaKnown RBP13.92□□□□□ -0.18
PRPF40B-204ENST00000527253 NARFQ9UHQ1 456 aa13.92□□□□□ -0.18
PRPF40B-204ENST00000527253 PRAMEF22A3QJZ6 481 aa13.91□□□□□ -0.18
PRPF40B-204ENST00000527253 POLRMTO00411 1230 aaKnown RBP13.91□□□□□ -0.18
PRPF40B-204ENST00000527253 KCNA3P22001 575 aa13.91□□□□□ -0.18
PRPF40B-204ENST00000527253 TGFB2P61812 414 aa13.91□□□□□ -0.18
PRPF40B-204ENST00000527253 FMNL2Q96PY5 1086 aa13.91□□□□□ -0.18
PRPF40B-204ENST00000527253 COL15A1P39059 1388 aa13.91□□□□□ -0.18
PRPF40B-204ENST00000527253 N4BP2Q86UW6 1770 aaPredicted RBP13.91□□□□□ -0.18
PRPF40B-204ENST00000527253 HTATSF1O43719 755 aaKnown RBP13.9□□□□□ -0.18
PRPF40B-204ENST00000527253 ZPR1O75312 459 aa13.9□□□□□ -0.18
PRPF40B-204ENST00000527253 STARD3NLO95772 234 aa13.9□□□□□ -0.18
PRPF40B-204ENST00000527253 A1BGP04217 495 aa13.9□□□□□ -0.18
PRPF40B-204ENST00000527253 NFIXQ14938 502 aa13.9□□□□□ -0.18
PRPF40B-204ENST00000527253 USP16Q9Y5T5 823 aa13.9□□□□□ -0.18
PRPF40B-204ENST00000527253 RALBP1Q15311 655 aa13.89□□□□□ -0.19
PRPF40B-204ENST00000527253 RTF1Q92541 710 aaKnown RBP13.89□□□□□ -0.19
PRPF40B-204ENST00000527253 MIS18AQ9NYP9 233 aa13.89□□□□□ -0.19
PRPF40B-204ENST00000527253 TEX13AQ9BXU3 409 aaPredicted RBP13.88□□□□□ -0.19
PRPF40B-204ENST00000527253 PIP4K2AP48426 406 aaPredicted RBP13.87□□□□□ -0.19
PRPF40B-204ENST00000527253 THUMPD2Q9BTF0 503 aaKnown RBP13.87□□□□□ -0.19
PRPF40B-204ENST00000527253 TBC1D2BQ9UPU7 963 aa13.87□□□□□ -0.19
PRPF40B-204ENST00000527253 CHRNA5P30532 468 aa13.86□□□□□ -0.19
PRPF40B-204ENST00000527253 IL6STP40189 918 aaPredicted RBP13.86□□□□□ -0.19
PRPF40B-204ENST00000527253 TAF7Q15545 349 aaPredicted RBP13.86□□□□□ -0.19
PRPF40B-204ENST00000527253 NFE2L2Q16236 605 aa13.86□□□□□ -0.19
PRPF40B-204ENST00000527253 BCS1LQ9Y276 419 aa13.86□□□□□ -0.19
PRPF40B-204ENST00000527253 DLG5Q8TDM6 1919 aa13.86□□□□□ -0.19
PRPF40B-204ENST00000527253 A0A087WZG4 1122 aa13.85□□□□□ -0.19
PRPF40B-204ENST00000527253 SERPINB2P05120 415 aa13.85□□□□□ -0.19
PRPF40B-204ENST00000527253 SNRPA1P09661 255 aaKnown RBP13.85□□□□□ -0.19
PRPF40B-204ENST00000527253 TBC1D9BQ66K14 1250 aa13.85□□□□□ -0.19
PRPF40B-204ENST00000527253 ZNF330Q9Y3S2 320 aaPredicted RBP13.85□□□□□ -0.19
PRPF40B-204ENST00000527253 AFDNP55196 1824 aaKnown RBP13.85□□□□□ -0.19
PRPF40B-204ENST00000527253 BRCA1P38398 1863 aaKnown RBP13.84□□□□□ -0.19
PRPF40B-204ENST00000527253 ADCY9O60503 1353 aa13.84□□□□□ -0.19
PRPF40B-204ENST00000527253 ATP10DQ9P241 1426 aa13.84□□□□□ -0.19
PRPF40B-204ENST00000527253 NBPF26B4DH59 902 aa13.84□□□□□ -0.19
PRPF40B-204ENST00000527253 NBPF10Q6P3W6 841 aaKnown RBP13.84□□□□□ -0.19
PRPF40B-204ENST00000527253 BICDL1Q6ZP65 573 aa13.84□□□□□ -0.19
PRPF40B-204ENST00000527253 NBPF15Q8N660 670 aa13.84□□□□□ -0.19
PRPF40B-204ENST00000527253 MYBBP1AQ9BQG0 1328 aaKnown RBP13.84□□□□□ -0.19
PRPF40B-204ENST00000527253 NRXN2Q9P2S2 1712 aa13.84□□□□□ -0.19
PRPF40B-204ENST00000527253 CAMTA2O94983 1202 aa13.83□□□□□ -0.2
PRPF40B-204ENST00000527253 PIM2Q9P1W9 311 aa13.83□□□□□ -0.2
PRPF40B-204ENST00000527253 CARMIL3Q8ND23 1372 aa13.83□□□□□ -0.2
PRPF40B-204ENST00000527253 NEFMP07197 916 aa13.82□□□□□ -0.2
PRPF40B-204ENST00000527253 EIF4A1P60842 406 aaKnown RBP13.81□□□□□ -0.2
PRPF40B-204ENST00000527253 ARHGAP27Q6ZUM4 889 aa13.81□□□□□ -0.2
PRPF40B-204ENST00000527253 DZIP3Q86Y13 1208 aaKnown RBP13.81□□□□□ -0.2
PRPF40B-204ENST00000527253 CCDC24Q8N4L8 307 aa13.81□□□□□ -0.2
PRPF40B-204ENST00000527253 PNNQ9H307 717 aaKnown RBP13.81□□□□□ -0.2
PRPF40B-204ENST00000527253 MAPK8IP3Q9UPT6 1336 aa13.81□□□□□ -0.2
PRPF40B-204ENST00000527253 SCN7AQ01118 1682 aa13.8□□□□□ -0.2
PRPF40B-204ENST00000527253 GIGYF1O75420 1035 aaPredicted RBP13.8□□□□□ -0.2
PRPF40B-204ENST00000527253 RIPK4P57078 832 aa13.8□□□□□ -0.2
PRPF40B-204ENST00000527253 DALRD3Q5D0E6 543 aaKnown RBP13.8□□□□□ -0.2
PRPF40B-204ENST00000527253 CCDC146Q8IYE0 955 aa13.8□□□□□ -0.2
PRPF40B-204ENST00000527253 PNISRQ8TF01 805 aaKnown RBP13.8□□□□□ -0.2
PRPF40B-204ENST00000527253 KDM3BQ7LBC6 1761 aa13.8□□□□□ -0.2
PRPF40B-204ENST00000527253 TMPOP42166 694 aaKnown RBP13.79□□□□□ -0.2
PRPF40B-204ENST00000527253 C1QTNF8P60827 252 aa13.79□□□□□ -0.2
PRPF40B-204ENST00000527253 PRR5LQ6MZQ0 368 aa13.79□□□□□ -0.2
PRPF40B-204ENST00000527253 PRKRIP1Q9H875 184 aaPredicted RBP13.79□□□□□ -0.2
PRPF40B-204ENST00000527253 RRP7AQ9Y3A4 280 aaKnown RBP13.79□□□□□ -0.2
PRPF40B-204ENST00000527253 ARFGEF1Q9Y6D6 1849 aa13.78□□□□□ -0.2
PRPF40B-204ENST00000527253 C2CD5Q86YS7 1000 aa13.78□□□□□ -0.2
PRPF40B-204ENST00000527253 ZNF526Q8TF50 670 aaPredicted RBP13.78□□□□□ -0.2
PRPF40B-204ENST00000527253 ADAMTS8Q9UP79 889 aa13.78□□□□□ -0.2
PRPF40B-204ENST00000527253 BCORQ6W2J9 1755 aa13.77□□□□□ -0.21
PRPF40B-204ENST00000527253 ANKRD31Q8N7Z5 1873 aa13.77□□□□□ -0.21
PRPF40B-204ENST00000527253 SETDB2Q96T68 719 aa13.77□□□□□ -0.21
PRPF40B-204ENST00000527253 HLFQ16534 295 aa13.76□□□□□ -0.21
PRPF40B-204ENST00000527253 NPM2Q86SE8 214 aaKnown RBP13.76□□□□□ -0.21
PRPF40B-204ENST00000527253 BRIP1Q9BX63 1249 aa13.76□□□□□ -0.21
PRPF40B-204ENST00000527253 GPBP1L1Q9HC44 474 aaPredicted RBP13.76□□□□□ -0.21
PRPF40B-204ENST00000527253 H0YIN7 160 aa13.75□□□□□ -0.21
PRPF40B-204ENST00000527253 PRELPP51888 382 aa13.75□□□□□ -0.21
PRPF40B-204ENST00000527253 NEUROD2Q15784 382 aa13.75□□□□□ -0.21
PRPF40B-204ENST00000527253 C9orf131Q5VYM1 1079 aa13.75□□□□□ -0.21
PRPF40B-204ENST00000527253 CLEC4GQ6UXB4 293 aa13.75□□□□□ -0.21
PRPF40B-204ENST00000527253 NGEFQ8N5V2 710 aa13.75□□□□□ -0.21
PRPF40B-204ENST00000527253 TSPYL4Q9UJ04 414 aa13.75□□□□□ -0.21
PRPF40B-204ENST00000527253 TRIM35Q9UPQ4 493 aa13.75□□□□□ -0.21
PRPF40B-204ENST00000527253 LAMB4A4D0S4 1761 aa13.74□□□□□ -0.21
PRPF40B-204ENST00000527253 DLEC1Q9Y238 1755 aa13.74□□□□□ -0.21
PRPF40B-204ENST00000527253 TTLL7Q6ZT98 887 aa13.74□□□□□ -0.21
PRPF40B-204ENST00000527253 TTLL6Q8N841 843 aa13.74□□□□□ -0.21
PRPF40B-204ENST00000527253 RUNDC1Q96C34 613 aa13.74□□□□□ -0.21
PRPF40B-204ENST00000527253 KIF3CO14782 793 aa13.73□□□□□ -0.21
PRPF40B-204ENST00000527253 RASSF7Q02833 373 aa13.73□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms