RNA–Protein interactions for RNA: ENST00000526977.5

VPS28-207, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,036 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-207ENST00000526977 PDE4AP27815 886 aa23.89■■□□□ 1.41
VPS28-207ENST00000526977 ASAP1Q9ULH1 1129 aa23.89■■□□□ 1.41
VPS28-207ENST00000526977 DDX19BQ9UMR2 479 aa23.89■■□□□ 1.41
VPS28-207ENST00000526977 PAPPAQ13219 1627 aa23.88■■□□□ 1.41
VPS28-207ENST00000526977 PRAMEF22A3QJZ6 481 aa23.88■■□□□ 1.41
VPS28-207ENST00000526977 ITPRIPQ8IWB1 547 aa23.88■■□□□ 1.41
VPS28-207ENST00000526977 VSIG10Q8N0Z9 540 aa23.88■■□□□ 1.41
VPS28-207ENST00000526977 ACSBG1Q96GR2 724 aa23.88■■□□□ 1.41
VPS28-207ENST00000526977 PTCD1O75127 700 aaKnown RBP23.87■■□□□ 1.41
VPS28-207ENST00000526977 DOT1LQ8TEK3 1739 aa23.86■■□□□ 1.41
VPS28-207ENST00000526977 UBR2Q8IWV8 1755 aa23.86■■□□□ 1.41
VPS28-207ENST00000526977 KCPQ6ZWJ8 1503 aa23.86■■□□□ 1.41
VPS28-207ENST00000526977 BACH2Q9BYV9 841 aa23.86■■□□□ 1.41
VPS28-207ENST00000526977 CHPF2Q9P2E5 772 aa23.86■■□□□ 1.41
VPS28-207ENST00000526977 CACNA1FO60840 1977 aa23.85■■□□□ 1.41
VPS28-207ENST00000526977 KAT6BQ8WYB5 2073 aa23.85■■□□□ 1.41
VPS28-207ENST00000526977 TEX13AQ9BXU3 409 aaPredicted RBP23.85■■□□□ 1.41
VPS28-207ENST00000526977 USP16Q9Y5T5 823 aa23.85■■□□□ 1.41
VPS28-207ENST00000526977 FLIIQ13045 1269 aa23.84■■□□□ 1.41
VPS28-207ENST00000526977 RWDD1Q9H446 243 aaPredicted RBP23.84■■□□□ 1.41
VPS28-207ENST00000526977 DDX21Q9NR30 783 aaKnown RBP eCLIP23.84■■□□□ 1.41
VPS28-207ENST00000526977 G2E3Q7L622 706 aa23.83■■□□□ 1.41
VPS28-207ENST00000526977 HYPKQ9NX55 129 aa23.83■■□□□ 1.41
VPS28-207ENST00000526977 ZBTB40Q9NUA8 1239 aa23.83■■□□□ 1.4
VPS28-207ENST00000526977 SMARCC1Q92922 1105 aaPredicted RBP23.82■■□□□ 1.4
VPS28-207ENST00000526977 ABCC4O15439 1325 aa23.82■■□□□ 1.4
VPS28-207ENST00000526977 RXRBP28702 533 aa23.81■■□□□ 1.4
VPS28-207ENST00000526977 RBM42Q9BTD8 480 aaKnown RBP23.81■■□□□ 1.4
VPS28-207ENST00000526977 ERBB4Q15303 1308 aa23.81■■□□□ 1.4
VPS28-207ENST00000526977 KCNQ2O43526 872 aa23.81■■□□□ 1.4
VPS28-207ENST00000526977 FKBP5Q13451 457 aaPredicted RBP23.81■■□□□ 1.4
VPS28-207ENST00000526977 RGS3P49796 1198 aa23.8■■□□□ 1.4
VPS28-207ENST00000526977 PDIA6Q15084 440 aa23.8■■□□□ 1.4
VPS28-207ENST00000526977 KRT27Q7Z3Y8 459 aa23.8■■□□□ 1.4
VPS28-207ENST00000526977 PHAXQ9H814 394 aaKnown RBP23.79■■□□□ 1.4
VPS28-207ENST00000526977 C5P01031 1676 aa23.79■■□□□ 1.4
VPS28-207ENST00000526977 CHMP4BQ9H444 224 aaKnown RBP23.78■■□□□ 1.4
VPS28-207ENST00000526977 STARD3NLO95772 234 aa23.77■■□□□ 1.4
VPS28-207ENST00000526977 FAM182BQ5T319 152 aa23.77■■□□□ 1.4
VPS28-207ENST00000526977 ZBTB7BO15156 539 aaPredicted RBP23.77■■□□□ 1.4
VPS28-207ENST00000526977 INTS3Q68E01 1043 aaKnown RBP23.77■■□□□ 1.4
VPS28-207ENST00000526977 FAM196AQ6ZSG2 479 aa23.77■■□□□ 1.4
VPS28-207ENST00000526977 RGS17Q9UGC6 210 aaPredicted RBP23.77■■□□□ 1.4
VPS28-207ENST00000526977 RGS12O14924 1447 aa23.77■■□□□ 1.4
VPS28-207ENST00000526977 MSH5O43196 834 aa23.76■■□□□ 1.39
VPS28-207ENST00000526977 ANXA1P04083 346 aa23.76■■□□□ 1.39
VPS28-207ENST00000526977 HDAC1Q13547 482 aaPredicted RBP23.76■■□□□ 1.39
VPS28-207ENST00000526977 PROSER3Q2NL68 480 aa23.76■■□□□ 1.39
VPS28-207ENST00000526977 LAMB4A4D0S4 1761 aa23.75■■□□□ 1.39
VPS28-207ENST00000526977 DDX58O95786 925 aaKnown RBP23.74■■□□□ 1.39
VPS28-207ENST00000526977 DNAJC10Q8IXB1 793 aa23.74■■□□□ 1.39
VPS28-207ENST00000526977 PALLDQ8WX93 1383 aa23.74■■□□□ 1.39
VPS28-207ENST00000526977 MYL6BP14649 208 aa23.74■■□□□ 1.39
VPS28-207ENST00000526977 CCT4P50991 539 aaKnown RBP23.74■■□□□ 1.39
VPS28-207ENST00000526977 SLC4A9Q96Q91 983 aa23.74■■□□□ 1.39
VPS28-207ENST00000526977 LOC102724428A0A0B4J2F2 783 aa23.73■■□□□ 1.39
VPS28-207ENST00000526977 SIK1P57059 783 aa23.73■■□□□ 1.39
VPS28-207ENST00000526977 PDZRN3Q9UPQ7 1066 aa23.73■■□□□ 1.39
VPS28-207ENST00000526977 F6X3S4 739 aa23.72■■□□□ 1.39
VPS28-207ENST00000526977 A1BGP04217 495 aa23.72■■□□□ 1.39
VPS28-207ENST00000526977 LRP10Q7Z4F1 713 aa23.72■■□□□ 1.39
VPS28-207ENST00000526977 BCL11BQ9C0K0 894 aaPredicted RBP23.72■■□□□ 1.39
VPS28-207ENST00000526977 PI4KAP2A4QPH2 592 aa23.71■■□□□ 1.39
VPS28-207ENST00000526977 SLC4A10Q6U841 1118 aa23.71■■□□□ 1.39
VPS28-207ENST00000526977 KSR2Q6VAB6 950 aa23.71■■□□□ 1.39
VPS28-207ENST00000526977 PI4KAP1Q8N8J0 262 aa23.71■■□□□ 1.39
VPS28-207ENST00000526977 NHSQ6T4R5 1651 aa23.71■■□□□ 1.39
VPS28-207ENST00000526977 NBPF26B4DH59 902 aa23.71■■□□□ 1.39
VPS28-207ENST00000526977 ATP6V1AP38606 617 aa23.71■■□□□ 1.39
VPS28-207ENST00000526977 FAM161AQ3B820 660 aa23.71■■□□□ 1.39
VPS28-207ENST00000526977 NBPF14Q5TI25 921 aa23.71■■□□□ 1.39
VPS28-207ENST00000526977 NBPF10Q6P3W6 841 aaKnown RBP23.71■■□□□ 1.39
VPS28-207ENST00000526977 POTEAQ6S8J7 498 aa23.71■■□□□ 1.39
VPS28-207ENST00000526977 NBPF15Q8N660 670 aa23.71■■□□□ 1.39
VPS28-207ENST00000526977 CYP19A1P11511 503 aaPredicted RBP23.7■■□□□ 1.38
VPS28-207ENST00000526977 COPS6Q7L5N1 327 aa23.7■■□□□ 1.38
VPS28-207ENST00000526977 XAGE3Q8WTP9 111 aa23.69■■□□□ 1.38
VPS28-207ENST00000526977 DNAAF4Q8WXU2 420 aa23.69■■□□□ 1.38
VPS28-207ENST00000526977 AIMP1Q12904 312 aaKnown RBP23.69■■□□□ 1.38
VPS28-207ENST00000526977 C8orf34Q49A92 452 aa23.69■■□□□ 1.38
VPS28-207ENST00000526977 PTF1AQ7RTS3 328 aa23.69■■□□□ 1.38
VPS28-207ENST00000526977 BRWD3Q6RI45 1802 aa23.68■■□□□ 1.38
VPS28-207ENST00000526977 PXDNLA1KZ92 1463 aa23.68■■□□□ 1.38
VPS28-207ENST00000526977 PIP4K2AP48426 406 aaPredicted RBP23.67■■□□□ 1.38
VPS28-207ENST00000526977 ANKRD13DQ6ZTN6 518 aa23.67■■□□□ 1.38
VPS28-207ENST00000526977 SMC5Q8IY18 1101 aa23.67■■□□□ 1.38
VPS28-207ENST00000526977 ADCY9O60503 1353 aa23.66■■□□□ 1.38
VPS28-207ENST00000526977 ANP32AP39687 249 aaKnown RBP23.66■■□□□ 1.38
VPS28-207ENST00000526977 MAP3K2Q9Y2U5 619 aa23.66■■□□□ 1.38
VPS28-207ENST00000526977 SBF2Q86WG5 1849 aa23.66■■□□□ 1.38
VPS28-207ENST00000526977 RIC3Q7Z5B4 369 aa23.66■■□□□ 1.38
VPS28-207ENST00000526977 SRCIN1Q9C0H9 1055 aa23.64■■□□□ 1.38
VPS28-207ENST00000526977 BTAF1O14981 1849 aa23.64■■□□□ 1.37
VPS28-207ENST00000526977 ZNF831Q5JPB2 1677 aa23.64■■□□□ 1.37
VPS28-207ENST00000526977 BEND3Q5T5X7 828 aa23.64■■□□□ 1.37
VPS28-207ENST00000526977 ATP10DQ9P241 1426 aa23.63■■□□□ 1.37
VPS28-207ENST00000526977 ITPK1Q13572 414 aa23.63■■□□□ 1.37
VPS28-207ENST00000526977 PLBD2Q8NHP8 589 aa23.63■■□□□ 1.37
VPS28-207ENST00000526977 C1orf115Q9H7X2 142 aa23.63■■□□□ 1.37
VPS28-207ENST00000526977 CICQ96RK0 1608 aaPredicted RBP23.63■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 115.2 ms