RNA–Protein interactions for RNA: ENST00000524006.5

SPIDR-222, Transcript of scaffold protein involved in DNA repair, human

TSL 5

Gene SPIDR, Length 970 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SPIDR-222	ENST00000524006	ATP10D	Q9P241	1426 aa		13.4	□□□□□ -0.26
SPIDR-222	ENST00000524006	SF3B2	Q13435	895 aa	Known RBP	13.4	□□□□□ -0.26
SPIDR-222	ENST00000524006	FAM98C	Q17RN3	349 aa	Known RBP	13.4	□□□□□ -0.26
SPIDR-222	ENST00000524006	ANKRD44	Q8N8A2	993 aa		13.4	□□□□□ -0.26
SPIDR-222	ENST00000524006	BTG4	Q9NY30	223 aa		13.4	□□□□□ -0.26
SPIDR-222	ENST00000524006	RNMT	O43148	476 aa	Known RBP	13.39	□□□□□ -0.27
SPIDR-222	ENST00000524006	GNAI2	P04899	355 aa		13.39	□□□□□ -0.27
SPIDR-222	ENST00000524006	NRAP	Q86VF7	1730 aa		13.39	□□□□□ -0.27
SPIDR-222	ENST00000524006	KCNA4	P22459	653 aa		13.38	□□□□□ -0.27
SPIDR-222	ENST00000524006	MFAP1	P55081	439 aa	Known RBP	13.38	□□□□□ -0.27
SPIDR-222	ENST00000524006	CASC1	Q6TDU7	716 aa		13.38	□□□□□ -0.27
SPIDR-222	ENST00000524006	MPRIP	Q6WCQ1	1025 aa		13.38	□□□□□ -0.27
SPIDR-222	ENST00000524006	CPD	O75976	1380 aa		13.37	□□□□□ -0.27
SPIDR-222	ENST00000524006		F6X3S4	739 aa		13.37	□□□□□ -0.27
SPIDR-222	ENST00000524006	NPM3	O75607	178 aa	Known RBP	13.37	□□□□□ -0.27
SPIDR-222	ENST00000524006	EIF2S2	P20042	333 aa	Known RBP	13.37	□□□□□ -0.27
SPIDR-222	ENST00000524006	NBR1	Q14596	966 aa		13.37	□□□□□ -0.27
SPIDR-222	ENST00000524006	BMP2KL	Q5H9B9	411 aa		13.37	□□□□□ -0.27
SPIDR-222	ENST00000524006	G2E3	Q7L622	706 aa		13.37	□□□□□ -0.27
SPIDR-222	ENST00000524006	MEIS3	Q99687	375 aa		13.37	□□□□□ -0.27
SPIDR-222	ENST00000524006	BCL11A	Q9H165	835 aa		13.37	□□□□□ -0.27
SPIDR-222	ENST00000524006	SPATA31A5	Q5VU36	1347 aa		13.37	□□□□□ -0.27
SPIDR-222	ENST00000524006	SPATA31A7	Q8IWB4	1347 aa		13.37	□□□□□ -0.27
SPIDR-222	ENST00000524006	TUBGCP6	Q96RT7	1819 aa		13.36	□□□□□ -0.27
SPIDR-222	ENST00000524006		A0A0G2JS52	829 aa		13.36	□□□□□ -0.27
SPIDR-222	ENST00000524006	HSP90AB1	P08238	724 aa	Known RBP	13.36	□□□□□ -0.27
SPIDR-222	ENST00000524006	CEP85	Q6P2H3	762 aa		13.36	□□□□□ -0.27
SPIDR-222	ENST00000524006	MEGF6	O75095	1541 aa		13.35	□□□□□ -0.27
SPIDR-222	ENST00000524006	UBTFL1	P0CB47	393 aa	Predicted RBP	13.35	□□□□□ -0.27
SPIDR-222	ENST00000524006	EIF4A1	P60842	406 aa	Known RBP	13.35	□□□□□ -0.27
SPIDR-222	ENST00000524006	FAM182B	Q5T319	152 aa		13.35	□□□□□ -0.27
SPIDR-222	ENST00000524006	LGR6	Q9HBX8	967 aa		13.35	□□□□□ -0.27
SPIDR-222	ENST00000524006	PRDM11	Q9NQV5	511 aa		13.35	□□□□□ -0.27
SPIDR-222	ENST00000524006	HDAC5	Q9UQL6	1122 aa		13.35	□□□□□ -0.27
SPIDR-222	ENST00000524006	COL14A1	Q05707	1796 aa	Known RBP	13.35	□□□□□ -0.27
SPIDR-222	ENST00000524006	ARFGEF2	Q9Y6D5	1785 aa		13.35	□□□□□ -0.27
SPIDR-222	ENST00000524006	PSD	A5PKW4	1024 aa	Predicted RBP	13.34	□□□□□ -0.27
SPIDR-222	ENST00000524006	APBB1	O00213	710 aa		13.34	□□□□□ -0.27
SPIDR-222	ENST00000524006	CDC45	O75419	566 aa		13.34	□□□□□ -0.27
SPIDR-222	ENST00000524006	DDX58	O95786	925 aa	Known RBP	13.34	□□□□□ -0.27
SPIDR-222	ENST00000524006	BAG6	P46379	1132 aa		13.34	□□□□□ -0.27
SPIDR-222	ENST00000524006	TBC1D32	Q96NH3	1257 aa		13.34	□□□□□ -0.27
SPIDR-222	ENST00000524006	DCTPP1	Q9H773	170 aa		13.34	□□□□□ -0.27
SPIDR-222	ENST00000524006	MRC1	P22897	1456 aa		13.34	□□□□□ -0.27
SPIDR-222	ENST00000524006	WNK3	Q9BYP7	1800 aa		13.34	□□□□□ -0.27
SPIDR-222	ENST00000524006	EN1	Q05925	392 aa	Predicted RBP	13.33	□□□□□ -0.28
SPIDR-222	ENST00000524006	CHRNA2	Q15822	529 aa		13.33	□□□□□ -0.28
SPIDR-222	ENST00000524006	TTC5	Q8N0Z6	440 aa		13.33	□□□□□ -0.28
SPIDR-222	ENST00000524006	C22orf23	Q9BZE7	217 aa		13.33	□□□□□ -0.28
SPIDR-222	ENST00000524006	SRCIN1	Q9C0H9	1055 aa		13.33	□□□□□ -0.28
SPIDR-222	ENST00000524006	BCLAF1	Q9NYF8	920 aa	Known RBP eCLIP	13.33	□□□□□ -0.28	6e-7	■■■■□ 21.8
SPIDR-222	ENST00000524006	CHPF2	Q9P2E5	772 aa		13.33	□□□□□ -0.28
SPIDR-222	ENST00000524006	DBF4	Q9UBU7	674 aa	Predicted RBP	13.33	□□□□□ -0.28
SPIDR-222	ENST00000524006	AXIN2	Q9Y2T1	843 aa		13.33	□□□□□ -0.28
SPIDR-222	ENST00000524006	SIRT2	Q8IXJ6	389 aa		13.32	□□□□□ -0.28
SPIDR-222	ENST00000524006	IFNL2	Q8IZJ0	200 aa		13.32	□□□□□ -0.28
SPIDR-222	ENST00000524006	SHANK3	Q9BYB0	1731 aa		13.32	□□□□□ -0.28
SPIDR-222	ENST00000524006	UBR2	Q8IWV8	1755 aa		13.32	□□□□□ -0.28
SPIDR-222	ENST00000524006	LRP5	O75197	1615 aa		13.31	□□□□□ -0.28
SPIDR-222	ENST00000524006	THSD7A	Q9UPZ6	1657 aa		13.31	□□□□□ -0.28
SPIDR-222	ENST00000524006	HSCB	Q8IWL3	235 aa		13.31	□□□□□ -0.28
SPIDR-222	ENST00000524006	SPATA31A1	Q5TZJ5	1347 aa		13.31	□□□□□ -0.28
SPIDR-222	ENST00000524006	PAPPA	Q13219	1627 aa		13.31	□□□□□ -0.28
SPIDR-222	ENST00000524006	SEC24B	O95487	1268 aa		13.3	□□□□□ -0.28
SPIDR-222	ENST00000524006	TOM1L2	Q6ZVM7	507 aa		13.3	□□□□□ -0.28
SPIDR-222	ENST00000524006	DNAAF4	Q8WXU2	420 aa		13.3	□□□□□ -0.28
SPIDR-222	ENST00000524006	HYPK	Q9NX55	129 aa		13.3	□□□□□ -0.28
SPIDR-222	ENST00000524006	PCDH11X	Q9BZA7	1347 aa		13.3	□□□□□ -0.28
SPIDR-222	ENST00000524006	PCDH11Y	Q9BZA8	1340 aa		13.3	□□□□□ -0.28
SPIDR-222	ENST00000524006	DISP2	A7MBM2	1401 aa		13.3	□□□□□ -0.28
SPIDR-222	ENST00000524006	KDM6A	O15550	1401 aa	Predicted RBP	13.3	□□□□□ -0.28
SPIDR-222	ENST00000524006	COL5A2	P05997	1499 aa	Predicted RBP	13.29	□□□□□ -0.28
SPIDR-222	ENST00000524006	KAT6B	Q8WYB5	2073 aa		13.29	□□□□□ -0.28
SPIDR-222	ENST00000524006	PHKG2	P15735	406 aa		13.29	□□□□□ -0.28
SPIDR-222	ENST00000524006	TTC22	Q5TAA0	569 aa		13.29	□□□□□ -0.28
SPIDR-222	ENST00000524006	DCAF5	Q96JK2	942 aa		13.29	□□□□□ -0.28
SPIDR-222	ENST00000524006	SLC52A2	Q9HAB3	445 aa		13.29	□□□□□ -0.28
SPIDR-222	ENST00000524006	LRRFIP2	Q9Y608	721 aa	Known RBP	13.29	□□□□□ -0.28
SPIDR-222	ENST00000524006	LRRCC1	Q9C099	1032 aa		13.28	□□□□□ -0.28
SPIDR-222	ENST00000524006	WDR17	Q8IZU2	1322 aa		13.28	□□□□□ -0.28
SPIDR-222	ENST00000524006	ITGB4	P16144	1822 aa		13.27	□□□□□ -0.28
SPIDR-222	ENST00000524006	KCNQ3	O43525	872 aa		13.27	□□□□□ -0.29
SPIDR-222	ENST00000524006	SLC4A3	P48751	1232 aa		13.27	□□□□□ -0.29
SPIDR-222	ENST00000524006	CABP4	P57796	275 aa		13.27	□□□□□ -0.29
SPIDR-222	ENST00000524006	EVA1C	P58658	441 aa		13.27	□□□□□ -0.29
SPIDR-222	ENST00000524006	NEXN	Q0ZGT2	675 aa		13.27	□□□□□ -0.29
SPIDR-222	ENST00000524006	OS9	Q13438	667 aa	Predicted RBP	13.27	□□□□□ -0.29
SPIDR-222	ENST00000524006	R3HDM1	Q15032	1099 aa	Known RBP	13.27	□□□□□ -0.29
SPIDR-222	ENST00000524006	EZH2	Q15910	746 aa	Known RBP	13.27	□□□□□ -0.29
SPIDR-222	ENST00000524006	HSP90AB4P	Q58FF6	505 aa		13.27	□□□□□ -0.29
SPIDR-222	ENST00000524006	PLEKHM2	Q8IWE5	1019 aa		13.27	□□□□□ -0.29
SPIDR-222	ENST00000524006	PHAX	Q9H814	394 aa	Known RBP	13.27	□□□□□ -0.29
SPIDR-222	ENST00000524006	STRN4	Q9NRL3	753 aa		13.27	□□□□□ -0.29
SPIDR-222	ENST00000524006	USP35	Q9P2H5	1018 aa		13.27	□□□□□ -0.29
SPIDR-222	ENST00000524006	GIGYF1	O75420	1035 aa	Predicted RBP	13.26	□□□□□ -0.29
SPIDR-222	ENST00000524006	ALDH1L1	O75891	902 aa		13.26	□□□□□ -0.29
SPIDR-222	ENST00000524006	ATP8B2	P98198	1209 aa		13.26	□□□□□ -0.29
SPIDR-222	ENST00000524006	NUP188	Q5SRE5	1749 aa		13.26	□□□□□ -0.29
SPIDR-222	ENST00000524006	TBC1D9	Q6ZT07	1266 aa		13.26	□□□□□ -0.29
SPIDR-222	ENST00000524006	CAMKK2	Q96RR4	588 aa		13.26	□□□□□ -0.29

Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms