RNA–Protein interactions for RNA: ENST00000520579.5

PDGFRB-207, Transcript of platelet derived growth factor receptor beta, humanhuman

TSL 1 (best)

Gene PDGFRB, Length 3,860 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFRB-207ENST00000520579 TYRO3Q06418 890 aa11.95□□□□□ -0.5
PDGFRB-207ENST00000520579 KMT5BQ4FZB7 885 aa11.95□□□□□ -0.5
PDGFRB-207ENST00000520579 DNAJC21Q5F1R6 531 aaKnown RBP11.95□□□□□ -0.5
PDGFRB-207ENST00000520579 CACTINQ8WUQ7 758 aaKnown RBP11.95□□□□□ -0.5
PDGFRB-207ENST00000520579 EPC1Q9H2F5 836 aa11.95□□□□□ -0.5
PDGFRB-207ENST00000520579 PPP6R1Q9UPN7 881 aa11.95□□□□□ -0.5
PDGFRB-207ENST00000520579 SCAPERQ9BY12 1400 aa11.95□□□□□ -0.5
PDGFRB-207ENST00000520579 SYCP2Q9BX26 1530 aa11.94□□□□□ -0.5
PDGFRB-207ENST00000520579 BECN2A8MW95 431 aa11.94□□□□□ -0.5
PDGFRB-207ENST00000520579 ANKRD44Q8N8A2 993 aa11.94□□□□□ -0.5
PDGFRB-207ENST00000520579 JAKMIP1Q96N16 626 aaKnown RBP11.94□□□□□ -0.5
PDGFRB-207ENST00000520579 SH3BP1Q9Y3L3 701 aa11.94□□□□□ -0.5
PDGFRB-207ENST00000520579 ATP10BO94823 1461 aa11.94□□□□□ -0.5
PDGFRB-207ENST00000520579 HMMRO75330 724 aa11.94□□□□□ -0.5
PDGFRB-207ENST00000520579 PTPN14Q15678 1187 aa11.94□□□□□ -0.5
PDGFRB-207ENST00000520579 MAP3K11Q16584 847 aa11.94□□□□□ -0.5
PDGFRB-207ENST00000520579 EFCAB2Q5VUJ9 269 aa11.94□□□□□ -0.5
PDGFRB-207ENST00000520579 FBXO38Q6PIJ6 1188 aa11.94□□□□□ -0.5
PDGFRB-207ENST00000520579 CALR3Q96L12 384 aaKnown RBP11.94□□□□□ -0.5
PDGFRB-207ENST00000520579 ADGBQ8N7X0 1667 aa11.94□□□□□ -0.5
PDGFRB-207ENST00000520579 PTPRTO14522 1441 aa11.94□□□□□ -0.5
PDGFRB-207ENST00000520579 ANKRD65E5RJM6 399 aa11.94□□□□□ -0.5
PDGFRB-207ENST00000520579 TERF2Q15554 542 aa11.94□□□□□ -0.5
PDGFRB-207ENST00000520579 ERCC6LQ2NKX8 1250 aa11.94□□□□□ -0.5
PDGFRB-207ENST00000520579 UVSSAQ2YD98 709 aa11.94□□□□□ -0.5
PDGFRB-207ENST00000520579 NOL10Q9BSC4 688 aaKnown RBP11.94□□□□□ -0.5
PDGFRB-207ENST00000520579 FEZ2Q9UHY8 353 aaPredicted RBP11.94□□□□□ -0.5
PDGFRB-207ENST00000520579 NFE2L2Q16236 605 aa11.93□□□□□ -0.5
PDGFRB-207ENST00000520579 CCDC144BQ3MJ40 725 aa11.93□□□□□ -0.5
PDGFRB-207ENST00000520579 ISM2Q6H9L7 571 aa11.93□□□□□ -0.5
PDGFRB-207ENST00000520579 CCDC144CPQ8IYA2 1237 aa11.93□□□□□ -0.5
PDGFRB-207ENST00000520579 KIF18AQ8NI77 898 aa11.93□□□□□ -0.5
PDGFRB-207ENST00000520579 CCDC34Q96HJ3 373 aa11.93□□□□□ -0.5
PDGFRB-207ENST00000520579 CBX8Q9HC52 389 aa11.93□□□□□ -0.5
PDGFRB-207ENST00000520579 ZCCHC17Q9NP64 241 aaKnown RBP11.93□□□□□ -0.5
PDGFRB-207ENST00000520579 F13A1P00488 732 aa11.93□□□□□ -0.5
PDGFRB-207ENST00000520579 LARP1BQ659C4 914 aaKnown RBP11.93□□□□□ -0.5
PDGFRB-207ENST00000520579 ANKRD7Q92527 254 aa11.93□□□□□ -0.5
PDGFRB-207ENST00000520579 NCAPGQ9BPX3 1015 aa11.93□□□□□ -0.5
PDGFRB-207ENST00000520579 RASSF4Q9H2L5 321 aa11.93□□□□□ -0.5
PDGFRB-207ENST00000520579 NPC1L1Q9UHC9 1359 aa11.93□□□□□ -0.5
PDGFRB-207ENST00000520579 CLASP1Q7Z460 1538 aa11.93□□□□□ -0.5
PDGFRB-207ENST00000520579 UGGT1Q9NYU2 1555 aa11.93□□□□□ -0.5
PDGFRB-207ENST00000520579 PRPF40BQ6NWY9 871 aaKnown RBP11.93□□□□□ -0.5
PDGFRB-207ENST00000520579 RASEFQ8IZ41 740 aa11.93□□□□□ -0.5
PDGFRB-207ENST00000520579 FEZ1Q99689 392 aa11.93□□□□□ -0.5
PDGFRB-207ENST00000520579 ZSWIM4Q9H7M6 989 aa11.93□□□□□ -0.5
PDGFRB-207ENST00000520579 SPTLC3Q9NUV7 552 aa11.93□□□□□ -0.5
PDGFRB-207ENST00000520579 TERF2IPQ9NYB0 399 aa11.93□□□□□ -0.5
PDGFRB-207ENST00000520579 STAG3Q9UJ98 1225 aa11.93□□□□□ -0.5
PDGFRB-207ENST00000520579 ZNF165P49910 485 aa11.92□□□□□ -0.5
PDGFRB-207ENST00000520579 HNRNPH2P55795 449 aaKnown RBP11.92□□□□□ -0.5
PDGFRB-207ENST00000520579 SATB1Q01826 763 aa11.92□□□□□ -0.5
PDGFRB-207ENST00000520579 MSH6P52701 1360 aa11.92□□□□□ -0.5
PDGFRB-207ENST00000520579 NOS1P29475 1434 aa11.92□□□□□ -0.5
PDGFRB-207ENST00000520579 CHMLP26374 656 aa11.92□□□□□ -0.5
PDGFRB-207ENST00000520579 ZSCAN25Q6NSZ9 544 aa11.92□□□□□ -0.5
PDGFRB-207ENST00000520579 SMTNL1A8MU46 457 aa11.92□□□□□ -0.5
PDGFRB-207ENST00000520579 SURF6O75683 361 aaKnown RBP11.92□□□□□ -0.5
PDGFRB-207ENST00000520579 SKILP12757 684 aa11.92□□□□□ -0.5
PDGFRB-207ENST00000520579 MAP2K1Q02750 393 aaPredicted RBP11.92□□□□□ -0.5
PDGFRB-207ENST00000520579 HDGFL2Q7Z4V5 671 aaPredicted RBP11.92□□□□□ -0.5
PDGFRB-207ENST00000520579 LRRN4CLQ8ND94 238 aa11.92□□□□□ -0.5
PDGFRB-207ENST00000520579 PRAM1Q96QH2 718 aa11.92□□□□□ -0.5
PDGFRB-207ENST00000520579 DDX41Q9UJV9 622 aaKnown RBP11.92□□□□□ -0.5
PDGFRB-207ENST00000520579 MPHOSPH10O00566 681 aaKnown RBP11.91□□□□□ -0.5
PDGFRB-207ENST00000520579 GABPB1Q06547 395 aaPredicted RBP11.91□□□□□ -0.5
PDGFRB-207ENST00000520579 SART3Q15020 963 aaKnown RBP11.91□□□□□ -0.5
PDGFRB-207ENST00000520579 PNMA6EA0A0J9YXQ4 647 aa11.91□□□□□ -0.5
PDGFRB-207ENST00000520579 LRRCC1Q9C099 1032 aa11.91□□□□□ -0.5
PDGFRB-207ENST00000520579 SEC31AO94979 1220 aaKnown RBP11.91□□□□□ -0.5
PDGFRB-207ENST00000520579 FAM200AQ8TCP9 573 aa11.91□□□□□ -0.5
PDGFRB-207ENST00000520579 SIRT1Q96EB6 747 aa11.91□□□□□ -0.5
PDGFRB-207ENST00000520579 ZNF513Q8N8E2 541 aaPredicted RBP11.9□□□□□ -0.5
PDGFRB-207ENST00000520579 GUCY1B3Q02153 619 aa11.9□□□□□ -0.5
PDGFRB-207ENST00000520579 HSP90AA4PQ58FG1 418 aa11.9□□□□□ -0.5
PDGFRB-207ENST00000520579 SULT6B1Q6IMI4 303 aa11.9□□□□□ -0.5
PDGFRB-207ENST00000520579 TTC6Q86TZ1 520 aa11.9□□□□□ -0.5
PDGFRB-207ENST00000520579 STK11IPQ8N1F8 1099 aa11.9□□□□□ -0.5
PDGFRB-207ENST00000520579 ZNF518AQ6AHZ1 1483 aa11.9□□□□□ -0.5
PDGFRB-207ENST00000520579 NCKAP5LQ9HCH0 1330 aa11.9□□□□□ -0.5
PDGFRB-207ENST00000520579 MCM2P49736 904 aa11.9□□□□□ -0.5
PDGFRB-207ENST00000520579 BIRC2Q13490 618 aa11.9□□□□□ -0.5
PDGFRB-207ENST00000520579 SYT10Q6XYQ8 523 aa11.9□□□□□ -0.5
PDGFRB-207ENST00000520579 NME9Q86XW9 330 aa11.9□□□□□ -0.5
PDGFRB-207ENST00000520579 DEF6Q9H4E7 631 aa11.9□□□□□ -0.5
PDGFRB-207ENST00000520579 KANK1Q14678 1352 aa11.9□□□□□ -0.51
PDGFRB-207ENST00000520579 ERCC6L2Q5T890 1561 aa11.9□□□□□ -0.51
PDGFRB-207ENST00000520579 BIN1O00499 593 aa11.89□□□□□ -0.51
PDGFRB-207ENST00000520579 SMC2O95347 1197 aa11.89□□□□□ -0.51
PDGFRB-207ENST00000520579 SSR1P43307 286 aaKnown RBP11.89□□□□□ -0.51
PDGFRB-207ENST00000520579 SPATA32Q96LK8 384 aa11.89□□□□□ -0.51
PDGFRB-207ENST00000520579 TRIM66O15016 1216 aa11.89□□□□□ -0.51
PDGFRB-207ENST00000520579 DHX16O60231 1041 aaKnown RBP11.89□□□□□ -0.51
PDGFRB-207ENST00000520579 RUFY3Q7L099 469 aa11.89□□□□□ -0.51
PDGFRB-207ENST00000520579 CDC37L1Q7L3B6 337 aa11.89□□□□□ -0.51
PDGFRB-207ENST00000520579 RPAP2Q8IXW5 612 aaPredicted RBP11.89□□□□□ -0.51
PDGFRB-207ENST00000520579 LRRFIP2Q9Y608 721 aaKnown RBP11.89□□□□□ -0.51
PDGFRB-207ENST00000520579 CFAP65Q6ZU64 1925 aaKnown RBP11.89□□□□□ -0.51
PDGFRB-207ENST00000520579 ICE2Q659A1 982 aa11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms