RNA–Protein interactions for RNA: ENST00000515785.1

LIMCH1-221, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best)

Gene LIMCH1, Length 1,129 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-221ENST00000515785 KDM6AO15550 1401 aaPredicted RBP15.43■□□□□ 0.06
LIMCH1-221ENST00000515785 HSP90AB1P08238 724 aaKnown RBP15.43■□□□□ 0.06
LIMCH1-221ENST00000515785 EIF4A2Q14240 407 aaKnown RBP15.43■□□□□ 0.06
LIMCH1-221ENST00000515785 NCBP3Q53F19 620 aaKnown RBP15.43■□□□□ 0.06
LIMCH1-221ENST00000515785 DPY19L2Q6NUT2 758 aa15.43■□□□□ 0.06
LIMCH1-221ENST00000515785 ZNF530Q6P9A1 599 aaPredicted RBP15.43■□□□□ 0.06
LIMCH1-221ENST00000515785 INTS5Q6P9B9 1019 aaKnown RBP15.43■□□□□ 0.06
LIMCH1-221ENST00000515785 TTLL6Q8N841 843 aa15.43■□□□□ 0.06
LIMCH1-221ENST00000515785 NFATC2IPQ8NCF5 419 aa15.43■□□□□ 0.06
LIMCH1-221ENST00000515785 POLKQ9UBT6 870 aa15.43■□□□□ 0.06
LIMCH1-221ENST00000515785 TIAM2Q8IVF5 1701 aa15.43■□□□□ 0.06
LIMCH1-221ENST00000515785 MTHFSP49914 203 aa15.42■□□□□ 0.06
LIMCH1-221ENST00000515785 PLEKHO1Q53GL0 409 aaPredicted RBP15.42■□□□□ 0.06
LIMCH1-221ENST00000515785 C2CD5Q86YS7 1000 aa15.42■□□□□ 0.06
LIMCH1-221ENST00000515785 CREBZFQ9NS37 354 aa15.42■□□□□ 0.06
LIMCH1-221ENST00000515785 AFDNP55196 1824 aaKnown RBP15.41■□□□□ 0.06
LIMCH1-221ENST00000515785 NFKBIEO00221 500 aa15.41■□□□□ 0.06
LIMCH1-221ENST00000515785 POTEIP0CG38 1075 aa15.41■□□□□ 0.06
LIMCH1-221ENST00000515785 POTEJP0CG39 1038 aa15.41■□□□□ 0.06
LIMCH1-221ENST00000515785 CHADLQ6NUI6 762 aa15.41■□□□□ 0.06
LIMCH1-221ENST00000515785 NFIXQ14938 502 aa15.4■□□□□ 0.06
LIMCH1-221ENST00000515785 AIDAQ96BJ3 306 aa15.4■□□□□ 0.06
LIMCH1-221ENST00000515785 PRDM10Q9NQV6 1147 aa15.4■□□□□ 0.06
LIMCH1-221ENST00000515785 H0YIN7 160 aa15.39■□□□□ 0.05
LIMCH1-221ENST00000515785 SERPINB2P05120 415 aa15.39■□□□□ 0.05
LIMCH1-221ENST00000515785 DNAJC10Q8IXB1 793 aa15.39■□□□□ 0.05
LIMCH1-221ENST00000515785 ANKRD26Q9UPS8 1709 aa15.39■□□□□ 0.05
LIMCH1-221ENST00000515785 TJP1Q07157 1748 aa15.38■□□□□ 0.05
LIMCH1-221ENST00000515785 CTCFP49711 727 aaPredicted RBP15.38■□□□□ 0.05
LIMCH1-221ENST00000515785 LBX1P52954 281 aa15.38■□□□□ 0.05
LIMCH1-221ENST00000515785 FAM161AQ3B820 660 aa15.38■□□□□ 0.05
LIMCH1-221ENST00000515785 ERFEQ4G0M1 354 aa15.38■□□□□ 0.05
LIMCH1-221ENST00000515785 ZNF622Q969S3 477 aaKnown RBP eCLIP15.38■□□□□ 0.05
LIMCH1-221ENST00000515785 C21orf2O43822 256 aa15.37■□□□□ 0.05
LIMCH1-221ENST00000515785 DDNO94850 711 aaPredicted RBP15.37■□□□□ 0.05
LIMCH1-221ENST00000515785 VEGFBP49765 207 aa15.37■□□□□ 0.05
LIMCH1-221ENST00000515785 C1orf141Q5JVX7 400 aa15.37■□□□□ 0.05
LIMCH1-221ENST00000515785 BICDL1Q6ZP65 573 aa15.37■□□□□ 0.05
LIMCH1-221ENST00000515785 ADAMTS7Q9UKP4 1686 aa15.37■□□□□ 0.05
LIMCH1-221ENST00000515785 CDCA8Q53HL2 280 aa15.36■□□□□ 0.05
LIMCH1-221ENST00000515785 DLEC1Q9Y238 1755 aa15.36■□□□□ 0.05
LIMCH1-221ENST00000515785 CNTNAP1P78357 1384 aa15.36■□□□□ 0.05
LIMCH1-221ENST00000515785 AMOTQ4VCS5 1084 aa15.35■□□□□ 0.05
LIMCH1-221ENST00000515785 CCDC24Q8N4L8 307 aa15.35■□□□□ 0.05
LIMCH1-221ENST00000515785 BCL2L12Q9HB09 334 aa15.35■□□□□ 0.05
LIMCH1-221ENST00000515785 NARFQ9UHQ1 456 aa15.35■□□□□ 0.05
LIMCH1-221ENST00000515785 SOS1Q07889 1333 aaPredicted RBP15.35■□□□□ 0.05
LIMCH1-221ENST00000515785 CARMIL3Q8ND23 1372 aa15.35■□□□□ 0.05
LIMCH1-221ENST00000515785 CYP19A1P11511 503 aaPredicted RBP15.34■□□□□ 0.05
LIMCH1-221ENST00000515785 AEBP1Q8IUX7 1158 aa15.34■□□□□ 0.05
LIMCH1-221ENST00000515785 ABHD8Q96I13 439 aa15.34■□□□□ 0.05
LIMCH1-221ENST00000515785 DICER1Q9UPY3 1922 aaKnown RBP15.34■□□□□ 0.05
LIMCH1-221ENST00000515785 POLR3GLQ9BT43 218 aa15.33■□□□□ 0.04
LIMCH1-221ENST00000515785 NRXN2Q9P2S2 1712 aa15.32■□□□□ 0.04
LIMCH1-221ENST00000515785 SLC39A6Q13433 755 aa15.32■□□□□ 0.04
LIMCH1-221ENST00000515785 WBP1LQ9NX94 342 aa15.32■□□□□ 0.04
LIMCH1-221ENST00000515785 CLEC11AQ9Y240 323 aa15.32■□□□□ 0.04
LIMCH1-221ENST00000515785 CCDC85CA6NKD9 419 aa15.31■□□□□ 0.04
LIMCH1-221ENST00000515785 TMEM88BA6NKF7 163 aa15.31■□□□□ 0.04
LIMCH1-221ENST00000515785 CANXP27824 592 aaKnown RBP15.31■□□□□ 0.04
LIMCH1-221ENST00000515785 EAPPQ56P03 285 aaPredicted RBP15.31■□□□□ 0.04
LIMCH1-221ENST00000515785 ZBTB1Q9Y2K1 713 aa15.31■□□□□ 0.04
LIMCH1-221ENST00000515785 COL15A1P39059 1388 aa15.3■□□□□ 0.04
LIMCH1-221ENST00000515785 FER1L6Q2WGJ9 1857 aa15.3■□□□□ 0.04
LIMCH1-221ENST00000515785 PASKQ96RG2 1323 aa15.3■□□□□ 0.04
LIMCH1-221ENST00000515785 LGR6Q9HBX8 967 aa15.3■□□□□ 0.04
LIMCH1-221ENST00000515785 VIRMAQ69YN4 1812 aaKnown RBP15.29■□□□□ 0.04
LIMCH1-221ENST00000515785 HSPA8P11142 646 aaKnown RBP15.29■□□□□ 0.04
LIMCH1-221ENST00000515785 SULT6B1Q6IMI4 303 aa15.29■□□□□ 0.04
LIMCH1-221ENST00000515785 LDHDQ86WU2 507 aa15.29■□□□□ 0.04
LIMCH1-221ENST00000515785 TAOK3Q9H2K8 898 aa15.29■□□□□ 0.04
LIMCH1-221ENST00000515785 ANKRD31Q8N7Z5 1873 aa15.29■□□□□ 0.04
LIMCH1-221ENST00000515785 ITGBL1O95965 494 aaPredicted RBP15.28■□□□□ 0.04
LIMCH1-221ENST00000515785 PDE6BP35913 854 aa15.28■□□□□ 0.04
LIMCH1-221ENST00000515785 TAF1DQ9H5J8 278 aaPredicted RBP15.28■□□□□ 0.04
LIMCH1-221ENST00000515785 CACNA1SQ13698 1873 aa15.28■□□□□ 0.04
LIMCH1-221ENST00000515785 SCN11AQ9UI33 1791 aa15.28■□□□□ 0.04
LIMCH1-221ENST00000515785 MLLT1Q03111 559 aaPredicted RBP15.27■□□□□ 0.04
LIMCH1-221ENST00000515785 DEFB115Q30KQ5 88 aa15.27■□□□□ 0.04
LIMCH1-221ENST00000515785 TBC1D9BQ66K14 1250 aa15.27■□□□□ 0.04
LIMCH1-221ENST00000515785 BRIP1Q9BX63 1249 aa15.27■□□□□ 0.04
LIMCH1-221ENST00000515785 SLC52A2Q9HAB3 445 aa15.27■□□□□ 0.04
LIMCH1-221ENST00000515785 IQCA1LA6NCM1 817 aa15.26■□□□□ 0.03
LIMCH1-221ENST00000515785 SLX4Q8IY92 1834 aa15.26■□□□□ 0.03
LIMCH1-221ENST00000515785 PRR5LQ6MZQ0 368 aa15.25■□□□□ 0.03
LIMCH1-221ENST00000515785 ZNF330Q9Y3S2 320 aaPredicted RBP15.25■□□□□ 0.03
LIMCH1-221ENST00000515785 COL11A2P13942 1736 aaPredicted RBP15.25■□□□□ 0.03
LIMCH1-221ENST00000515785 WDR33Q9C0J8 1336 aaKnown RBP15.24■□□□□ 0.03
LIMCH1-221ENST00000515785 LTBP3Q9NS15 1303 aa15.24■□□□□ 0.03
LIMCH1-221ENST00000515785 NPHP1O15259 732 aa15.24■□□□□ 0.03
LIMCH1-221ENST00000515785 AKAP4Q5JQC9 854 aa15.24■□□□□ 0.03
LIMCH1-221ENST00000515785 MAP1SQ66K74 1059 aaPredicted RBP15.24■□□□□ 0.03
LIMCH1-221ENST00000515785 CFAP44Q96MT7 982 aa15.24■□□□□ 0.03
LIMCH1-221ENST00000515785 PCDH10Q9P2E7 1040 aa15.24■□□□□ 0.03
LIMCH1-221ENST00000515785 ABT1Q9ULW3 272 aaKnown RBP15.24■□□□□ 0.03
LIMCH1-221ENST00000515785 TBC1D2BQ9UPU7 963 aa15.24■□□□□ 0.03
LIMCH1-221ENST00000515785 SCN4AP35499 1836 aa15.23■□□□□ 0.03
LIMCH1-221ENST00000515785 RNMTO43148 476 aaKnown RBP15.23■□□□□ 0.03
LIMCH1-221ENST00000515785 GRM1Q13255 1194 aa15.23■□□□□ 0.03
LIMCH1-221ENST00000515785 PRPF40BQ6NWY9 871 aaKnown RBP15.23■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms