RNA–Protein interactions for RNA: ENST00000515562.1

DDX41-217, Transcript of DEAD-box helicase 41, humanhuman

TSL 1 (best)

Gene DDX41, Length 1,184 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-217ENST00000515562 ZNF496Q96IT1 587 aaPredicted RBP23.33■■□□□ 1.33
DDX41-217ENST00000515562 USPL1Q5W0Q7 1092 aa23.32■■□□□ 1.32
DDX41-217ENST00000515562 TEX13AQ9BXU3 409 aaPredicted RBP23.32■■□□□ 1.32
DDX41-217ENST00000515562 NARFQ9UHQ1 456 aa23.32■■□□□ 1.32
DDX41-217ENST00000515562 BRCA1P38398 1863 aaKnown RBP23.32■■□□□ 1.32
DDX41-217ENST00000515562 DDR1Q08345 913 aa23.31■■□□□ 1.32
DDX41-217ENST00000515562 RTF1Q92541 710 aaKnown RBP23.31■■□□□ 1.32
DDX41-217ENST00000515562 ADCY9O60503 1353 aa23.3■■□□□ 1.32
DDX41-217ENST00000515562 A0A0G2JLW4 131 aa23.3■■□□□ 1.32
DDX41-217ENST00000515562 FMNL2Q96PY5 1086 aa23.3■■□□□ 1.32
DDX41-217ENST00000515562 ATP10DQ9P241 1426 aa23.3■■□□□ 1.32
DDX41-217ENST00000515562 BTBD11A6QL63 1104 aa23.29■■□□□ 1.32
DDX41-217ENST00000515562 POLRMTO00411 1230 aaKnown RBP23.29■■□□□ 1.32
DDX41-217ENST00000515562 GIGYF1O75420 1035 aaPredicted RBP23.28■■□□□ 1.32
DDX41-217ENST00000515562 DPEP1P16444 411 aa23.28■■□□□ 1.32
DDX41-217ENST00000515562 CANXP27824 592 aaKnown RBP23.28■■□□□ 1.32
DDX41-217ENST00000515562 TM4SF1P30408 202 aa23.28■■□□□ 1.32
DDX41-217ENST00000515562 SCN7AQ01118 1682 aa23.28■■□□□ 1.32
DDX41-217ENST00000515562 A0A087WZG4 1122 aa23.27■■□□□ 1.32
DDX41-217ENST00000515562 HTATSF1O43719 755 aaKnown RBP23.27■■□□□ 1.32
DDX41-217ENST00000515562 NEFMP07197 916 aa23.27■■□□□ 1.32
DDX41-217ENST00000515562 BCS1LQ9Y276 419 aa23.27■■□□□ 1.32
DDX41-217ENST00000515562 NRXN2Q9P2S2 1712 aa23.26■■□□□ 1.31
DDX41-217ENST00000515562 EIF5P55010 431 aaKnown RBP23.26■■□□□ 1.31
DDX41-217ENST00000515562 ARFGEF1Q9Y6D6 1849 aa23.25■■□□□ 1.31
DDX41-217ENST00000515562 MCM10Q7L590 875 aa23.25■■□□□ 1.31
DDX41-217ENST00000515562 AFDNP55196 1824 aaKnown RBP23.24■■□□□ 1.31
DDX41-217ENST00000515562 C1QTNF8P60827 252 aa23.24■■□□□ 1.31
DDX41-217ENST00000515562 NFIXQ14938 502 aa23.24■■□□□ 1.31
DDX41-217ENST00000515562 IL6STP40189 918 aaPredicted RBP23.23■■□□□ 1.31
DDX41-217ENST00000515562 BCL2L12Q9HB09 334 aa23.23■■□□□ 1.31
DDX41-217ENST00000515562 PIM2Q9P1W9 311 aa23.23■■□□□ 1.31
DDX41-217ENST00000515562 KCNA3P22001 575 aa23.22■■□□□ 1.31
DDX41-217ENST00000515562 NPM2Q86SE8 214 aaKnown RBP23.22■■□□□ 1.31
DDX41-217ENST00000515562 KCNQ3O43525 872 aa23.21■■□□□ 1.31
DDX41-217ENST00000515562 ZNF330Q9Y3S2 320 aaPredicted RBP23.21■■□□□ 1.31
DDX41-217ENST00000515562 DLG5Q8TDM6 1919 aa23.2■■□□□ 1.3
DDX41-217ENST00000515562 RALBP1Q15311 655 aa23.2■■□□□ 1.3
DDX41-217ENST00000515562 PNNQ9H307 717 aaKnown RBP23.2■■□□□ 1.3
DDX41-217ENST00000515562 GPBP1L1Q9HC44 474 aaPredicted RBP23.2■■□□□ 1.3
DDX41-217ENST00000515562 DCTN1Q14203 1278 aa23.19■■□□□ 1.3
DDX41-217ENST00000515562 DALRD3Q5D0E6 543 aaKnown RBP23.19■■□□□ 1.3
DDX41-217ENST00000515562 BCORQ6W2J9 1755 aa23.19■■□□□ 1.3
DDX41-217ENST00000515562 DLEC1Q9Y238 1755 aa23.19■■□□□ 1.3
DDX41-217ENST00000515562 SERPINB2P05120 415 aa23.18■■□□□ 1.3
DDX41-217ENST00000515562 SNRPA1P09661 255 aaKnown RBP23.18■■□□□ 1.3
DDX41-217ENST00000515562 ARHGAP27Q6ZUM4 889 aa23.18■■□□□ 1.3
DDX41-217ENST00000515562 MAPK8IP3Q9UPT6 1336 aa23.17■■□□□ 1.3
DDX41-217ENST00000515562 A1BGP04217 495 aa23.17■■□□□ 1.3
DDX41-217ENST00000515562 CHRNA5P30532 468 aa23.17■■□□□ 1.3
DDX41-217ENST00000515562 PLEKHF1Q96S99 279 aa23.17■■□□□ 1.3
DDX41-217ENST00000515562 CARMIL3Q8ND23 1372 aa23.16■■□□□ 1.3
DDX41-217ENST00000515562 TAF7Q15545 349 aaPredicted RBP23.16■■□□□ 1.3
DDX41-217ENST00000515562 TBC1D2BQ9UPU7 963 aa23.16■■□□□ 1.3
DDX41-217ENST00000515562 LAMB4A4D0S4 1761 aa23.16■■□□□ 1.3
DDX41-217ENST00000515562 KDM3BQ7LBC6 1761 aa23.15■■□□□ 1.3
DDX41-217ENST00000515562 NFE2L2Q16236 605 aa23.15■■□□□ 1.3
DDX41-217ENST00000515562 BICDL1Q6ZP65 573 aa23.15■■□□□ 1.3
DDX41-217ENST00000515562 ZNF526Q8TF50 670 aaPredicted RBP23.15■■□□□ 1.3
DDX41-217ENST00000515562 USP16Q9Y5T5 823 aa23.15■■□□□ 1.3
DDX41-217ENST00000515562 TBC1D9BQ66K14 1250 aa23.14■■□□□ 1.29
DDX41-217ENST00000515562 PNISRQ8TF01 805 aaKnown RBP23.14■■□□□ 1.29
DDX41-217ENST00000515562 CAMTA2O94983 1202 aa23.13■■□□□ 1.29
DDX41-217ENST00000515562 DZIP3Q86Y13 1208 aaKnown RBP23.13■■□□□ 1.29
DDX41-217ENST00000515562 SENP3-EIF4A1A0A087X0R7 540 aa23.12■■□□□ 1.29
DDX41-217ENST00000515562 PRAMEF22A3QJZ6 481 aa23.12■■□□□ 1.29
DDX41-217ENST00000515562 DDX10Q13206 875 aaKnown RBP23.12■■□□□ 1.29
DDX41-217ENST00000515562 MYBBP1AQ9BQG0 1328 aaKnown RBP23.1■■□□□ 1.29
DDX41-217ENST00000515562 SETDB2Q96T68 719 aa23.1■■□□□ 1.29
DDX41-217ENST00000515562 PDZRN3Q9UPQ7 1066 aa23.1■■□□□ 1.29
DDX41-217ENST00000515562 ANKRD31Q8N7Z5 1873 aa23.1■■□□□ 1.29
DDX41-217ENST00000515562 H0YIN7 160 aa23.09■■□□□ 1.29
DDX41-217ENST00000515562 C2CD5Q86YS7 1000 aa23.09■■□□□ 1.29
DDX41-217ENST00000515562 ZNF652Q9Y2D9 606 aa23.09■■□□□ 1.29
DDX41-217ENST00000515562 RGL2O15211 777 aa23.08■■□□□ 1.29
DDX41-217ENST00000515562 PIP4K2AP48426 406 aaPredicted RBP23.08■■□□□ 1.29
DDX41-217ENST00000515562 PRR5LQ6MZQ0 368 aa23.08■■□□□ 1.29
DDX41-217ENST00000515562 CLEC4GQ6UXB4 293 aa23.08■■□□□ 1.29
DDX41-217ENST00000515562 BRIP1Q9BX63 1249 aa23.08■■□□□ 1.29
DDX41-217ENST00000515562 PDE6BP35913 854 aa23.07■■□□□ 1.28
DDX41-217ENST00000515562 C9orf131Q5VYM1 1079 aa23.07■■□□□ 1.28
DDX41-217ENST00000515562 TTLL6Q8N841 843 aa23.07■■□□□ 1.28
DDX41-217ENST00000515562 CNBD1Q8NA66 436 aa23.07■■□□□ 1.28
DDX41-217ENST00000515562 MIS18AQ9NYP9 233 aa23.07■■□□□ 1.28
DDX41-217ENST00000515562 COL11A2P13942 1736 aaPredicted RBP23.07■■□□□ 1.28
DDX41-217ENST00000515562 NPHP1O15259 732 aa23.06■■□□□ 1.28
DDX41-217ENST00000515562 NBPF26B4DH59 902 aa23.05■■□□□ 1.28
DDX41-217ENST00000515562 ST5P78524 1137 aa23.05■■□□□ 1.28
DDX41-217ENST00000515562 NBPF10Q6P3W6 841 aaKnown RBP23.05■■□□□ 1.28
DDX41-217ENST00000515562 NBPF15Q8N660 670 aa23.05■■□□□ 1.28
DDX41-217ENST00000515562 THUMPD2Q9BTF0 503 aaKnown RBP23.05■■□□□ 1.28
DDX41-217ENST00000515562 SBF1O95248 1867 aa23.04■■□□□ 1.28
DDX41-217ENST00000515562 KIF3CO14782 793 aa23.03■■□□□ 1.28
DDX41-217ENST00000515562 EIF4A1P60842 406 aaKnown RBP23.03■■□□□ 1.28
DDX41-217ENST00000515562 LMOD3Q0VAK6 560 aa23.03■■□□□ 1.28
DDX41-217ENST00000515562 RNF181Q9P0P0 153 aa23.03■■□□□ 1.28
DDX41-217ENST00000515562 RIPK4P57078 832 aa23.02■■□□□ 1.28
DDX41-217ENST00000515562 NBPF5PQ86XG9 351 aaPredicted RBP23.01■■□□□ 1.27
DDX41-217ENST00000515562 ZNF622Q969S3 477 aaKnown RBP eCLIP23.01■■□□□ 1.271e-8■■□□□ 14.3
DDX41-217ENST00000515562 ZC3H4Q9UPT8 1303 aaKnown RBP23.01■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms