RNA–Protein interactions for RNA: ENST00000513538.1

TCOF1-212, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 5

Gene TCOF1, Length 701 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-212ENST00000513538 SLC52A2Q9HAB3 445 aa13.19□□□□□ -0.3
TCOF1-212ENST00000513538 CYP19A1P11511 503 aaPredicted RBP13.18□□□□□ -0.3
TCOF1-212ENST00000513538 PRELPP51888 382 aa13.18□□□□□ -0.3
TCOF1-212ENST00000513538 AKAP4Q5JQC9 854 aa13.18□□□□□ -0.3
TCOF1-212ENST00000513538 USPL1Q5W0Q7 1092 aa13.18□□□□□ -0.3
TCOF1-212ENST00000513538 RBM46Q8TBY0 533 aaKnown RBP13.18□□□□□ -0.3
TCOF1-212ENST00000513538 BCL2L12Q9HB09 334 aa13.18□□□□□ -0.3
TCOF1-212ENST00000513538 RNF181Q9P0P0 153 aa13.18□□□□□ -0.3
TCOF1-212ENST00000513538 TIAM2Q8IVF5 1701 aa13.18□□□□□ -0.3
TCOF1-212ENST00000513538 ANKRD31Q8N7Z5 1873 aa13.18□□□□□ -0.3
TCOF1-212ENST00000513538 COL15A1P39059 1388 aa13.18□□□□□ -0.3
TCOF1-212ENST00000513538 CARMIL3Q8ND23 1372 aa13.18□□□□□ -0.3
TCOF1-212ENST00000513538 RNMTO43148 476 aaKnown RBP13.17□□□□□ -0.3
TCOF1-212ENST00000513538 HMOX1P09601 288 aa13.17□□□□□ -0.3
TCOF1-212ENST00000513538 RASSF7Q02833 373 aa13.17□□□□□ -0.3
TCOF1-212ENST00000513538 NFIXQ14938 502 aa13.17□□□□□ -0.3
TCOF1-212ENST00000513538 ZBTB1Q9Y2K1 713 aa13.17□□□□□ -0.3
TCOF1-212ENST00000513538 SIPA1L3O60292 1781 aaPredicted RBP13.17□□□□□ -0.3
TCOF1-212ENST00000513538 KNSTRNQ9Y448 316 aa13.16□□□□□ -0.3
TCOF1-212ENST00000513538 COL11A2P13942 1736 aaPredicted RBP13.16□□□□□ -0.3
TCOF1-212ENST00000513538 SCN7AQ01118 1682 aa13.15□□□□□ -0.3
TCOF1-212ENST00000513538 ZPR1O75312 459 aa13.15□□□□□ -0.3
TCOF1-212ENST00000513538 MTHFSDQ2M296 383 aaKnown RBP13.15□□□□□ -0.3
TCOF1-212ENST00000513538 RRAGCQ9HB90 399 aa13.15□□□□□ -0.3
TCOF1-212ENST00000513538 NARFQ9UHQ1 456 aa13.15□□□□□ -0.3
TCOF1-212ENST00000513538 COL3A1P02461 1466 aaPredicted RBP13.15□□□□□ -0.3
TCOF1-212ENST00000513538 KDM2BQ8NHM5 1336 aa13.14□□□□□ -0.31
TCOF1-212ENST00000513538 KLRG1Q96E93 195 aa13.14□□□□□ -0.31
TCOF1-212ENST00000513538 KIF7Q2M1P5 1343 aa13.13□□□□□ -0.31
TCOF1-212ENST00000513538 SERPINB2P05120 415 aa13.13□□□□□ -0.31
TCOF1-212ENST00000513538 FSTL1Q12841 308 aa13.13□□□□□ -0.31
TCOF1-212ENST00000513538 C16orf71Q8IYS4 520 aaPredicted RBP13.12□□□□□ -0.31
TCOF1-212ENST00000513538 JMYQ8N9B5 988 aa13.12□□□□□ -0.31
TCOF1-212ENST00000513538 DICER1Q9UPY3 1922 aaKnown RBP13.11□□□□□ -0.31
TCOF1-212ENST00000513538 CACNA1SQ13698 1873 aa13.11□□□□□ -0.31
TCOF1-212ENST00000513538 FER1L6Q2WGJ9 1857 aa13.11□□□□□ -0.31
TCOF1-212ENST00000513538 NFKBIEO00221 500 aa13.11□□□□□ -0.31
TCOF1-212ENST00000513538 PER1O15534 1290 aaPredicted RBP13.11□□□□□ -0.31
TCOF1-212ENST00000513538 LMNB1P20700 586 aa13.1□□□□□ -0.31
TCOF1-212ENST00000513538 CANXP27824 592 aaKnown RBP13.1□□□□□ -0.31
TCOF1-212ENST00000513538 EIF5P55010 431 aaKnown RBP13.1□□□□□ -0.31
TCOF1-212ENST00000513538 C2CD5Q86YS7 1000 aa13.1□□□□□ -0.31
TCOF1-212ENST00000513538 VSIG10Q8N0Z9 540 aa13.1□□□□□ -0.31
TCOF1-212ENST00000513538 ZC3H4Q9UPT8 1303 aaKnown RBP13.1□□□□□ -0.31
TCOF1-212ENST00000513538 BCORQ6W2J9 1755 aa13.09□□□□□ -0.31
TCOF1-212ENST00000513538 DIAPH1O60610 1272 aaKnown RBP13.09□□□□□ -0.31
TCOF1-212ENST00000513538 COL13A1Q5TAT6 717 aaPredicted RBP13.09□□□□□ -0.31
TCOF1-212ENST00000513538 BICDL1Q6ZP65 573 aa13.09□□□□□ -0.31
TCOF1-212ENST00000513538 TTLL6Q8N841 843 aa13.09□□□□□ -0.31
TCOF1-212ENST00000513538 SMC1BQ8NDV3 1235 aa13.09□□□□□ -0.31
TCOF1-212ENST00000513538 ZNF496Q96IT1 587 aaPredicted RBP13.09□□□□□ -0.31
TCOF1-212ENST00000513538 HEG1Q9ULI3 1381 aa13.08□□□□□ -0.31
TCOF1-212ENST00000513538 ARFGEF2Q9Y6D5 1785 aa13.08□□□□□ -0.32
TCOF1-212ENST00000513538 GLTPD2A6NH11 291 aa13.08□□□□□ -0.32
TCOF1-212ENST00000513538 CC2D1BQ5T0F9 858 aaKnown RBP13.08□□□□□ -0.32
TCOF1-212ENST00000513538 TBC1D9BQ66K14 1250 aa13.08□□□□□ -0.32
TCOF1-212ENST00000513538 CCDC24Q8N4L8 307 aa13.08□□□□□ -0.32
TCOF1-212ENST00000513538 IL17REQ8NFR9 667 aa13.08□□□□□ -0.32
TCOF1-212ENST00000513538 SLX4Q8IY92 1834 aa13.08□□□□□ -0.32
TCOF1-212ENST00000513538 POTECB2RU33 542 aa13.07□□□□□ -0.32
TCOF1-212ENST00000513538 H0YIN7 160 aa13.06□□□□□ -0.32
TCOF1-212ENST00000513538 PRR5LQ6MZQ0 368 aa13.06□□□□□ -0.32
TCOF1-212ENST00000513538 KCNQ3O43525 872 aa13.05□□□□□ -0.32
TCOF1-212ENST00000513538 STARD3NLO95772 234 aa13.05□□□□□ -0.32
TCOF1-212ENST00000513538 VEGFAP15692 232 aaPredicted RBP13.05□□□□□ -0.32
TCOF1-212ENST00000513538 ZNF790Q6PG37 636 aa13.05□□□□□ -0.32
TCOF1-212ENST00000513538 TTC5Q8N0Z6 440 aa13.05□□□□□ -0.32
TCOF1-212ENST00000513538 TBC1D2BQ9UPU7 963 aa13.05□□□□□ -0.32
TCOF1-212ENST00000513538 C21orf2O43822 256 aa13.04□□□□□ -0.32
TCOF1-212ENST00000513538 CAMTA2O94983 1202 aa13.04□□□□□ -0.32
TCOF1-212ENST00000513538 CCER1Q8TC90 406 aaPredicted RBP13.04□□□□□ -0.32
TCOF1-212ENST00000513538 ZNF219Q9P2Y4 722 aaPredicted RBP13.04□□□□□ -0.32
TCOF1-212ENST00000513538 CEMIPQ8WUJ3 1361 aa13.04□□□□□ -0.32
TCOF1-212ENST00000513538 A0A087WZG4 1122 aa13.03□□□□□ -0.32
TCOF1-212ENST00000513538 GNAT3A8MTJ3 354 aa13.03□□□□□ -0.32
TCOF1-212ENST00000513538 A1BGP04217 495 aa13.03□□□□□ -0.32
TCOF1-212ENST00000513538 IL6STP40189 918 aaPredicted RBP13.03□□□□□ -0.32
TCOF1-212ENST00000513538 ZNF622Q969S3 477 aaKnown RBP eCLIP13.03□□□□□ -0.32
TCOF1-212ENST00000513538 PHACTR3Q96KR7 559 aa13.03□□□□□ -0.32
TCOF1-212ENST00000513538 BRIP1Q9BX63 1249 aa13.03□□□□□ -0.32
TCOF1-212ENST00000513538 ZNF330Q9Y3S2 320 aaPredicted RBP13.03□□□□□ -0.32
TCOF1-212ENST00000513538 NPC1L1Q9UHC9 1359 aa13.03□□□□□ -0.32
TCOF1-212ENST00000513538 U2SURPO15042 1029 aaKnown RBP13.02□□□□□ -0.33
TCOF1-212ENST00000513538 PIP4K2AP48426 406 aaPredicted RBP13.02□□□□□ -0.33
TCOF1-212ENST00000513538 TEFQ10587 303 aa13.02□□□□□ -0.33
TCOF1-212ENST00000513538 CNGB1Q14028 1251 aaPredicted RBP13.02□□□□□ -0.33
TCOF1-212ENST00000513538 GAS2L2Q8NHY3 880 aa13.02□□□□□ -0.33
TCOF1-212ENST00000513538 PRAMEF22A3QJZ6 481 aa13.01□□□□□ -0.33
TCOF1-212ENST00000513538 POTEIP0CG38 1075 aa13.01□□□□□ -0.33
TCOF1-212ENST00000513538 POTEJP0CG39 1038 aa13.01□□□□□ -0.33
TCOF1-212ENST00000513538 LTBP3Q9NS15 1303 aa13□□□□□ -0.33
TCOF1-212ENST00000513538 HSPA1AP0DMV8 641 aaKnown RBP13□□□□□ -0.33
TCOF1-212ENST00000513538 HSPA1BP0DMV9 641 aaKnown RBP13□□□□□ -0.33
TCOF1-212ENST00000513538 PDE6BP35913 854 aa13□□□□□ -0.33
TCOF1-212ENST00000513538 ERFEQ4G0M1 354 aa13□□□□□ -0.33
TCOF1-212ENST00000513538 CNBD1Q8NA66 436 aa13□□□□□ -0.33
TCOF1-212ENST00000513538 FMNL2Q96PY5 1086 aa13□□□□□ -0.33
TCOF1-212ENST00000513538 TEX13AQ9BXU3 409 aaPredicted RBP13□□□□□ -0.33
TCOF1-212ENST00000513538 RSPH6AQ9H0K4 717 aa13□□□□□ -0.33
TCOF1-212ENST00000513538 PCNTO95613 3336 aa13□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms