RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 SSH3Q8TE77 659 aa11.18□□□□□ -0.62
LIMCH1-215ENST00000512632 WDR33Q9C0J8 1336 aaKnown RBP11.18□□□□□ -0.62
LIMCH1-215ENST00000512632 ZNF500O60304 480 aaPredicted RBP11.18□□□□□ -0.62
LIMCH1-215ENST00000512632 SYAP1Q96A49 352 aaPredicted RBP11.18□□□□□ -0.62
LIMCH1-215ENST00000512632 SETD1AO15047 1707 aaKnown RBP11.18□□□□□ -0.62
LIMCH1-215ENST00000512632 ABTB2Q8N961 1025 aa11.17□□□□□ -0.62
LIMCH1-215ENST00000512632 CCDC39Q9UFE4 941 aa11.17□□□□□ -0.62
LIMCH1-215ENST00000512632 C3P01024 1663 aa11.17□□□□□ -0.62
LIMCH1-215ENST00000512632 PI4KAP2A4QPH2 592 aa11.17□□□□□ -0.62
LIMCH1-215ENST00000512632 FIBPO43427 364 aa11.17□□□□□ -0.62
LIMCH1-215ENST00000512632 AK2P54819 239 aa11.17□□□□□ -0.62
LIMCH1-215ENST00000512632 PI4KAP1Q8N8J0 262 aa11.17□□□□□ -0.62
LIMCH1-215ENST00000512632 SNX14Q9Y5W7 946 aa11.17□□□□□ -0.62
LIMCH1-215ENST00000512632 ADAMTS13Q76LX8 1427 aa11.17□□□□□ -0.62
LIMCH1-215ENST00000512632 KCNQ3O43525 872 aa11.17□□□□□ -0.62
LIMCH1-215ENST00000512632 HOXC9P31274 260 aa11.17□□□□□ -0.62
LIMCH1-215ENST00000512632 TTC21AQ8NDW8 1320 aa11.17□□□□□ -0.62
LIMCH1-215ENST00000512632 SGSM2O43147 1006 aa11.17□□□□□ -0.62
LIMCH1-215ENST00000512632 KDRP35968 1356 aa11.17□□□□□ -0.62
LIMCH1-215ENST00000512632 USP25Q9UHP3 1055 aa11.17□□□□□ -0.62
LIMCH1-215ENST00000512632 CEP170BQ9Y4F5 1589 aaPredicted RBP11.17□□□□□ -0.62
LIMCH1-215ENST00000512632 MON2Q7Z3U7 1717 aa11.16□□□□□ -0.62
LIMCH1-215ENST00000512632 PI4K2BQ8TCG2 481 aa11.16□□□□□ -0.62
LIMCH1-215ENST00000512632 LGR6Q9HBX8 967 aa11.16□□□□□ -0.62
LIMCH1-215ENST00000512632 UQCRHLA0A096LP55 91 aa11.16□□□□□ -0.62
LIMCH1-215ENST00000512632 UQCRHP07919 91 aa11.16□□□□□ -0.62
LIMCH1-215ENST00000512632 EID1Q9Y6B2 187 aa11.16□□□□□ -0.62
LIMCH1-215ENST00000512632 PEAK1Q9H792 1746 aa11.16□□□□□ -0.62
LIMCH1-215ENST00000512632 CHPF2Q9P2E5 772 aa11.16□□□□□ -0.62
LIMCH1-215ENST00000512632 HTATSF1O43719 755 aaKnown RBP11.16□□□□□ -0.62
LIMCH1-215ENST00000512632 DNTTIP2Q5QJE6 756 aaKnown RBP11.16□□□□□ -0.62
LIMCH1-215ENST00000512632 AGLP35573 1532 aa11.16□□□□□ -0.62
LIMCH1-215ENST00000512632 HCLS1P14317 486 aaPredicted RBP11.15□□□□□ -0.62
LIMCH1-215ENST00000512632 SYT1P21579 422 aa11.15□□□□□ -0.62
LIMCH1-215ENST00000512632 KIF1BPQ96EK5 621 aa11.15□□□□□ -0.62
LIMCH1-215ENST00000512632 ZMYND15Q9H091 742 aa11.15□□□□□ -0.62
LIMCH1-215ENST00000512632 PDCL3Q9H2J4 239 aa11.15□□□□□ -0.62
LIMCH1-215ENST00000512632 SMC3Q9UQE7 1217 aa11.15□□□□□ -0.62
LIMCH1-215ENST00000512632 RBM33Q96EV2 1170 aaKnown RBP11.15□□□□□ -0.62
LIMCH1-215ENST00000512632 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP11.15□□□□□ -0.62
LIMCH1-215ENST00000512632 RIMS1Q86UR5 1692 aaKnown RBP11.15□□□□□ -0.62
LIMCH1-215ENST00000512632 RUFY3Q7L099 469 aa11.15□□□□□ -0.62
LIMCH1-215ENST00000512632 CNTROBQ8N137 903 aa11.15□□□□□ -0.62
LIMCH1-215ENST00000512632 RAB11FIP3O75154 756 aa11.15□□□□□ -0.63
LIMCH1-215ENST00000512632 LARGE1O95461 756 aa11.15□□□□□ -0.63
LIMCH1-215ENST00000512632 CASTP20810 708 aaKnown RBP11.15□□□□□ -0.63
LIMCH1-215ENST00000512632 CCDC83Q8IWF9 413 aa11.15□□□□□ -0.63
LIMCH1-215ENST00000512632 RAD50Q92878 1312 aa11.14□□□□□ -0.63
LIMCH1-215ENST00000512632 LSG1Q9H089 658 aaKnown RBP11.14□□□□□ -0.63
LIMCH1-215ENST00000512632 PTPRUQ92729 1446 aa11.14□□□□□ -0.63
LIMCH1-215ENST00000512632 STX6O43752 255 aa11.14□□□□□ -0.63
LIMCH1-215ENST00000512632 ZSCAN22P10073 491 aaPredicted RBP11.14□□□□□ -0.63
LIMCH1-215ENST00000512632 DIAPH3Q9NSV4 1193 aa11.14□□□□□ -0.63
LIMCH1-215ENST00000512632 LIMCH1Q9UPQ0 1083 aa11.14□□□□□ -0.63
LIMCH1-215ENST00000512632 MAP3K5Q99683 1374 aa11.14□□□□□ -0.63
LIMCH1-215ENST00000512632 SSH2Q76I76 1423 aa11.14□□□□□ -0.63
LIMCH1-215ENST00000512632 TTC12Q9H892 705 aaPredicted RBP11.14□□□□□ -0.63
LIMCH1-215ENST00000512632 PA2G4Q9UQ80 394 aaKnown RBP11.14□□□□□ -0.63
LIMCH1-215ENST00000512632 CHMP3Q9Y3E7 222 aa11.14□□□□□ -0.63
LIMCH1-215ENST00000512632 PHF14O94880 888 aa11.13□□□□□ -0.63
LIMCH1-215ENST00000512632 C17orf53Q8N3J3 647 aaPredicted RBP11.13□□□□□ -0.63
LIMCH1-215ENST00000512632 DNAAF4Q8WXU2 420 aa11.13□□□□□ -0.63
LIMCH1-215ENST00000512632 NRKQ7Z2Y5 1582 aa11.13□□□□□ -0.63
LIMCH1-215ENST00000512632 PTH1RQ03431 593 aa11.13□□□□□ -0.63
LIMCH1-215ENST00000512632 POLA2Q14181 598 aa11.13□□□□□ -0.63
LIMCH1-215ENST00000512632 ADCK5Q3MIX3 580 aa11.13□□□□□ -0.63
LIMCH1-215ENST00000512632 PRPF40BQ6NWY9 871 aaKnown RBP11.13□□□□□ -0.63
LIMCH1-215ENST00000512632 GIMAP6Q6P9H5 292 aa11.13□□□□□ -0.63
LIMCH1-215ENST00000512632 JAKMIP1Q96N16 626 aaKnown RBP11.13□□□□□ -0.63
LIMCH1-215ENST00000512632 TTC14Q96N46 770 aa11.13□□□□□ -0.63
LIMCH1-215ENST00000512632 ITSN1Q15811 1721 aa11.13□□□□□ -0.63
LIMCH1-215ENST00000512632 SIPA1L2Q9P2F8 1722 aaPredicted RBP11.13□□□□□ -0.63
LIMCH1-215ENST00000512632 VPS37CA5D8V6 355 aaPredicted RBP11.13□□□□□ -0.63
LIMCH1-215ENST00000512632 NECAB1Q8N987 351 aa11.13□□□□□ -0.63
LIMCH1-215ENST00000512632 CSPP1Q1MSJ5 1256 aa11.12□□□□□ -0.63
LIMCH1-215ENST00000512632 RPAP1Q9BWH6 1393 aaPredicted RBP11.12□□□□□ -0.63
LIMCH1-215ENST00000512632 MCM5P33992 734 aa11.12□□□□□ -0.63
LIMCH1-215ENST00000512632 DNM1Q05193 864 aaKnown RBP11.12□□□□□ -0.63
LIMCH1-215ENST00000512632 BEND3Q5T5X7 828 aa11.12□□□□□ -0.63
LIMCH1-215ENST00000512632 MPRIPQ6WCQ1 1025 aa11.12□□□□□ -0.63
LIMCH1-215ENST00000512632 CLASRPQ8N2M8 674 aaKnown RBP11.12□□□□□ -0.63
LIMCH1-215ENST00000512632 JARID2Q92833 1246 aaPredicted RBP11.12□□□□□ -0.63
LIMCH1-215ENST00000512632 AKAP12Q02952 1782 aa11.12□□□□□ -0.63
LIMCH1-215ENST00000512632 ADCY5O95622 1261 aa11.12□□□□□ -0.63
LIMCH1-215ENST00000512632 KCNJ4P48050 445 aa11.12□□□□□ -0.63
LIMCH1-215ENST00000512632 EIF4A1P60842 406 aaKnown RBP11.12□□□□□ -0.63
LIMCH1-215ENST00000512632 CCDC183Q5T5S1 534 aa11.12□□□□□ -0.63
LIMCH1-215ENST00000512632 C9orf78Q9NZ63 289 aaPredicted RBP11.12□□□□□ -0.63
LIMCH1-215ENST00000512632 AOX1Q06278 1338 aa11.12□□□□□ -0.63
LIMCH1-215ENST00000512632 TEFQ10587 303 aa11.12□□□□□ -0.63
LIMCH1-215ENST00000512632 ZSCAN21Q9Y5A6 473 aaPredicted RBP11.12□□□□□ -0.63
LIMCH1-215ENST00000512632 NBPF6Q5VWK0 638 aa11.11□□□□□ -0.63
LIMCH1-215ENST00000512632 NBPF4Q96M43 638 aa11.11□□□□□ -0.63
LIMCH1-215ENST00000512632 TCEANC2Q96MN5 208 aa11.11□□□□□ -0.63
LIMCH1-215ENST00000512632 F13A1P00488 732 aa11.11□□□□□ -0.63
LIMCH1-215ENST00000512632 GJB2P29033 226 aa11.11□□□□□ -0.63
LIMCH1-215ENST00000512632 KIAA2012Q0VF49 1180 aa11.11□□□□□ -0.63
LIMCH1-215ENST00000512632 FERMT3Q86UX7 667 aa11.11□□□□□ -0.63
LIMCH1-215ENST00000512632 TSC1Q92574 1164 aa11.11□□□□□ -0.63
LIMCH1-215ENST00000512632 GLRX3O76003 335 aaKnown RBP11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms