RNA–Protein interactions for RNA: ENST00000512293.1

PDLIM3-207, Transcript of PDZ and LIM domain 3, humanhuman

TSL 3

Gene PDLIM3, Length 581 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-207ENST00000512293 AFDNP55196 1824 aaKnown RBP23.75■■□□□ 1.39
PDLIM3-207ENST00000512293 UBR2Q8IWV8 1755 aa23.75■■□□□ 1.39
PDLIM3-207ENST00000512293 CHRNA5P30532 468 aa23.74■■□□□ 1.39
PDLIM3-207ENST00000512293 KDM2BQ8NHM5 1336 aa23.74■■□□□ 1.39
PDLIM3-207ENST00000512293 DLEC1Q9Y238 1755 aa23.73■■□□□ 1.39
PDLIM3-207ENST00000512293 ZC3H4Q9UPT8 1303 aaKnown RBP23.73■■□□□ 1.39
PDLIM3-207ENST00000512293 COL15A1P39059 1388 aa23.73■■□□□ 1.39
PDLIM3-207ENST00000512293 TNRC6CQ9HCJ0 1690 aaKnown RBP23.73■■□□□ 1.39
PDLIM3-207ENST00000512293 PER1O15534 1290 aaPredicted RBP23.72■■□□□ 1.39
PDLIM3-207ENST00000512293 FSTL1Q12841 308 aa23.72■■□□□ 1.39
PDLIM3-207ENST00000512293 SLC39A6Q13433 755 aa23.72■■□□□ 1.39
PDLIM3-207ENST00000512293 MTHFSDQ2M296 383 aaKnown RBP23.72■■□□□ 1.39
PDLIM3-207ENST00000512293 RNF181Q9P0P0 153 aa23.72■■□□□ 1.39
PDLIM3-207ENST00000512293 KIF7Q2M1P5 1343 aa23.72■■□□□ 1.39
PDLIM3-207ENST00000512293 WDR90Q96KV7 1748 aa23.72■■□□□ 1.39
PDLIM3-207ENST00000512293 DIAPH1O60610 1272 aaKnown RBP23.71■■□□□ 1.39
PDLIM3-207ENST00000512293 HMOX1P09601 288 aa23.71■■□□□ 1.39
PDLIM3-207ENST00000512293 NFIXQ14938 502 aa23.71■■□□□ 1.39
PDLIM3-207ENST00000512293 C16orf71Q8IYS4 520 aaPredicted RBP23.7■■□□□ 1.38
PDLIM3-207ENST00000512293 ZBTB1Q9Y2K1 713 aa23.7■■□□□ 1.38
PDLIM3-207ENST00000512293 BCL2L12Q9HB09 334 aa23.69■■□□□ 1.38
PDLIM3-207ENST00000512293 CCER1Q8TC90 406 aaPredicted RBP23.68■■□□□ 1.38
PDLIM3-207ENST00000512293 NPC1L1Q9UHC9 1359 aa23.66■■□□□ 1.38
PDLIM3-207ENST00000512293 SERPINB2P05120 415 aa23.66■■□□□ 1.38
PDLIM3-207ENST00000512293 STARD3NLO95772 234 aa23.65■■□□□ 1.38
PDLIM3-207ENST00000512293 EIF5P55010 431 aaKnown RBP23.65■■□□□ 1.38
PDLIM3-207ENST00000512293 COL3A1P02461 1466 aaPredicted RBP23.64■■□□□ 1.38
PDLIM3-207ENST00000512293 A0A087WZG4 1122 aa23.64■■□□□ 1.37
PDLIM3-207ENST00000512293 TTLL6Q8N841 843 aa23.64■■□□□ 1.37
PDLIM3-207ENST00000512293 SIPA1L3O60292 1781 aaPredicted RBP23.64■■□□□ 1.37
PDLIM3-207ENST00000512293 LMNB1P20700 586 aa23.63■■□□□ 1.37
PDLIM3-207ENST00000512293 TTC5Q8N0Z6 440 aa23.63■■□□□ 1.37
PDLIM3-207ENST00000512293 TEX13AQ9BXU3 409 aaPredicted RBP23.63■■□□□ 1.37
PDLIM3-207ENST00000512293 RRAGCQ9HB90 399 aa23.63■■□□□ 1.37
PDLIM3-207ENST00000512293 PDZRN3Q9UPQ7 1066 aa23.62■■□□□ 1.37
PDLIM3-207ENST00000512293 CANXP27824 592 aaKnown RBP23.61■■□□□ 1.37
PDLIM3-207ENST00000512293 CC2D1BQ5T0F9 858 aaKnown RBP23.61■■□□□ 1.37
PDLIM3-207ENST00000512293 JMYQ8N9B5 988 aa23.61■■□□□ 1.37
PDLIM3-207ENST00000512293 GAS2L2Q8NHY3 880 aa23.61■■□□□ 1.37
PDLIM3-207ENST00000512293 KLRG1Q96E93 195 aa23.61■■□□□ 1.37
PDLIM3-207ENST00000512293 SCN7AQ01118 1682 aa23.6■■□□□ 1.37
PDLIM3-207ENST00000512293 GLTPD2A6NH11 291 aa23.6■■□□□ 1.37
PDLIM3-207ENST00000512293 H0YIN7 160 aa23.6■■□□□ 1.37
PDLIM3-207ENST00000512293 RASSF7Q02833 373 aa23.6■■□□□ 1.37
PDLIM3-207ENST00000512293 ZNF790Q6PG37 636 aa23.6■■□□□ 1.37
PDLIM3-207ENST00000512293 C2CD5Q86YS7 1000 aa23.6■■□□□ 1.37
PDLIM3-207ENST00000512293 SMC1BQ8NDV3 1235 aa23.6■■□□□ 1.37
PDLIM3-207ENST00000512293 HEG1Q9ULI3 1381 aa23.6■■□□□ 1.37
PDLIM3-207ENST00000512293 CCDC88AQ3V6T2 1871 aa23.6■■□□□ 1.37
PDLIM3-207ENST00000512293 PCNTO95613 3336 aa23.59■■□□□ 1.37
PDLIM3-207ENST00000512293 GNAT3A8MTJ3 354 aa23.59■■□□□ 1.37
PDLIM3-207ENST00000512293 IL17REQ8NFR9 667 aa23.59■■□□□ 1.37
PDLIM3-207ENST00000512293 ZNF496Q96IT1 587 aaPredicted RBP23.59■■□□□ 1.37
PDLIM3-207ENST00000512293 ANKRD31Q8N7Z5 1873 aa23.58■■□□□ 1.37
PDLIM3-207ENST00000512293 CARMIL3Q8ND23 1372 aa23.58■■□□□ 1.37
PDLIM3-207ENST00000512293 PRELPP51888 382 aa23.58■■□□□ 1.37
PDLIM3-207ENST00000512293 TEFQ10587 303 aa23.58■■□□□ 1.37
PDLIM3-207ENST00000512293 TIAM2Q8IVF5 1701 aa23.58■■□□□ 1.37
PDLIM3-207ENST00000512293 VEGFAP15692 232 aaPredicted RBP23.57■■□□□ 1.36
PDLIM3-207ENST00000512293 IL6STP40189 918 aaPredicted RBP23.57■■□□□ 1.36
PDLIM3-207ENST00000512293 BRIP1Q9BX63 1249 aa23.57■■□□□ 1.36
PDLIM3-207ENST00000512293 CEMIPQ8WUJ3 1361 aa23.56■■□□□ 1.36
PDLIM3-207ENST00000512293 NFKBIEO00221 500 aa23.55■■□□□ 1.36
PDLIM3-207ENST00000512293 PDE6BP35913 854 aa23.55■■□□□ 1.36
PDLIM3-207ENST00000512293 TBC1D9BQ66K14 1250 aa23.55■■□□□ 1.36
PDLIM3-207ENST00000512293 DICER1Q9UPY3 1922 aaKnown RBP23.55■■□□□ 1.36
PDLIM3-207ENST00000512293 FER1L6Q2WGJ9 1857 aa23.54■■□□□ 1.36
PDLIM3-207ENST00000512293 FMNL2Q96PY5 1086 aa23.54■■□□□ 1.36
PDLIM3-207ENST00000512293 U2SURPO15042 1029 aaKnown RBP23.53■■□□□ 1.36
PDLIM3-207ENST00000512293 HTRA3P83110 453 aa23.53■■□□□ 1.36
PDLIM3-207ENST00000512293 BICDL1Q6ZP65 573 aa23.53■■□□□ 1.36
PDLIM3-207ENST00000512293 PRR5LQ6MZQ0 368 aa23.52■■□□□ 1.36
PDLIM3-207ENST00000512293 COL11A2P13942 1736 aaPredicted RBP23.52■■□□□ 1.36
PDLIM3-207ENST00000512293 BCORQ6W2J9 1755 aa23.5■■□□□ 1.35
PDLIM3-207ENST00000512293 TBC1D2BQ9UPU7 963 aa23.5■■□□□ 1.35
PDLIM3-207ENST00000512293 LTBP3Q9NS15 1303 aa23.5■■□□□ 1.35
PDLIM3-207ENST00000512293 CAMTA2O94983 1202 aa23.49■■□□□ 1.35
PDLIM3-207ENST00000512293 DPY19L2Q6NUT2 758 aa23.49■■□□□ 1.35
PDLIM3-207ENST00000512293 ZNF622Q969S3 477 aaKnown RBP eCLIP23.49■■□□□ 1.35
PDLIM3-207ENST00000512293 ARFGEF2Q9Y6D5 1785 aa23.48■■□□□ 1.35
PDLIM3-207ENST00000512293 NPM2Q86SE8 214 aaKnown RBP23.48■■□□□ 1.35
PDLIM3-207ENST00000512293 SETDB2Q96T68 719 aa23.48■■□□□ 1.35
PDLIM3-207ENST00000512293 BTBD11A6QL63 1104 aa23.47■■□□□ 1.35
PDLIM3-207ENST00000512293 POTECB2RU33 542 aa23.47■■□□□ 1.35
PDLIM3-207ENST00000512293 A1BGP04217 495 aa23.47■■□□□ 1.35
PDLIM3-207ENST00000512293 CNKSR1Q969H4 720 aa23.47■■□□□ 1.35
PDLIM3-207ENST00000512293 RSPH6AQ9H0K4 717 aa23.47■■□□□ 1.35
PDLIM3-207ENST00000512293 C21orf2O43822 256 aa23.46■■□□□ 1.35
PDLIM3-207ENST00000512293 STYK1Q6J9G0 422 aa23.46■■□□□ 1.35
PDLIM3-207ENST00000512293 CNBD1Q8NA66 436 aa23.46■■□□□ 1.35
PDLIM3-207ENST00000512293 PHACTR3Q96KR7 559 aa23.46■■□□□ 1.35
PDLIM3-207ENST00000512293 RGL2O15211 777 aa23.45■■□□□ 1.34
PDLIM3-207ENST00000512293 SRGNP10124 158 aa23.45■■□□□ 1.34
PDLIM3-207ENST00000512293 PRKAR2BP31323 418 aa23.45■■□□□ 1.34
PDLIM3-207ENST00000512293 SOGA3Q5TF21 947 aa23.45■■□□□ 1.34
PDLIM3-207ENST00000512293 CLEC4GQ6UXB4 293 aa23.45■■□□□ 1.34
PDLIM3-207ENST00000512293 CFAP53Q96M91 514 aa23.45■■□□□ 1.34
PDLIM3-207ENST00000512293 ZNF330Q9Y3S2 320 aaPredicted RBP23.45■■□□□ 1.34
PDLIM3-207ENST00000512293 ST5P78524 1137 aa23.44■■□□□ 1.34
PDLIM3-207ENST00000512293 ERFEQ4G0M1 354 aa23.44■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms