RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 DNAJC25Q9H1X3 360 aa14.17□□□□□ -0.14
LIMCH1-213ENST00000511496 TBC1D8O95759 1140 aa14.16□□□□□ -0.14
LIMCH1-213ENST00000511496 CT47B1P0C2W7 299 aaPredicted RBP14.16□□□□□ -0.14
LIMCH1-213ENST00000511496 SWT1Q5T5J6 900 aaKnown RBP14.16□□□□□ -0.14
LIMCH1-213ENST00000511496 TNMDQ9H2S6 317 aa14.16□□□□□ -0.14
LIMCH1-213ENST00000511496 TULP1O00294 542 aaPredicted RBP14.16□□□□□ -0.14
LIMCH1-213ENST00000511496 SCP2P22307 547 aa14.16□□□□□ -0.14
LIMCH1-213ENST00000511496 MTHFSP49914 203 aa14.16□□□□□ -0.14
LIMCH1-213ENST00000511496 SUGP1Q8IWZ8 645 aaKnown RBP14.16□□□□□ -0.14
LIMCH1-213ENST00000511496 HOMEZQ8IX15 550 aa14.16□□□□□ -0.14
LIMCH1-213ENST00000511496 ANO2Q9NQ90 1003 aa14.16□□□□□ -0.14
LIMCH1-213ENST00000511496 GOLGA6L19H0YKK7 550 aa14.15□□□□□ -0.14
LIMCH1-213ENST00000511496 ELL2O00472 640 aaPredicted RBP14.15□□□□□ -0.14
LIMCH1-213ENST00000511496 STX6O43752 255 aa14.15□□□□□ -0.14
LIMCH1-213ENST00000511496 ARHGAP30Q7Z6I6 1101 aaPredicted RBP14.15□□□□□ -0.14
LIMCH1-213ENST00000511496 CALR3Q96L12 384 aaKnown RBP14.15□□□□□ -0.14
LIMCH1-213ENST00000511496 TRPM1Q7Z4N2 1603 aa14.15□□□□□ -0.14
LIMCH1-213ENST00000511496 URI1O94763 535 aaPredicted RBP14.15□□□□□ -0.14
LIMCH1-213ENST00000511496 SYT1P21579 422 aa14.15□□□□□ -0.14
LIMCH1-213ENST00000511496 C14orf37Q86TY3 774 aa14.15□□□□□ -0.14
LIMCH1-213ENST00000511496 ATAD2Q6PL18 1390 aa14.15□□□□□ -0.14
LIMCH1-213ENST00000511496 LIG1P18858 919 aa14.14□□□□□ -0.15
LIMCH1-213ENST00000511496 MCCP23508 829 aa14.14□□□□□ -0.15
LIMCH1-213ENST00000511496 CARD6Q9BX69 1037 aa14.14□□□□□ -0.15
LIMCH1-213ENST00000511496 DNAI1Q9UI46 699 aa14.14□□□□□ -0.15
LIMCH1-213ENST00000511496 CORO7P57737 925 aa14.14□□□□□ -0.15
LIMCH1-213ENST00000511496 ZRSR1Q15695 479 aaKnown RBP14.14□□□□□ -0.15
LIMCH1-213ENST00000511496 CEP89Q96ST8 783 aa14.14□□□□□ -0.15
LIMCH1-213ENST00000511496 GOLGA6L4A6NEF3 574 aa14.13□□□□□ -0.15
LIMCH1-213ENST00000511496 F13A1P00488 732 aa14.13□□□□□ -0.15
LIMCH1-213ENST00000511496 L2HGDHQ9H9P8 463 aa14.13□□□□□ -0.15
LIMCH1-213ENST00000511496 ATP6V1DQ9Y5K8 247 aa14.13□□□□□ -0.15
LIMCH1-213ENST00000511496 VPS37CA5D8V6 355 aaPredicted RBP14.13□□□□□ -0.15
LIMCH1-213ENST00000511496 ARFGAP3Q9NP61 516 aa14.13□□□□□ -0.15
LIMCH1-213ENST00000511496 POLR3AO14802 1390 aaPredicted RBP14.13□□□□□ -0.15
LIMCH1-213ENST00000511496 H3BQF6 201 aa14.13□□□□□ -0.15
LIMCH1-213ENST00000511496 ZBTB12Q9Y330 459 aaPredicted RBP14.13□□□□□ -0.15
LIMCH1-213ENST00000511496 POLA1P09884 1462 aaPredicted RBP14.13□□□□□ -0.15
LIMCH1-213ENST00000511496 RPAP1Q9BWH6 1393 aaPredicted RBP14.13□□□□□ -0.15
LIMCH1-213ENST00000511496 CCDC196A0A1B0GTZ2 297 aa14.12□□□□□ -0.15
LIMCH1-213ENST00000511496 EVCP57679 992 aa14.12□□□□□ -0.15
LIMCH1-213ENST00000511496 MCM6Q14566 821 aa14.12□□□□□ -0.15
LIMCH1-213ENST00000511496 NBPF20Q3BBV1 942 aa14.12□□□□□ -0.15
LIMCH1-213ENST00000511496 CC2D1AQ6P1N0 951 aaPredicted RBP14.12□□□□□ -0.15
LIMCH1-213ENST00000511496 IQUBQ8NA54 791 aa14.12□□□□□ -0.15
LIMCH1-213ENST00000511496 ZSCAN16Q9H4T2 348 aaPredicted RBP14.12□□□□□ -0.15
LIMCH1-213ENST00000511496 SLC24A3Q9HC58 644 aa14.12□□□□□ -0.15
LIMCH1-213ENST00000511496 DACT1Q9NYF0 836 aa14.12□□□□□ -0.15
LIMCH1-213ENST00000511496 SH3BP1Q9Y3L3 701 aa14.12□□□□□ -0.15
LIMCH1-213ENST00000511496 ELP1O95163 1332 aa14.12□□□□□ -0.15
LIMCH1-213ENST00000511496 IBSPP21815 317 aaPredicted RBP14.12□□□□□ -0.15
LIMCH1-213ENST00000511496 CFAP53Q96M91 514 aa14.12□□□□□ -0.15
LIMCH1-213ENST00000511496 UBXN6Q9BZV1 441 aa14.12□□□□□ -0.15
LIMCH1-213ENST00000511496 PLB1Q6P1J6 1458 aa14.12□□□□□ -0.15
LIMCH1-213ENST00000511496 PPP1R12AO14974 1030 aaPredicted RBP14.12□□□□□ -0.15
LIMCH1-213ENST00000511496 NEMFO60524 1076 aa14.12□□□□□ -0.15
LIMCH1-213ENST00000511496 CCZ1BP86790 482 aa14.12□□□□□ -0.15
LIMCH1-213ENST00000511496 CCZ1P86791 482 aaPredicted RBP14.12□□□□□ -0.15
LIMCH1-213ENST00000511496 FAM177A1Q8N128 213 aaPredicted RBP14.12□□□□□ -0.15
LIMCH1-213ENST00000511496 RAI14Q9P0K7 980 aa14.12□□□□□ -0.15
LIMCH1-213ENST00000511496 SMC3Q9UQE7 1217 aa14.12□□□□□ -0.15
LIMCH1-213ENST00000511496 RAD54L2Q9Y4B4 1467 aa14.11□□□□□ -0.15
LIMCH1-213ENST00000511496 PHACTR2O75167 634 aa14.11□□□□□ -0.15
LIMCH1-213ENST00000511496 PLEKHO1Q53GL0 409 aaPredicted RBP14.11□□□□□ -0.15
LIMCH1-213ENST00000511496 ISM2Q6H9L7 571 aa14.11□□□□□ -0.15
LIMCH1-213ENST00000511496 ECM2O94769 699 aaPredicted RBP14.11□□□□□ -0.15
LIMCH1-213ENST00000511496 TTC19Q6DKK2 380 aaPredicted RBP14.11□□□□□ -0.15
LIMCH1-213ENST00000511496 FAM173BQ6P4H8 233 aa14.11□□□□□ -0.15
LIMCH1-213ENST00000511496 GIMAP7Q8NHV1 300 aa14.11□□□□□ -0.15
LIMCH1-213ENST00000511496 PSD3Q9NYI0 1048 aa14.11□□□□□ -0.15
LIMCH1-213ENST00000511496 TPM1P09493 284 aa14.11□□□□□ -0.15
LIMCH1-213ENST00000511496 LIG3P49916 1009 aa14.11□□□□□ -0.15
LIMCH1-213ENST00000511496 TSHZ3Q63HK5 1081 aa14.11□□□□□ -0.15
LIMCH1-213ENST00000511496 TADA2BQ86TJ2 420 aa14.11□□□□□ -0.15
LIMCH1-213ENST00000511496 KANK1Q14678 1352 aa14.1□□□□□ -0.15
LIMCH1-213ENST00000511496 PRDM15P57071 1507 aaPredicted RBP14.1□□□□□ -0.15
LIMCH1-213ENST00000511496 NEBLO76041 1014 aa14.1□□□□□ -0.15
LIMCH1-213ENST00000511496 TSPY4P0CV99 314 aa14.1□□□□□ -0.15
LIMCH1-213ENST00000511496 TSPY10P0CW01 314 aa14.1□□□□□ -0.15
LIMCH1-213ENST00000511496 CCDC93Q567U6 631 aa14.1□□□□□ -0.15
LIMCH1-213ENST00000511496 FERMT3Q86UX7 667 aa14.1□□□□□ -0.15
LIMCH1-213ENST00000511496 TDRD7Q8NHU6 1098 aaKnown RBP14.1□□□□□ -0.15
LIMCH1-213ENST00000511496 FBXW7Q969H0 707 aa14.1□□□□□ -0.15
LIMCH1-213ENST00000511496 ATP8B1O43520 1251 aa14.1□□□□□ -0.15
LIMCH1-213ENST00000511496 DHX8Q14562 1220 aaKnown RBP14.1□□□□□ -0.15
LIMCH1-213ENST00000511496 CCDC30Q5VVM6 783 aa14.1□□□□□ -0.15
LIMCH1-213ENST00000511496 CEP170Q5SW79 1584 aa14.09□□□□□ -0.15
LIMCH1-213ENST00000511496 SMC2O95347 1197 aa14.09□□□□□ -0.15
LIMCH1-213ENST00000511496 PPP1R13BQ96KQ4 1090 aa14.09□□□□□ -0.15
LIMCH1-213ENST00000511496 PDE11AQ9HCR9 933 aa14.09□□□□□ -0.15
LIMCH1-213ENST00000511496 A2MP01023 1474 aa14.09□□□□□ -0.15
LIMCH1-213ENST00000511496 BECN2A8MW95 431 aa14.09□□□□□ -0.15
LIMCH1-213ENST00000511496 JPH2Q9BR39 696 aaPredicted RBP14.09□□□□□ -0.15
LIMCH1-213ENST00000511496 SRRTQ9BXP5 876 aaKnown RBP14.09□□□□□ -0.15
LIMCH1-213ENST00000511496 H0YHG0 523 aa14.09□□□□□ -0.15
LIMCH1-213ENST00000511496 SARNPP82979 210 aaKnown RBP14.09□□□□□ -0.15
LIMCH1-213ENST00000511496 FBXW10Q5XX13 1052 aa14.09□□□□□ -0.15
LIMCH1-213ENST00000511496 EFCAB13Q8IY85 973 aa14.09□□□□□ -0.15
LIMCH1-213ENST00000511496 E4F1Q66K89 784 aaPredicted RBP14.08□□□□□ -0.16
LIMCH1-213ENST00000511496 ERLIN2O94905 339 aa14.08□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms