RNA–Protein interactions for RNA: ENST00000508171.5

LIN54-207, Transcript of lin-54 DREAM MuvB core complex component, humanhuman

TSL 1 (best)

Gene LIN54, Length 2,684 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIN54-207ENST00000508171 KCNH5Q8NCM2 988 aa13.35□□□□□ -0.27
LIN54-207ENST00000508171 GCP02774 474 aa13.34□□□□□ -0.27
LIN54-207ENST00000508171 POLA2Q14181 598 aa13.34□□□□□ -0.27
LIN54-207ENST00000508171 DNAAF4Q8WXU2 420 aa13.34□□□□□ -0.27
LIN54-207ENST00000508171 TMX3Q96JJ7 454 aa13.34□□□□□ -0.27
LIN54-207ENST00000508171 KLHL40Q2TBA0 621 aa13.34□□□□□ -0.27
LIN54-207ENST00000508171 NOL8Q76FK4 1167 aaKnown RBP13.34□□□□□ -0.27
LIN54-207ENST00000508171 RHPN1Q8TCX5 695 aa13.34□□□□□ -0.27
LIN54-207ENST00000508171 KDM3BQ7LBC6 1761 aa13.33□□□□□ -0.28
LIN54-207ENST00000508171 AKAP4Q5JQC9 854 aa13.33□□□□□ -0.28
LIN54-207ENST00000508171 FOXD4L5Q5VV16 416 aaPredicted RBP13.33□□□□□ -0.28
LIN54-207ENST00000508171 FOXD4L4Q8WXT5 416 aaPredicted RBP13.33□□□□□ -0.28
LIN54-207ENST00000508171 LMBRD1Q9NUN5 540 aa13.33□□□□□ -0.28
LIN54-207ENST00000508171 PRAMEF22A3QJZ6 481 aa13.33□□□□□ -0.28
LIN54-207ENST00000508171 PLEKHO1Q53GL0 409 aaPredicted RBP13.33□□□□□ -0.28
LIN54-207ENST00000508171 ISY1Q9ULR0 285 aaKnown RBP13.33□□□□□ -0.28
LIN54-207ENST00000508171 MED1Q15648 1581 aaPredicted RBP13.32□□□□□ -0.28
LIN54-207ENST00000508171 NCLP19338 710 aaKnown RBP13.32□□□□□ -0.28
LIN54-207ENST00000508171 RAB11FIP3O75154 756 aa13.32□□□□□ -0.28
LIN54-207ENST00000508171 PROSER3Q2NL68 480 aa13.32□□□□□ -0.28
LIN54-207ENST00000508171 ARHGEF25Q86VW2 580 aa13.32□□□□□ -0.28
LIN54-207ENST00000508171 PI4K2BQ8TCG2 481 aa13.32□□□□□ -0.28
LIN54-207ENST00000508171 UPF3BQ9BZI7 483 aaKnown RBP13.32□□□□□ -0.28
LIN54-207ENST00000508171 AXIN2Q9Y2T1 843 aa13.32□□□□□ -0.28
LIN54-207ENST00000508171 ADCY9O60503 1353 aa13.32□□□□□ -0.28
LIN54-207ENST00000508171 ADGRL3Q9HAR2 1447 aa13.31□□□□□ -0.28
LIN54-207ENST00000508171 RNMTO43148 476 aaKnown RBP13.31□□□□□ -0.28
LIN54-207ENST00000508171 PRPF40AO75400 957 aaKnown RBP13.31□□□□□ -0.28
LIN54-207ENST00000508171 HOXB7P09629 217 aa13.31□□□□□ -0.28
LIN54-207ENST00000508171 PXDNQ92626 1479 aa13.31□□□□□ -0.28
LIN54-207ENST00000508171 MCCP23508 829 aa13.31□□□□□ -0.28
LIN54-207ENST00000508171 LMO7Q8WWI1 1683 aa13.3□□□□□ -0.28
LIN54-207ENST00000508171 CAVIN1Q6NZI2 390 aaKnown RBP13.3□□□□□ -0.28
LIN54-207ENST00000508171 C1orf141Q5JVX7 400 aa13.3□□□□□ -0.28
LIN54-207ENST00000508171 ANKRD24Q8TF21 1146 aa13.3□□□□□ -0.28
LIN54-207ENST00000508171 KIF1BPQ96EK5 621 aa13.3□□□□□ -0.28
LIN54-207ENST00000508171 MAP3K2Q9Y2U5 619 aa13.3□□□□□ -0.28
LIN54-207ENST00000508171 GIGYF1O75420 1035 aaPredicted RBP13.29□□□□□ -0.28
LIN54-207ENST00000508171 ANAPC15P60006 121 aa13.29□□□□□ -0.28
LIN54-207ENST00000508171 DBF4Q9UBU7 674 aaPredicted RBP13.29□□□□□ -0.28
LIN54-207ENST00000508171 AOX1Q06278 1338 aa13.29□□□□□ -0.28
LIN54-207ENST00000508171 AMOTQ4VCS5 1084 aa13.29□□□□□ -0.28
LIN54-207ENST00000508171 CWF19L2Q2TBE0 894 aaKnown RBP13.28□□□□□ -0.28
LIN54-207ENST00000508171 GPT2Q8TD30 523 aa13.28□□□□□ -0.28
LIN54-207ENST00000508171 CUL4AQ13619 759 aa13.28□□□□□ -0.28
LIN54-207ENST00000508171 HSPA4P34932 840 aa13.27□□□□□ -0.28
LIN54-207ENST00000508171 MCM2P49736 904 aa13.27□□□□□ -0.28
LIN54-207ENST00000508171 C9orf78Q9NZ63 289 aaPredicted RBP13.27□□□□□ -0.28
LIN54-207ENST00000508171 RGPD5Q99666 1765 aa13.27□□□□□ -0.28
LIN54-207ENST00000508171 PHRF1Q9P1Y6 1649 aaKnown RBP13.27□□□□□ -0.28
LIN54-207ENST00000508171 OS9Q13438 667 aaPredicted RBP13.27□□□□□ -0.29
LIN54-207ENST00000508171 ZSCAN23Q3MJ62 389 aa13.27□□□□□ -0.29
LIN54-207ENST00000508171 RBM27Q9P2N5 1060 aaKnown RBP13.27□□□□□ -0.29
LIN54-207ENST00000508171 NSFL1CQ9UNZ2 370 aaKnown RBP13.27□□□□□ -0.29
LIN54-207ENST00000508171 PA2G4Q9UQ80 394 aaKnown RBP13.27□□□□□ -0.29
LIN54-207ENST00000508171 CWC27Q6UX04 472 aaKnown RBP13.26□□□□□ -0.29
LIN54-207ENST00000508171 SGSM2O43147 1006 aa13.26□□□□□ -0.29
LIN54-207ENST00000508171 ZC3H6P61129 1189 aaKnown RBP13.26□□□□□ -0.29
LIN54-207ENST00000508171 KRT28Q7Z3Y7 464 aa13.26□□□□□ -0.29
LIN54-207ENST00000508171 CHMP4AQ9BY43 222 aa13.26□□□□□ -0.29
LIN54-207ENST00000508171 ERBB4Q15303 1308 aa13.26□□□□□ -0.29
LIN54-207ENST00000508171 AIMP1Q12904 312 aaKnown RBP13.26□□□□□ -0.29
LIN54-207ENST00000508171 KSR2Q6VAB6 950 aa13.26□□□□□ -0.29
LIN54-207ENST00000508171 IL17RAQ96F46 866 aa13.26□□□□□ -0.29
LIN54-207ENST00000508171 LARP6Q9BRS8 491 aaKnown RBP13.26□□□□□ -0.29
LIN54-207ENST00000508171 SPG7Q9UQ90 795 aa13.26□□□□□ -0.29
LIN54-207ENST00000508171 BRD1O95696 1058 aa13.25□□□□□ -0.29
LIN54-207ENST00000508171 NASPP49321 788 aaPredicted RBP13.25□□□□□ -0.29
LIN54-207ENST00000508171 RASEFQ8IZ41 740 aa13.25□□□□□ -0.29
LIN54-207ENST00000508171 CNTROBQ8N137 903 aa13.25□□□□□ -0.29
LIN54-207ENST00000508171 HEG1Q9ULI3 1381 aa13.25□□□□□ -0.29
LIN54-207ENST00000508171 ZNF445P59923 1031 aa13.25□□□□□ -0.29
LIN54-207ENST00000508171 SLC39A6Q13433 755 aa13.25□□□□□ -0.29
LIN54-207ENST00000508171 FOXD4L6Q3SYB3 417 aaPredicted RBP13.25□□□□□ -0.29
LIN54-207ENST00000508171 FOXD4L3Q6VB84 417 aaPredicted RBP13.25□□□□□ -0.29
LIN54-207ENST00000508171 LSG1Q9H089 658 aaKnown RBP13.25□□□□□ -0.29
LIN54-207ENST00000508171 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP13.25□□□□□ -0.29
LIN54-207ENST00000508171 TCHHQ07283 1943 aa13.24□□□□□ -0.29
LIN54-207ENST00000508171 MTX1Q13505 466 aa13.24□□□□□ -0.29
LIN54-207ENST00000508171 HSP90AB4PQ58FF6 505 aa13.24□□□□□ -0.29
LIN54-207ENST00000508171 INTS4Q96HW7 963 aaKnown RBP13.24□□□□□ -0.29
LIN54-207ENST00000508171 SNX14Q9Y5W7 946 aa13.24□□□□□ -0.29
LIN54-207ENST00000508171 ZNF142P52746 1687 aaPredicted RBP13.24□□□□□ -0.29
LIN54-207ENST00000508171 NPHP4O75161 1426 aaPredicted RBP13.24□□□□□ -0.29
LIN54-207ENST00000508171 RAD50Q92878 1312 aa13.24□□□□□ -0.29
LIN54-207ENST00000508171 SLIT3O75094 1523 aa13.23□□□□□ -0.29
LIN54-207ENST00000508171 NCAPD2Q15021 1401 aa13.23□□□□□ -0.29
LIN54-207ENST00000508171 ESPNB1AK53 854 aa13.23□□□□□ -0.29
LIN54-207ENST00000508171 ALDH1L1O75891 902 aa13.23□□□□□ -0.29
LIN54-207ENST00000508171 CLCN1P35523 988 aa13.23□□□□□ -0.29
LIN54-207ENST00000508171 PRIM1P49642 420 aaKnown RBP13.23□□□□□ -0.29
LIN54-207ENST00000508171 PROSER2Q86WR7 435 aaPredicted RBP13.23□□□□□ -0.29
LIN54-207ENST00000508171 CLASRPQ8N2M8 674 aaKnown RBP13.23□□□□□ -0.29
LIN54-207ENST00000508171 TRIM44Q96DX7 344 aaPredicted RBP13.23□□□□□ -0.29
LIN54-207ENST00000508171 KAZALD1Q96I82 304 aa13.23□□□□□ -0.29
LIN54-207ENST00000508171 TMEM63CQ9P1W3 806 aa13.23□□□□□ -0.29
LIN54-207ENST00000508171 PDIA6Q15084 440 aa13.23□□□□□ -0.29
LIN54-207ENST00000508171 GLRX3O76003 335 aaKnown RBP13.22□□□□□ -0.29
LIN54-207ENST00000508171 CPA1P15085 419 aa13.22□□□□□ -0.29
LIN54-207ENST00000508171 DDX17Q92841 729 aaKnown RBP13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms