RNA–Protein interactions for RNA: ENST00000506042.5

SQSTM1-210, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 921 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-210ENST00000506042 CC2D1BQ5T0F9 858 aaKnown RBP28.31■■■□□ 2.12
SQSTM1-210ENST00000506042 GAS2L2Q8NHY3 880 aa28.31■■■□□ 2.12
SQSTM1-210ENST00000506042 LGR6Q9HBX8 967 aa28.31■■■□□ 2.12
SQSTM1-210ENST00000506042 DDR1Q08345 913 aa28.3■■■□□ 2.12
SQSTM1-210ENST00000506042 IFFO2Q5TF58 517 aa28.3■■■□□ 2.12
SQSTM1-210ENST00000506042 ZC3H4Q9UPT8 1303 aaKnown RBP28.29■■■□□ 2.12
SQSTM1-210ENST00000506042 KCNA3P22001 575 aa28.29■■■□□ 2.12
SQSTM1-210ENST00000506042 TM4SF1P30408 202 aa28.29■■■□□ 2.12
SQSTM1-210ENST00000506042 RNF181Q9P0P0 153 aa28.29■■■□□ 2.12
SQSTM1-210ENST00000506042 U2SURPO15042 1029 aaKnown RBP28.28■■■□□ 2.12
SQSTM1-210ENST00000506042 MTHFSDQ2M296 383 aaKnown RBP28.28■■■□□ 2.12
SQSTM1-210ENST00000506042 RBM46Q8TBY0 533 aaKnown RBP28.28■■■□□ 2.12
SQSTM1-210ENST00000506042 CFAP53Q96M91 514 aa28.28■■■□□ 2.12
SQSTM1-210ENST00000506042 PDZRN3Q9UPQ7 1066 aa28.28■■■□□ 2.12
SQSTM1-210ENST00000506042 NPC1L1Q9UHC9 1359 aa28.27■■■□□ 2.12
SQSTM1-210ENST00000506042 SLC39A6Q13433 755 aa28.27■■■□□ 2.12
SQSTM1-210ENST00000506042 GNAT3A8MTJ3 354 aa28.25■■■□□ 2.11
SQSTM1-210ENST00000506042 FSTL1Q12841 308 aa28.25■■■□□ 2.11
SQSTM1-210ENST00000506042 ADAMTS7Q9UKP4 1686 aa28.25■■■□□ 2.11
SQSTM1-210ENST00000506042 KCPQ6ZWJ8 1503 aa28.24■■■□□ 2.11
SQSTM1-210ENST00000506042 H0YIN7 160 aa28.24■■■□□ 2.11
SQSTM1-210ENST00000506042 CHRNA5P30532 468 aa28.24■■■□□ 2.11
SQSTM1-210ENST00000506042 NMRK2Q9NPI5 230 aa28.24■■■□□ 2.11
SQSTM1-210ENST00000506042 ZBTB1Q9Y2K1 713 aa28.24■■■□□ 2.11
SQSTM1-210ENST00000506042 SERPINB2P05120 415 aa28.23■■■□□ 2.11
SQSTM1-210ENST00000506042 CANXP27824 592 aaKnown RBP28.23■■■□□ 2.11
SQSTM1-210ENST00000506042 NFIXQ14938 502 aa28.23■■■□□ 2.11
SQSTM1-210ENST00000506042 TNRC6CQ9HCJ0 1690 aaKnown RBP28.23■■■□□ 2.11
SQSTM1-210ENST00000506042 NPHP1O15259 732 aa28.22■■■□□ 2.11
SQSTM1-210ENST00000506042 TTLL6Q8N841 843 aa28.22■■■□□ 2.11
SQSTM1-210ENST00000506042 UBR2Q8IWV8 1755 aa28.22■■■□□ 2.11
SQSTM1-210ENST00000506042 PER1O15534 1290 aaPredicted RBP28.21■■■□□ 2.11
SQSTM1-210ENST00000506042 NUDCQ9Y266 331 aa28.21■■■□□ 2.11
SQSTM1-210ENST00000506042 LMNB1P20700 586 aa28.19■■■□□ 2.1
SQSTM1-210ENST00000506042 FMNL2Q96PY5 1086 aa28.19■■■□□ 2.1
SQSTM1-210ENST00000506042 AFDNP55196 1824 aaKnown RBP28.18■■■□□ 2.1
SQSTM1-210ENST00000506042 ZNF790Q6PG37 636 aa28.18■■■□□ 2.1
SQSTM1-210ENST00000506042 C2CD5Q86YS7 1000 aa28.18■■■□□ 2.1
SQSTM1-210ENST00000506042 NRXN2Q9P2S2 1712 aa28.18■■■□□ 2.1
SQSTM1-210ENST00000506042 HEG1Q9ULI3 1381 aa28.17■■■□□ 2.1
SQSTM1-210ENST00000506042 PDE6BP35913 854 aa28.17■■■□□ 2.1
SQSTM1-210ENST00000506042 ZNF330Q9Y3S2 320 aaPredicted RBP28.17■■■□□ 2.1
SQSTM1-210ENST00000506042 DLEC1Q9Y238 1755 aa28.16■■■□□ 2.1
SQSTM1-210ENST00000506042 IL6STP40189 918 aaPredicted RBP28.15■■■□□ 2.1
SQSTM1-210ENST00000506042 SMC1BQ8NDV3 1235 aa28.15■■■□□ 2.1
SQSTM1-210ENST00000506042 CARMIL3Q8ND23 1372 aa28.14■■■□□ 2.1
SQSTM1-210ENST00000506042 EIF5P55010 431 aaKnown RBP28.14■■■□□ 2.1
SQSTM1-210ENST00000506042 CNGB1Q14028 1251 aaPredicted RBP28.14■■■□□ 2.1
SQSTM1-210ENST00000506042 BICDL1Q6ZP65 573 aa28.14■■■□□ 2.1
SQSTM1-210ENST00000506042 RTF1Q92541 710 aaKnown RBP28.14■■■□□ 2.1
SQSTM1-210ENST00000506042 SBF1O95248 1867 aa28.13■■■□□ 2.09
SQSTM1-210ENST00000506042 DPY19L2Q6NUT2 758 aa28.13■■■□□ 2.09
SQSTM1-210ENST00000506042 RRAGCQ9HB90 399 aa28.13■■■□□ 2.09
SQSTM1-210ENST00000506042 WDR90Q96KV7 1748 aa28.12■■■□□ 2.09
SQSTM1-210ENST00000506042 CEP350Q5VT06 3117 aa28.12■■■□□ 2.09
SQSTM1-210ENST00000506042 ZNF496Q96IT1 587 aaPredicted RBP28.12■■■□□ 2.09
SQSTM1-210ENST00000506042 BRIP1Q9BX63 1249 aa28.12■■■□□ 2.09
SQSTM1-210ENST00000506042 NEFMP07197 916 aa28.11■■■□□ 2.09
SQSTM1-210ENST00000506042 ST5P78524 1137 aa28.11■■■□□ 2.09
SQSTM1-210ENST00000506042 SETDB2Q96T68 719 aa28.11■■■□□ 2.09
SQSTM1-210ENST00000506042 COL3A1P02461 1466 aaPredicted RBP28.1■■■□□ 2.09
SQSTM1-210ENST00000506042 BTBD11A6QL63 1104 aa28.1■■■□□ 2.09
SQSTM1-210ENST00000506042 VEGFAP15692 232 aaPredicted RBP28.1■■■□□ 2.09
SQSTM1-210ENST00000506042 ZNF622Q969S3 477 aaKnown RBP eCLIP28.1■■■□□ 2.09
SQSTM1-210ENST00000506042 ZNF652Q9Y2D9 606 aa28.1■■■□□ 2.09
SQSTM1-210ENST00000506042 SCN7AQ01118 1682 aa28.1■■■□□ 2.09
SQSTM1-210ENST00000506042 SOGA3Q5TF21 947 aa28.09■■■□□ 2.09
SQSTM1-210ENST00000506042 BCL2L12Q9HB09 334 aa28.09■■■□□ 2.09
SQSTM1-210ENST00000506042 GLTPD2A6NH11 291 aa28.08■■■□□ 2.09
SQSTM1-210ENST00000506042 CNBD1Q8NA66 436 aa28.08■■■□□ 2.09
SQSTM1-210ENST00000506042 IL17REQ8NFR9 667 aa28.08■■■□□ 2.09
SQSTM1-210ENST00000506042 RASSF7Q02833 373 aa28.07■■■□□ 2.08
SQSTM1-210ENST00000506042 SIPA1L3O60292 1781 aaPredicted RBP28.06■■■□□ 2.08
SQSTM1-210ENST00000506042 PRKAR2BP31323 418 aa28.06■■■□□ 2.08
SQSTM1-210ENST00000506042 CNKSR1Q969H4 720 aa28.06■■■□□ 2.08
SQSTM1-210ENST00000506042 TBC1D9BQ66K14 1250 aa28.05■■■□□ 2.08
SQSTM1-210ENST00000506042 CEMIPQ8WUJ3 1361 aa28.05■■■□□ 2.08
SQSTM1-210ENST00000506042 TBC1D2BQ9UPU7 963 aa28.05■■■□□ 2.08
SQSTM1-210ENST00000506042 KLRG1Q96E93 195 aa28.04■■■□□ 2.08
SQSTM1-210ENST00000506042 TIAM2Q8IVF5 1701 aa28.04■■■□□ 2.08
SQSTM1-210ENST00000506042 U2AF1L5P0DN76 240 aaPredicted RBP28.03■■■□□ 2.08
SQSTM1-210ENST00000506042 U2AF1Q01081 240 aaKnown RBP eCLIP28.03■■■□□ 2.08
SQSTM1-210ENST00000506042 DZIP3Q86Y13 1208 aaKnown RBP28.03■■■□□ 2.08
SQSTM1-210ENST00000506042 DNAJC5GQ8N7S2 189 aa28.03■■■□□ 2.08
SQSTM1-210ENST00000506042 SNRPA1P09661 255 aaKnown RBP28.01■■■□□ 2.07
SQSTM1-210ENST00000506042 PRR5LQ6MZQ0 368 aa28.01■■■□□ 2.07
SQSTM1-210ENST00000506042 CLEC4GQ6UXB4 293 aa28.01■■■□□ 2.07
SQSTM1-210ENST00000506042 STYK1Q6J9G0 422 aa28■■■□□ 2.07
SQSTM1-210ENST00000506042 RSPH6AQ9H0K4 717 aa28■■■□□ 2.07
SQSTM1-210ENST00000506042 HTATSF1O43719 755 aaKnown RBP27.99■■■□□ 2.07
SQSTM1-210ENST00000506042 ERFEQ4G0M1 354 aa27.99■■■□□ 2.07
SQSTM1-210ENST00000506042 TAOK3Q9H2K8 898 aa27.99■■■□□ 2.07
SQSTM1-210ENST00000506042 CCDC88AQ3V6T2 1871 aa27.98■■■□□ 2.07
SQSTM1-210ENST00000506042 C21orf2O43822 256 aa27.98■■■□□ 2.07
SQSTM1-210ENST00000506042 A1BGP04217 495 aa27.98■■■□□ 2.07
SQSTM1-210ENST00000506042 NBPF5PQ86XG9 351 aaPredicted RBP27.98■■■□□ 2.07
SQSTM1-210ENST00000506042 LTBP3Q9NS15 1303 aa27.97■■■□□ 2.07
SQSTM1-210ENST00000506042 RGL2O15211 777 aa27.97■■■□□ 2.07
SQSTM1-210ENST00000506042 MASTLQ96GX5 879 aa27.97■■■□□ 2.07
SQSTM1-210ENST00000506042 NFKBIEO00221 500 aa27.96■■■□□ 2.07
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms