RNA–Protein interactions for RNA: ENST00000504173.1

NUP54-203, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 314 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-203ENST00000504173 LMOD3Q0VAK6 560 aa13.17□□□□□ -0.3
NUP54-203ENST00000504173 LGR6Q9HBX8 967 aa13.17□□□□□ -0.3
NUP54-203ENST00000504173 BCS1LQ9Y276 419 aa13.17□□□□□ -0.3
NUP54-203ENST00000504173 SCN11AQ9UI33 1791 aa13.17□□□□□ -0.3
NUP54-203ENST00000504173 KIF13BQ9NQT8 1826 aa13.16□□□□□ -0.3
NUP54-203ENST00000504173 C5P01031 1676 aa13.16□□□□□ -0.3
NUP54-203ENST00000504173 ERVV-2B6SEH9 535 aa13.16□□□□□ -0.3
NUP54-203ENST00000504173 CABP4P57796 275 aa13.16□□□□□ -0.3
NUP54-203ENST00000504173 MCM10Q7L590 875 aa13.16□□□□□ -0.3
NUP54-203ENST00000504173 TMOD3Q9NYL9 352 aa13.16□□□□□ -0.3
NUP54-203ENST00000504173 VIRMAQ69YN4 1812 aaKnown RBP13.16□□□□□ -0.3
NUP54-203ENST00000504173 ADAMTS7Q9UKP4 1686 aa13.15□□□□□ -0.3
NUP54-203ENST00000504173 DCTN1Q14203 1278 aa13.15□□□□□ -0.3
NUP54-203ENST00000504173 IL17REQ8NFR9 667 aa13.15□□□□□ -0.3
NUP54-203ENST00000504173 ITGB4P16144 1822 aa13.14□□□□□ -0.31
NUP54-203ENST00000504173 TEFQ10587 303 aa13.14□□□□□ -0.31
NUP54-203ENST00000504173 SLC52A2Q9HAB3 445 aa13.14□□□□□ -0.31
NUP54-203ENST00000504173 CEMIPQ8WUJ3 1361 aa13.14□□□□□ -0.31
NUP54-203ENST00000504173 MRC1P22897 1456 aa13.14□□□□□ -0.31
NUP54-203ENST00000504173 POTEDQ86YR6 584 aa13.13□□□□□ -0.31
NUP54-203ENST00000504173 THUMPD2Q9BTF0 503 aaKnown RBP13.13□□□□□ -0.31
NUP54-203ENST00000504173 CREBZFQ9NS37 354 aa13.13□□□□□ -0.31
NUP54-203ENST00000504173 TRIM35Q9UPQ4 493 aa13.13□□□□□ -0.31
NUP54-203ENST00000504173 SALL2Q9Y467 1007 aaPredicted RBP13.13□□□□□ -0.31
NUP54-203ENST00000504173 TNRC18O15417 2968 aaPredicted RBP13.13□□□□□ -0.31
NUP54-203ENST00000504173 ZC3H4Q9UPT8 1303 aaKnown RBP13.13□□□□□ -0.31
NUP54-203ENST00000504173 NFATC2IPQ8NCF5 419 aa13.12□□□□□ -0.31
NUP54-203ENST00000504173 PIGBQ92521 554 aa13.12□□□□□ -0.31
NUP54-203ENST00000504173 NCBP3Q53F19 620 aaKnown RBP13.11□□□□□ -0.31
NUP54-203ENST00000504173 AMIGO3Q86WK7 504 aa13.11□□□□□ -0.31
NUP54-203ENST00000504173 NGEFQ8N5V2 710 aa13.11□□□□□ -0.31
NUP54-203ENST00000504173 AIDAQ96BJ3 306 aa13.11□□□□□ -0.31
NUP54-203ENST00000504173 PDE4DIPQ5VU43 2346 aa13.11□□□□□ -0.31
NUP54-203ENST00000504173 TAF1LQ8IZX4 1826 aa13.11□□□□□ -0.31
NUP54-203ENST00000504173 C4BP0C0L5 1744 aa13.1□□□□□ -0.31
NUP54-203ENST00000504173 A0A0G2JLW4 131 aa13.1□□□□□ -0.31
NUP54-203ENST00000504173 VEGFAP15692 232 aaPredicted RBP13.1□□□□□ -0.31
NUP54-203ENST00000504173 CCDC27Q2M243 656 aa13.1□□□□□ -0.31
NUP54-203ENST00000504173 RNF181Q9P0P0 153 aa13.1□□□□□ -0.31
NUP54-203ENST00000504173 BRCA1P38398 1863 aaKnown RBP13.1□□□□□ -0.31
NUP54-203ENST00000504173 CNTNAP1P78357 1384 aa13.09□□□□□ -0.31
NUP54-203ENST00000504173 ARFGEF1Q9Y6D6 1849 aa13.09□□□□□ -0.31
NUP54-203ENST00000504173 BTBD11A6QL63 1104 aa13.09□□□□□ -0.31
NUP54-203ENST00000504173 SSFA2P28290 1259 aa13.09□□□□□ -0.31
NUP54-203ENST00000504173 LBX1P52954 281 aa13.09□□□□□ -0.31
NUP54-203ENST00000504173 CALD1Q05682 793 aaKnown RBP13.09□□□□□ -0.31
NUP54-203ENST00000504173 TAF7Q15545 349 aaPredicted RBP13.09□□□□□ -0.31
NUP54-203ENST00000504173 UBR3Q6ZT12 1888 aa13.09□□□□□ -0.31
NUP54-203ENST00000504173 SMARCC1Q92922 1105 aaPredicted RBP13.09□□□□□ -0.31
NUP54-203ENST00000504173 WBP1LQ9NX94 342 aa13.09□□□□□ -0.31
NUP54-203ENST00000504173 SIPA1L3O60292 1781 aaPredicted RBP13.09□□□□□ -0.31
NUP54-203ENST00000504173 N4BP2Q86UW6 1770 aaPredicted RBP13.09□□□□□ -0.31
NUP54-203ENST00000504173 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.08□□□□□ -0.32
NUP54-203ENST00000504173 HNRNPUQ00839 825 aaKnown RBP eCLIP13.08□□□□□ -0.32
NUP54-203ENST00000504173 SLC39A6Q13433 755 aa13.08□□□□□ -0.32
NUP54-203ENST00000504173 WWC1Q8IX03 1113 aa13.08□□□□□ -0.32
NUP54-203ENST00000504173 AK7Q96M32 723 aa13.08□□□□□ -0.32
NUP54-203ENST00000504173 ATG3Q9NT62 314 aa13.08□□□□□ -0.32
NUP54-203ENST00000504173 MKRN1Q9UHC7 482 aaKnown RBP13.08□□□□□ -0.32
NUP54-203ENST00000504173 ASAP1Q9ULH1 1129 aa13.08□□□□□ -0.32
NUP54-203ENST00000504173 PALLDQ8WX93 1383 aa13.07□□□□□ -0.32
NUP54-203ENST00000504173 DPEP1P16444 411 aa13.07□□□□□ -0.32
NUP54-203ENST00000504173 TTC5Q8N0Z6 440 aa13.07□□□□□ -0.32
NUP54-203ENST00000504173 LAS1LQ9Y4W2 734 aaKnown RBP13.07□□□□□ -0.32
NUP54-203ENST00000504173 GLTPD2A6NH11 291 aa13.06□□□□□ -0.32
NUP54-203ENST00000504173 CCDC85CA6NKD9 419 aa13.06□□□□□ -0.32
NUP54-203ENST00000504173 MMP10P09238 476 aa13.06□□□□□ -0.32
NUP54-203ENST00000504173 ZNF790Q6PG37 636 aa13.06□□□□□ -0.32
NUP54-203ENST00000504173 MIS18AQ9NYP9 233 aa13.06□□□□□ -0.32
NUP54-203ENST00000504173 TSPYL4Q9UJ04 414 aa13.06□□□□□ -0.32
NUP54-203ENST00000504173 HSPA8P11142 646 aaKnown RBP13.05□□□□□ -0.32
NUP54-203ENST00000504173 KCNA3P22001 575 aa13.05□□□□□ -0.32
NUP54-203ENST00000504173 GNAI1P63096 354 aa13.05□□□□□ -0.32
NUP54-203ENST00000504173 SMIM5Q71RC9 77 aa13.05□□□□□ -0.32
NUP54-203ENST00000504173 WDR63Q8IWG1 891 aa13.05□□□□□ -0.32
NUP54-203ENST00000504173 CFAP44Q96MT7 982 aa13.05□□□□□ -0.32
NUP54-203ENST00000504173 RBM42Q9BTD8 480 aaKnown RBP13.05□□□□□ -0.32
NUP54-203ENST00000504173 IFT57Q9NWB7 429 aa13.05□□□□□ -0.32
NUP54-203ENST00000504173 BABAM1Q9NWV8 329 aa13.05□□□□□ -0.32
NUP54-203ENST00000504173 LOC102724428A0A0B4J2F2 783 aa13.04□□□□□ -0.32
NUP54-203ENST00000504173 KCNQ3O43525 872 aa13.04□□□□□ -0.32
NUP54-203ENST00000504173 PTCD1O75127 700 aaKnown RBP13.04□□□□□ -0.32
NUP54-203ENST00000504173 PHF14O94880 888 aa13.04□□□□□ -0.32
NUP54-203ENST00000504173 SIK1P57059 783 aa13.04□□□□□ -0.32
NUP54-203ENST00000504173 IL16Q14005 1332 aa13.04□□□□□ -0.32
NUP54-203ENST00000504173 KDM3BQ7LBC6 1761 aa13.04□□□□□ -0.32
NUP54-203ENST00000504173 CHL1O00533 1208 aa13.03□□□□□ -0.32
NUP54-203ENST00000504173 FMNL2Q96PY5 1086 aa13.03□□□□□ -0.32
NUP54-203ENST00000504173 ZNF521Q96K83 1311 aa13.03□□□□□ -0.32
NUP54-203ENST00000504173 SBF1O95248 1867 aa13.03□□□□□ -0.32
NUP54-203ENST00000504173 UBR2Q8IWV8 1755 aa13.02□□□□□ -0.32
NUP54-203ENST00000504173 ZNF853P0CG23 659 aa13.02□□□□□ -0.33
NUP54-203ENST00000504173 ATP6V1AP38606 617 aa13.02□□□□□ -0.33
NUP54-203ENST00000504173 ZNF496Q96IT1 587 aaPredicted RBP13.02□□□□□ -0.33
NUP54-203ENST00000504173 MBIPQ9NS73 344 aa13.02□□□□□ -0.33
NUP54-203ENST00000504173 PIM2Q9P1W9 311 aa13.02□□□□□ -0.33
NUP54-203ENST00000504173 VEGFBP49765 207 aa13.01□□□□□ -0.33
NUP54-203ENST00000504173 GOLGA2Q08379 1002 aa13.01□□□□□ -0.33
NUP54-203ENST00000504173 CCDC87Q9NVE4 849 aa13.01□□□□□ -0.33
NUP54-203ENST00000504173 HEG1Q9ULI3 1381 aa13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 83.2 ms