RNA–Protein interactions for RNA: ENST00000503215.5

SCLT1-204, Transcript of sodium channel and clathrin linker 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SCLT1, Length 1,364 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCLT1-204ENST00000503215 ZPR1O75312 459 aa21.74■■□□□ 1.07
SCLT1-204ENST00000503215 FCHSD2O94868 740 aa21.74■■□□□ 1.07
SCLT1-204ENST00000503215 MCM10Q7L590 875 aa21.74■■□□□ 1.07
SCLT1-204ENST00000503215 KIF13BQ9NQT8 1826 aa21.73■■□□□ 1.07
SCLT1-204ENST00000503215 N4BP2Q86UW6 1770 aaPredicted RBP21.73■■□□□ 1.07
SCLT1-204ENST00000503215 UBR2Q8IWV8 1755 aa21.73■■□□□ 1.07
SCLT1-204ENST00000503215 POLRMTO00411 1230 aaKnown RBP21.73■■□□□ 1.07
SCLT1-204ENST00000503215 KCNA3P22001 575 aa21.73■■□□□ 1.07
SCLT1-204ENST00000503215 DCTN1Q14203 1278 aa21.73■■□□□ 1.07
SCLT1-204ENST00000503215 NARFQ9UHQ1 456 aa21.73■■□□□ 1.07
SCLT1-204ENST00000503215 COL15A1P39059 1388 aa21.72■■□□□ 1.07
SCLT1-204ENST00000503215 HEG1Q9ULI3 1381 aa21.72■■□□□ 1.07
SCLT1-204ENST00000503215 BCS1LQ9Y276 419 aa21.72■■□□□ 1.07
SCLT1-204ENST00000503215 SIPA1L3O60292 1781 aaPredicted RBP21.71■■□□□ 1.07
SCLT1-204ENST00000503215 BTBD11A6QL63 1104 aa21.71■■□□□ 1.07
SCLT1-204ENST00000503215 STARD3NLO95772 234 aa21.71■■□□□ 1.07
SCLT1-204ENST00000503215 NFIXQ14938 502 aa21.71■■□□□ 1.07
SCLT1-204ENST00000503215 EIF5P55010 431 aaKnown RBP21.7■■□□□ 1.06
SCLT1-204ENST00000503215 ATP10DQ9P241 1426 aa21.7■■□□□ 1.06
SCLT1-204ENST00000503215 PRAMEF22A3QJZ6 481 aa21.69■■□□□ 1.06
SCLT1-204ENST00000503215 A1BGP04217 495 aa21.69■■□□□ 1.06
SCLT1-204ENST00000503215 CHRNA5P30532 468 aa21.68■■□□□ 1.06
SCLT1-204ENST00000503215 FMNL2Q96PY5 1086 aa21.68■■□□□ 1.06
SCLT1-204ENST00000503215 C1QTNF8P60827 252 aa21.67■■□□□ 1.06
SCLT1-204ENST00000503215 ADCY9O60503 1353 aa21.67■■□□□ 1.06
SCLT1-204ENST00000503215 ZNF526Q8TF50 670 aaPredicted RBP21.66■■□□□ 1.06
SCLT1-204ENST00000503215 RTF1Q92541 710 aaKnown RBP21.66■■□□□ 1.06
SCLT1-204ENST00000503215 ZNF330Q9Y3S2 320 aaPredicted RBP21.66■■□□□ 1.06
SCLT1-204ENST00000503215 USP16Q9Y5T5 823 aa21.66■■□□□ 1.06
SCLT1-204ENST00000503215 PIP4K2AP48426 406 aaPredicted RBP21.65■■□□□ 1.06
SCLT1-204ENST00000503215 BICDL1Q6ZP65 573 aa21.65■■□□□ 1.06
SCLT1-204ENST00000503215 ARHGAP27Q6ZUM4 889 aa21.65■■□□□ 1.06
SCLT1-204ENST00000503215 PLEKHF1Q96S99 279 aa21.65■■□□□ 1.06
SCLT1-204ENST00000503215 TEX13AQ9BXU3 409 aaPredicted RBP21.65■■□□□ 1.06
SCLT1-204ENST00000503215 MIS18AQ9NYP9 233 aa21.65■■□□□ 1.06
SCLT1-204ENST00000503215 TBC1D2BQ9UPU7 963 aa21.65■■□□□ 1.06
SCLT1-204ENST00000503215 GIGYF1O75420 1035 aaPredicted RBP21.64■■□□□ 1.06
SCLT1-204ENST00000503215 DDX10Q13206 875 aaKnown RBP21.64■■□□□ 1.06
SCLT1-204ENST00000503215 SERPINB2P05120 415 aa21.63■■□□□ 1.05
SCLT1-204ENST00000503215 TBC1D9BQ66K14 1250 aa21.62■■□□□ 1.05
SCLT1-204ENST00000503215 PIM2Q9P1W9 311 aa21.62■■□□□ 1.05
SCLT1-204ENST00000503215 BRCA1P38398 1863 aaKnown RBP21.62■■□□□ 1.05
SCLT1-204ENST00000503215 HTATSF1O43719 755 aaKnown RBP21.61■■□□□ 1.05
SCLT1-204ENST00000503215 IL6STP40189 918 aaPredicted RBP21.61■■□□□ 1.05
SCLT1-204ENST00000503215 THUMPD2Q9BTF0 503 aaKnown RBP21.61■■□□□ 1.05
SCLT1-204ENST00000503215 A0A087WZG4 1122 aa21.61■■□□□ 1.05
SCLT1-204ENST00000503215 CARMIL3Q8ND23 1372 aa21.6■■□□□ 1.05
SCLT1-204ENST00000503215 AFDNP55196 1824 aaKnown RBP21.6■■□□□ 1.05
SCLT1-204ENST00000503215 TAF7Q15545 349 aaPredicted RBP21.6■■□□□ 1.05
SCLT1-204ENST00000503215 DALRD3Q5D0E6 543 aaKnown RBP21.6■■□□□ 1.05
SCLT1-204ENST00000503215 GPBP1L1Q9HC44 474 aaPredicted RBP21.6■■□□□ 1.05
SCLT1-204ENST00000503215 CAMTA2O94983 1202 aa21.59■■□□□ 1.05
SCLT1-204ENST00000503215 SNRPA1P09661 255 aaKnown RBP21.59■■□□□ 1.05
SCLT1-204ENST00000503215 CCDC24Q8N4L8 307 aa21.59■■□□□ 1.05
SCLT1-204ENST00000503215 NBPF26B4DH59 902 aa21.58■■□□□ 1.04
SCLT1-204ENST00000503215 NBPF10Q6P3W6 841 aaKnown RBP21.58■■□□□ 1.04
SCLT1-204ENST00000503215 NBPF15Q8N660 670 aa21.58■■□□□ 1.04
SCLT1-204ENST00000503215 NFE2L2Q16236 605 aa21.57■■□□□ 1.04
SCLT1-204ENST00000503215 NRXN2Q9P2S2 1712 aa21.56■■□□□ 1.04
SCLT1-204ENST00000503215 SENP3-EIF4A1A0A087X0R7 540 aa21.56■■□□□ 1.04
SCLT1-204ENST00000503215 RALBP1Q15311 655 aa21.56■■□□□ 1.04
SCLT1-204ENST00000503215 DZIP3Q86Y13 1208 aaKnown RBP21.55■■□□□ 1.04
SCLT1-204ENST00000503215 NEFMP07197 916 aa21.54■■□□□ 1.04
SCLT1-204ENST00000503215 C2CD5Q86YS7 1000 aa21.54■■□□□ 1.04
SCLT1-204ENST00000503215 DLG5Q8TDM6 1919 aa21.54■■□□□ 1.04
SCLT1-204ENST00000503215 C9orf131Q5VYM1 1079 aa21.53■■□□□ 1.04
SCLT1-204ENST00000503215 PRR5LQ6MZQ0 368 aa21.53■■□□□ 1.04
SCLT1-204ENST00000503215 SCN7AQ01118 1682 aa21.52■■□□□ 1.04
SCLT1-204ENST00000503215 ARFGEF1Q9Y6D6 1849 aa21.52■■□□□ 1.04
SCLT1-204ENST00000503215 KIF3CO14782 793 aa21.51■■□□□ 1.03
SCLT1-204ENST00000503215 NPM2Q86SE8 214 aaKnown RBP21.51■■□□□ 1.03
SCLT1-204ENST00000503215 MAPK8IP3Q9UPT6 1336 aa21.5■■□□□ 1.03
SCLT1-204ENST00000503215 SETDB2Q96T68 719 aa21.5■■□□□ 1.03
SCLT1-204ENST00000503215 H0YIN7 160 aa21.49■■□□□ 1.03
SCLT1-204ENST00000503215 PRELPP51888 382 aa21.49■■□□□ 1.03
SCLT1-204ENST00000503215 EIF4A1P60842 406 aaKnown RBP21.49■■□□□ 1.03
SCLT1-204ENST00000503215 RASSF7Q02833 373 aa21.48■■□□□ 1.03
SCLT1-204ENST00000503215 TTLL6Q8N841 843 aa21.48■■□□□ 1.03
SCLT1-204ENST00000503215 BRIP1Q9BX63 1249 aa21.48■■□□□ 1.03
SCLT1-204ENST00000503215 MYBBP1AQ9BQG0 1328 aaKnown RBP21.48■■□□□ 1.03
SCLT1-204ENST00000503215 ANKRD31Q8N7Z5 1873 aa21.48■■□□□ 1.03
SCLT1-204ENST00000503215 RIPK4P57078 832 aa21.48■■□□□ 1.03
SCLT1-204ENST00000503215 CCDC146Q8IYE0 955 aa21.48■■□□□ 1.03
SCLT1-204ENST00000503215 PNISRQ8TF01 805 aaKnown RBP21.48■■□□□ 1.03
SCLT1-204ENST00000503215 PNNQ9H307 717 aaKnown RBP21.48■■□□□ 1.03
SCLT1-204ENST00000503215 NMRK2Q9NPI5 230 aa21.48■■□□□ 1.03
SCLT1-204ENST00000503215 RNF181Q9P0P0 153 aa21.48■■□□□ 1.03
SCLT1-204ENST00000503215 HLFQ16534 295 aa21.47■■□□□ 1.03
SCLT1-204ENST00000503215 NGEFQ8N5V2 710 aa21.47■■□□□ 1.03
SCLT1-204ENST00000503215 CNBD1Q8NA66 436 aa21.47■■□□□ 1.03
SCLT1-204ENST00000503215 ZNF622Q969S3 477 aaKnown RBP eCLIP21.47■■□□□ 1.031e-6■□□□□ 9.1
SCLT1-204ENST00000503215 RRP7AQ9Y3A4 280 aaKnown RBP21.47■■□□□ 1.03
SCLT1-204ENST00000503215 TMPOP42166 694 aaKnown RBP21.46■■□□□ 1.03
SCLT1-204ENST00000503215 CLEC4GQ6UXB4 293 aa21.45■■□□□ 1.02
SCLT1-204ENST00000503215 ZNF219Q9P2Y4 722 aaPredicted RBP21.45■■□□□ 1.02
SCLT1-204ENST00000503215 BCORQ6W2J9 1755 aa21.45■■□□□ 1.02
SCLT1-204ENST00000503215 KDM3BQ7LBC6 1761 aa21.45■■□□□ 1.02
SCLT1-204ENST00000503215 PDE6BP35913 854 aa21.44■■□□□ 1.02
SCLT1-204ENST00000503215 DLEC1Q9Y238 1755 aa21.43■■□□□ 1.02
SCLT1-204ENST00000503215 FAM177BA6PVY3 158 aa21.43■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms