RNA–Protein interactions for RNA: ENST00000501271.2

CLIP1-204, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,426 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-204ENST00000501271 ADCY9O60503 1353 aa12.05□□□□□ -0.48
CLIP1-204ENST00000501271 RGPD5Q99666 1765 aa12.05□□□□□ -0.48
CLIP1-204ENST00000501271 AOX1Q06278 1338 aa12.05□□□□□ -0.48
CLIP1-204ENST00000501271 TRPM3Q9HCF6 1732 aaPredicted RBP12.05□□□□□ -0.48
CLIP1-204ENST00000501271 PI4KAP2A4QPH2 592 aa12.05□□□□□ -0.48
CLIP1-204ENST00000501271 BTBD11A6QL63 1104 aa12.05□□□□□ -0.48
CLIP1-204ENST00000501271 BEND3Q5T5X7 828 aa12.05□□□□□ -0.48
CLIP1-204ENST00000501271 NUTM1Q86Y26 1132 aa12.05□□□□□ -0.48
CLIP1-204ENST00000501271 PI4KAP1Q8N8J0 262 aa12.05□□□□□ -0.48
CLIP1-204ENST00000501271 ORAI2Q96SN7 254 aa12.05□□□□□ -0.48
CLIP1-204ENST00000501271 IL25Q9H293 177 aa12.05□□□□□ -0.48
CLIP1-204ENST00000501271 SIPA1L3O60292 1781 aaPredicted RBP12.05□□□□□ -0.48
CLIP1-204ENST00000501271 SURF6O75683 361 aaKnown RBP12.05□□□□□ -0.48
CLIP1-204ENST00000501271 NEK4P51957 841 aa12.05□□□□□ -0.48
CLIP1-204ENST00000501271 TEFQ10587 303 aa12.05□□□□□ -0.48
CLIP1-204ENST00000501271 DNAAF4Q8WXU2 420 aa12.05□□□□□ -0.48
CLIP1-204ENST00000501271 CWC22Q9HCG8 908 aaKnown RBP12.05□□□□□ -0.48
CLIP1-204ENST00000501271 ANO2Q9NQ90 1003 aa12.05□□□□□ -0.48
CLIP1-204ENST00000501271 SRGAP3O43295 1099 aa12.04□□□□□ -0.48
CLIP1-204ENST00000501271 GCP02774 474 aa12.04□□□□□ -0.48
CLIP1-204ENST00000501271 KLHL40Q2TBA0 621 aa12.04□□□□□ -0.48
CLIP1-204ENST00000501271 MCTP1Q6DN14 999 aa12.04□□□□□ -0.48
CLIP1-204ENST00000501271 ARHGEF25Q86VW2 580 aa12.04□□□□□ -0.48
CLIP1-204ENST00000501271 ZDHHC9Q9Y397 364 aa12.04□□□□□ -0.48
CLIP1-204ENST00000501271 PLEKHO1Q53GL0 409 aaPredicted RBP12.03□□□□□ -0.48
CLIP1-204ENST00000501271 RHPN1Q8TCX5 695 aa12.03□□□□□ -0.48
CLIP1-204ENST00000501271 ADAMTSL3P82987 1691 aa12.03□□□□□ -0.48
CLIP1-204ENST00000501271 CRYBG1Q9Y4K1 1723 aa12.03□□□□□ -0.48
CLIP1-204ENST00000501271 RNMTO43148 476 aaKnown RBP12.03□□□□□ -0.48
CLIP1-204ENST00000501271 RAB11FIP3O75154 756 aa12.03□□□□□ -0.48
CLIP1-204ENST00000501271 PI4K2BQ8TCG2 481 aa12.03□□□□□ -0.48
CLIP1-204ENST00000501271 DDX49Q9Y6V7 483 aaKnown RBP12.03□□□□□ -0.48
CLIP1-204ENST00000501271 NPHP4O75161 1426 aaPredicted RBP12.03□□□□□ -0.48
CLIP1-204ENST00000501271 ZBTB22O15209 634 aa12.02□□□□□ -0.48
CLIP1-204ENST00000501271 MAP4K4O95819 1239 aaPredicted RBP12.02□□□□□ -0.48
CLIP1-204ENST00000501271 MCCP23508 829 aa12.02□□□□□ -0.48
CLIP1-204ENST00000501271 TMX3Q96JJ7 454 aa12.02□□□□□ -0.48
CLIP1-204ENST00000501271 OVOS2A0A0G2JMS6 1433 aa12.02□□□□□ -0.49
CLIP1-204ENST00000501271 AMOTQ4VCS5 1084 aa12.02□□□□□ -0.49
CLIP1-204ENST00000501271 ANKRD24Q8TF21 1146 aa12.02□□□□□ -0.49
CLIP1-204ENST00000501271 LMBRD1Q9NUN5 540 aa12.02□□□□□ -0.49
CLIP1-204ENST00000501271 ANAPC15P60006 121 aa12.01□□□□□ -0.49
CLIP1-204ENST00000501271 PROSER3Q2NL68 480 aa12.01□□□□□ -0.49
CLIP1-204ENST00000501271 ANO8Q9HCE9 1232 aaPredicted RBP12.01□□□□□ -0.49
CLIP1-204ENST00000501271 ADAMTS7Q9UKP4 1686 aa12.01□□□□□ -0.49
CLIP1-204ENST00000501271 PRAMEF22A3QJZ6 481 aa12.01□□□□□ -0.49
CLIP1-204ENST00000501271 C1orf141Q5JVX7 400 aa12.01□□□□□ -0.49
CLIP1-204ENST00000501271 LMOD2Q6P5Q4 547 aa12.01□□□□□ -0.49
CLIP1-204ENST00000501271 KIF1BPQ96EK5 621 aa12.01□□□□□ -0.49
CLIP1-204ENST00000501271 AXIN2Q9Y2T1 843 aa12.01□□□□□ -0.49
CLIP1-204ENST00000501271 IL17RAQ96F46 866 aa12□□□□□ -0.49
CLIP1-204ENST00000501271 CHAMP1Q96JM3 812 aa12□□□□□ -0.49
CLIP1-204ENST00000501271 DBF4Q9UBU7 674 aaPredicted RBP12□□□□□ -0.49
CLIP1-204ENST00000501271 HEG1Q9ULI3 1381 aa12□□□□□ -0.49
CLIP1-204ENST00000501271 GIGYF1O75420 1035 aaPredicted RBP12□□□□□ -0.49
CLIP1-204ENST00000501271 MCM2P49736 904 aa12□□□□□ -0.49
CLIP1-204ENST00000501271 NOL8Q76FK4 1167 aaKnown RBP12□□□□□ -0.49
CLIP1-204ENST00000501271 CHMP4AQ9BY43 222 aa12□□□□□ -0.49
CLIP1-204ENST00000501271 CUL4AQ13619 759 aa11.99□□□□□ -0.49
CLIP1-204ENST00000501271 UPF3BQ9BZI7 483 aaKnown RBP11.99□□□□□ -0.49
CLIP1-204ENST00000501271 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.99□□□□□ -0.49
CLIP1-204ENST00000501271 MAP3K2Q9Y2U5 619 aa11.99□□□□□ -0.49
CLIP1-204ENST00000501271 HSPA4P34932 840 aa11.99□□□□□ -0.49
CLIP1-204ENST00000501271 C5P01031 1676 aa11.99□□□□□ -0.49
CLIP1-204ENST00000501271 KIF1AQ12756 1690 aa11.99□□□□□ -0.49
CLIP1-204ENST00000501271 ALS2Q96Q42 1657 aa11.98□□□□□ -0.49
CLIP1-204ENST00000501271 MTX1Q13505 466 aa11.98□□□□□ -0.49
CLIP1-204ENST00000501271 FOXD4L5Q5VV16 416 aaPredicted RBP11.98□□□□□ -0.49
CLIP1-204ENST00000501271 CAVIN1Q6NZI2 390 aaKnown RBP11.98□□□□□ -0.49
CLIP1-204ENST00000501271 FOXD4L4Q8WXT5 416 aaPredicted RBP11.98□□□□□ -0.49
CLIP1-204ENST00000501271 SGSM2O43147 1006 aa11.98□□□□□ -0.49
CLIP1-204ENST00000501271 PRPF40AO75400 957 aaKnown RBP11.98□□□□□ -0.49
CLIP1-204ENST00000501271 CWF19L2Q2TBE0 894 aaKnown RBP11.98□□□□□ -0.49
CLIP1-204ENST00000501271 GPT2Q8TD30 523 aa11.98□□□□□ -0.49
CLIP1-204ENST00000501271 SCN11AQ9UI33 1791 aa11.98□□□□□ -0.49
CLIP1-204ENST00000501271 RAD50Q92878 1312 aa11.98□□□□□ -0.49
CLIP1-204ENST00000501271 NCLP19338 710 aaKnown RBP11.97□□□□□ -0.49
CLIP1-204ENST00000501271 HSP90AB4PQ58FF6 505 aa11.97□□□□□ -0.49
CLIP1-204ENST00000501271 LMTK3Q96Q04 1460 aa11.97□□□□□ -0.49
CLIP1-204ENST00000501271 USP42Q9H9J4 1324 aaKnown RBP11.97□□□□□ -0.49
CLIP1-204ENST00000501271 EPB41L2O43491 1005 aaKnown RBP11.97□□□□□ -0.49
CLIP1-204ENST00000501271 ALDH1L1O75891 902 aa11.97□□□□□ -0.49
CLIP1-204ENST00000501271 OS9Q13438 667 aaPredicted RBP11.97□□□□□ -0.49
CLIP1-204ENST00000501271 ZSCAN23Q3MJ62 389 aa11.97□□□□□ -0.49
CLIP1-204ENST00000501271 KSR2Q6VAB6 950 aa11.97□□□□□ -0.49
CLIP1-204ENST00000501271 KRT28Q7Z3Y7 464 aa11.97□□□□□ -0.49
CLIP1-204ENST00000501271 CNTROBQ8N137 903 aa11.97□□□□□ -0.49
CLIP1-204ENST00000501271 C9orf78Q9NZ63 289 aaPredicted RBP11.97□□□□□ -0.49
CLIP1-204ENST00000501271 C1orf167Q5SNV9 1468 aa11.97□□□□□ -0.49
CLIP1-204ENST00000501271 ERBB3P21860 1342 aa11.97□□□□□ -0.49
CLIP1-204ENST00000501271 BRD1O95696 1058 aa11.96□□□□□ -0.49
CLIP1-204ENST00000501271 ZNF445P59923 1031 aa11.96□□□□□ -0.49
CLIP1-204ENST00000501271 INTS4Q96HW7 963 aaKnown RBP11.96□□□□□ -0.49
CLIP1-204ENST00000501271 LSG1Q9H089 658 aaKnown RBP11.96□□□□□ -0.49
CLIP1-204ENST00000501271 PA2G4Q9UQ80 394 aaKnown RBP11.96□□□□□ -0.49
CLIP1-204ENST00000501271 TTC41PQ6P2S7 1318 aa11.96□□□□□ -0.5
CLIP1-204ENST00000501271 NASPP49321 788 aaPredicted RBP11.95□□□□□ -0.5
CLIP1-204ENST00000501271 RBM27Q9P2N5 1060 aaKnown RBP11.95□□□□□ -0.5
CLIP1-204ENST00000501271 ERBB4Q15303 1308 aa11.95□□□□□ -0.5
CLIP1-204ENST00000501271 ZC3H6P61129 1189 aaKnown RBP11.95□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms