RNA–Protein interactions for RNA: ENST00000497311.5

SMC4-226, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 5

Gene SMC4, Length 708 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-226ENST00000497311 COL15A1P39059 1388 aa22.99■■□□□ 1.27
SMC4-226ENST00000497311 POLRMTO00411 1230 aaKnown RBP22.98■■□□□ 1.27
SMC4-226ENST00000497311 STARD3NLO95772 234 aa22.98■■□□□ 1.27
SMC4-226ENST00000497311 PRKAR2BP31323 418 aa22.98■■□□□ 1.27
SMC4-226ENST00000497311 NARFQ9UHQ1 456 aa22.98■■□□□ 1.27
SMC4-226ENST00000497311 UBR2Q8IWV8 1755 aa22.97■■□□□ 1.27
SMC4-226ENST00000497311 KCNA3P22001 575 aa22.97■■□□□ 1.27
SMC4-226ENST00000497311 ZNF790Q6PG37 636 aa22.97■■□□□ 1.27
SMC4-226ENST00000497311 ARHGAP27Q6ZUM4 889 aa22.97■■□□□ 1.27
SMC4-226ENST00000497311 RSPH6AQ9H0K4 717 aa22.97■■□□□ 1.27
SMC4-226ENST00000497311 PIM2Q9P1W9 311 aa22.97■■□□□ 1.27
SMC4-226ENST00000497311 CANXP27824 592 aaKnown RBP22.96■■□□□ 1.27
SMC4-226ENST00000497311 PPP2R1AP30153 589 aa22.96■■□□□ 1.27
SMC4-226ENST00000497311 ZNF496Q96IT1 587 aaPredicted RBP22.96■■□□□ 1.27
SMC4-226ENST00000497311 PHACTR3Q96KR7 559 aa22.96■■□□□ 1.27
SMC4-226ENST00000497311 BRCA1P38398 1863 aaKnown RBP22.95■■□□□ 1.26
SMC4-226ENST00000497311 TEX13AQ9BXU3 409 aaPredicted RBP22.95■■□□□ 1.26
SMC4-226ENST00000497311 HEG1Q9ULI3 1381 aa22.94■■□□□ 1.26
SMC4-226ENST00000497311 U2AF1L5P0DN76 240 aaPredicted RBP22.94■■□□□ 1.26
SMC4-226ENST00000497311 U2AF1Q01081 240 aaKnown RBP eCLIP22.94■■□□□ 1.26
SMC4-226ENST00000497311 CEMIPQ8WUJ3 1361 aa22.93■■□□□ 1.26
SMC4-226ENST00000497311 NFIXQ14938 502 aa22.93■■□□□ 1.26
SMC4-226ENST00000497311 DALRD3Q5D0E6 543 aaKnown RBP22.93■■□□□ 1.26
SMC4-226ENST00000497311 SIPA1L3O60292 1781 aaPredicted RBP22.92■■□□□ 1.26
SMC4-226ENST00000497311 A0A087WZG4 1122 aa22.92■■□□□ 1.26
SMC4-226ENST00000497311 FMNL2Q96PY5 1086 aa22.92■■□□□ 1.26
SMC4-226ENST00000497311 BCL2L12Q9HB09 334 aa22.92■■□□□ 1.26
SMC4-226ENST00000497311 BTBD11A6QL63 1104 aa22.91■■□□□ 1.26
SMC4-226ENST00000497311 CHRNA5P30532 468 aa22.91■■□□□ 1.26
SMC4-226ENST00000497311 EIF5P55010 431 aaKnown RBP22.91■■□□□ 1.26
SMC4-226ENST00000497311 ARFGEF1Q9Y6D6 1849 aa22.9■■□□□ 1.26
SMC4-226ENST00000497311 SERPINB2P05120 415 aa22.89■■□□□ 1.25
SMC4-226ENST00000497311 RTF1Q92541 710 aaKnown RBP22.89■■□□□ 1.25
SMC4-226ENST00000497311 AFDNP55196 1824 aaKnown RBP22.88■■□□□ 1.25
SMC4-226ENST00000497311 ZNF330Q9Y3S2 320 aaPredicted RBP22.88■■□□□ 1.25
SMC4-226ENST00000497311 KCNQ3O43525 872 aa22.86■■□□□ 1.25
SMC4-226ENST00000497311 IL6STP40189 918 aaPredicted RBP22.86■■□□□ 1.25
SMC4-226ENST00000497311 BICDL1Q6ZP65 573 aa22.86■■□□□ 1.25
SMC4-226ENST00000497311 NPM2Q86SE8 214 aaKnown RBP22.86■■□□□ 1.25
SMC4-226ENST00000497311 NRXN2Q9P2S2 1712 aa22.85■■□□□ 1.25
SMC4-226ENST00000497311 KIF3CO14782 793 aa22.85■■□□□ 1.25
SMC4-226ENST00000497311 C9orf131Q5VYM1 1079 aa22.85■■□□□ 1.25
SMC4-226ENST00000497311 MCM10Q7L590 875 aa22.85■■□□□ 1.25
SMC4-226ENST00000497311 A1BGP04217 495 aa22.84■■□□□ 1.25
SMC4-226ENST00000497311 TBC1D2BQ9UPU7 963 aa22.84■■□□□ 1.25
SMC4-226ENST00000497311 HTATSF1O43719 755 aaKnown RBP22.83■■□□□ 1.25
SMC4-226ENST00000497311 TBC1D9BQ66K14 1250 aa22.83■■□□□ 1.25
SMC4-226ENST00000497311 NEFMP07197 916 aa22.81■■□□□ 1.24
SMC4-226ENST00000497311 DCTN1Q14203 1278 aa22.81■■□□□ 1.24
SMC4-226ENST00000497311 USP16Q9Y5T5 823 aa22.81■■□□□ 1.24
SMC4-226ENST00000497311 H0YIN7 160 aa22.8■■□□□ 1.24
SMC4-226ENST00000497311 SNRPA1P09661 255 aaKnown RBP22.8■■□□□ 1.24
SMC4-226ENST00000497311 HSPA6P17066 643 aa22.8■■□□□ 1.24
SMC4-226ENST00000497311 C2CD5Q86YS7 1000 aa22.8■■□□□ 1.24
SMC4-226ENST00000497311 RNF181Q9P0P0 153 aa22.8■■□□□ 1.24
SMC4-226ENST00000497311 CARMIL3Q8ND23 1372 aa22.79■■□□□ 1.24
SMC4-226ENST00000497311 SCN7AQ01118 1682 aa22.79■■□□□ 1.24
SMC4-226ENST00000497311 TTLL6Q8N841 843 aa22.79■■□□□ 1.24
SMC4-226ENST00000497311 CAMTA2O94983 1202 aa22.78■■□□□ 1.24
SMC4-226ENST00000497311 DZIP3Q86Y13 1208 aaKnown RBP22.78■■□□□ 1.24
SMC4-226ENST00000497311 CEP350Q5VT06 3117 aa22.78■■□□□ 1.24
SMC4-226ENST00000497311 PRAMEF22A3QJZ6 481 aa22.77■■□□□ 1.24
SMC4-226ENST00000497311 TAF7Q15545 349 aaPredicted RBP22.77■■□□□ 1.24
SMC4-226ENST00000497311 SETDB2Q96T68 719 aa22.77■■□□□ 1.24
SMC4-226ENST00000497311 NMRK2Q9NPI5 230 aa22.77■■□□□ 1.24
SMC4-226ENST00000497311 DLEC1Q9Y238 1755 aa22.76■■□□□ 1.23
SMC4-226ENST00000497311 TOMM70O94826 608 aa22.76■■□□□ 1.23
SMC4-226ENST00000497311 PDE6BP35913 854 aa22.76■■□□□ 1.23
SMC4-226ENST00000497311 PIP4K2AP48426 406 aaPredicted RBP22.76■■□□□ 1.23
SMC4-226ENST00000497311 PRR5LQ6MZQ0 368 aa22.76■■□□□ 1.23
SMC4-226ENST00000497311 BRIP1Q9BX63 1249 aa22.76■■□□□ 1.23
SMC4-226ENST00000497311 PDZRN3Q9UPQ7 1066 aa22.76■■□□□ 1.23
SMC4-226ENST00000497311 SBF1O95248 1867 aa22.75■■□□□ 1.23
SMC4-226ENST00000497311 NPHP1O15259 732 aa22.74■■□□□ 1.23
SMC4-226ENST00000497311 RASSF7Q02833 373 aa22.74■■□□□ 1.23
SMC4-226ENST00000497311 CCDC24Q8N4L8 307 aa22.74■■□□□ 1.23
SMC4-226ENST00000497311 KDM2BQ8NHM5 1336 aa22.74■■□□□ 1.23
SMC4-226ENST00000497311 CNBD1Q8NA66 436 aa22.73■■□□□ 1.23
SMC4-226ENST00000497311 ZNF622Q969S3 477 aaKnown RBP eCLIP22.73■■□□□ 1.23
SMC4-226ENST00000497311 LMNB1P20700 586 aa22.72■■□□□ 1.23
SMC4-226ENST00000497311 CLEC4GQ6UXB4 293 aa22.72■■□□□ 1.23
SMC4-226ENST00000497311 PLEKHF1Q96S99 279 aa22.72■■□□□ 1.23
SMC4-226ENST00000497311 PNNQ9H307 717 aaKnown RBP22.72■■□□□ 1.23
SMC4-226ENST00000497311 MIS18AQ9NYP9 233 aa22.72■■□□□ 1.23
SMC4-226ENST00000497311 ANKRD31Q8N7Z5 1873 aa22.72■■□□□ 1.23
SMC4-226ENST00000497311 BCORQ6W2J9 1755 aa22.71■■□□□ 1.23
SMC4-226ENST00000497311 ST5P78524 1137 aa22.71■■□□□ 1.23
SMC4-226ENST00000497311 C16orf71Q8IYS4 520 aaPredicted RBP22.71■■□□□ 1.23
SMC4-226ENST00000497311 PNISRQ8TF01 805 aaKnown RBP22.71■■□□□ 1.23
SMC4-226ENST00000497311 ZNF652Q9Y2D9 606 aa22.71■■□□□ 1.23
SMC4-226ENST00000497311 NFE2L2Q16236 605 aa22.7■■□□□ 1.22
SMC4-226ENST00000497311 DLG5Q8TDM6 1919 aa22.69■■□□□ 1.22
SMC4-226ENST00000497311 ZC3H4Q9UPT8 1303 aaKnown RBP22.69■■□□□ 1.22
SMC4-226ENST00000497311 NBPF26B4DH59 902 aa22.69■■□□□ 1.22
SMC4-226ENST00000497311 NBPF10Q6P3W6 841 aaKnown RBP22.69■■□□□ 1.22
SMC4-226ENST00000497311 NBPF15Q8N660 670 aa22.69■■□□□ 1.22
SMC4-226ENST00000497311 MAPK8IP3Q9UPT6 1336 aa22.68■■□□□ 1.22
SMC4-226ENST00000497311 RBM46Q8TBY0 533 aaKnown RBP22.68■■□□□ 1.22
SMC4-226ENST00000497311 RRAGCQ9HB90 399 aa22.68■■□□□ 1.22
SMC4-226ENST00000497311 NFKBIEO00221 500 aa22.67■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms