RNA–Protein interactions for RNA: ENST00000493553.1

PRPF3-206, Transcript of pre-mRNA processing factor 3, humanhuman

TSL 2

Gene PRPF3, Length 516 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF3-206ENST00000493553 FAM160A2Q8N612 972 aaPredicted RBP13.09□□□□□ -0.31
PRPF3-206ENST00000493553 NUDT16Q96DE0 195 aaKnown RBP13.09□□□□□ -0.31
PRPF3-206ENST00000493553 ZNF521Q96K83 1311 aa13.09□□□□□ -0.31
PRPF3-206ENST00000493553 MSS51Q4VC12 460 aa13.08□□□□□ -0.32
PRPF3-206ENST00000493553 C3P01024 1663 aa13.08□□□□□ -0.32
PRPF3-206ENST00000493553 CPSF1Q10570 1443 aaKnown RBP13.07□□□□□ -0.32
PRPF3-206ENST00000493553 PPEF1O14829 653 aaPredicted RBP13.07□□□□□ -0.32
PRPF3-206ENST00000493553 LTKP29376 864 aa13.07□□□□□ -0.32
PRPF3-206ENST00000493553 CEBPAP49715 358 aaPredicted RBP13.07□□□□□ -0.32
PRPF3-206ENST00000493553 RRP1P56182 461 aaKnown RBP13.07□□□□□ -0.32
PRPF3-206ENST00000493553 WDR63Q8IWG1 891 aa13.07□□□□□ -0.32
PRPF3-206ENST00000493553 HLA-CQ95604 372 aa13.07□□□□□ -0.32
PRPF3-206ENST00000493553 ADGRB2O60241 1585 aa13.07□□□□□ -0.32
PRPF3-206ENST00000493553 PPIP5K1Q6PFW1 1433 aa13.06□□□□□ -0.32
PRPF3-206ENST00000493553 CD163L1Q9NR16 1453 aa13.06□□□□□ -0.32
PRPF3-206ENST00000493553 PLEKHG3A1L390 1219 aa13.06□□□□□ -0.32
PRPF3-206ENST00000493553 NEFMP07197 916 aa13.06□□□□□ -0.32
PRPF3-206ENST00000493553 PDE4DQ08499 809 aa13.06□□□□□ -0.32
PRPF3-206ENST00000493553 ANKLE2Q86XL3 938 aa13.06□□□□□ -0.32
PRPF3-206ENST00000493553 APAF1O14727 1248 aa13.05□□□□□ -0.32
PRPF3-206ENST00000493553 SLFN5Q08AF3 891 aa13.05□□□□□ -0.32
PRPF3-206ENST00000493553 SPIRE2Q8WWL2 714 aa13.05□□□□□ -0.32
PRPF3-206ENST00000493553 EMID1Q96A84 441 aaPredicted RBP13.05□□□□□ -0.32
PRPF3-206ENST00000493553 CDC42BPGQ6DT37 1551 aa13.05□□□□□ -0.32
PRPF3-206ENST00000493553 AATKQ6ZMQ8 1374 aa13.05□□□□□ -0.32
PRPF3-206ENST00000493553 PLEKHH1Q9ULM0 1364 aa13.05□□□□□ -0.32
PRPF3-206ENST00000493553 SLC19A1P41440 591 aa13.04□□□□□ -0.32
PRPF3-206ENST00000493553 TNNT2P45379 298 aaPredicted RBP13.04□□□□□ -0.32
PRPF3-206ENST00000493553 TRMT2AQ8IZ69 625 aaKnown RBP13.04□□□□□ -0.32
PRPF3-206ENST00000493553 BEGAINQ9BUH8 593 aa13.04□□□□□ -0.32
PRPF3-206ENST00000493553 GGNBP2Q9H3C7 697 aa13.04□□□□□ -0.32
PRPF3-206ENST00000493553 AMOTL2Q9Y2J4 779 aa13.04□□□□□ -0.32
PRPF3-206ENST00000493553 PNPLA6Q8IY17 1366 aa13.04□□□□□ -0.32
PRPF3-206ENST00000493553 ROBO2Q9HCK4 1378 aa13.04□□□□□ -0.32
PRPF3-206ENST00000493553 DIAPH1O60610 1272 aaKnown RBP13.03□□□□□ -0.32
PRPF3-206ENST00000493553 U2AF1L5P0DN76 240 aaPredicted RBP13.03□□□□□ -0.32
PRPF3-206ENST00000493553 U2AF1Q01081 240 aaKnown RBP eCLIP13.03□□□□□ -0.32
PRPF3-206ENST00000493553 COG3Q96JB2 828 aa13.03□□□□□ -0.32
PRPF3-206ENST00000493553 USB1Q9BQ65 265 aaKnown RBP13.03□□□□□ -0.32
PRPF3-206ENST00000493553 MYH16Q9H6N6 1097 aa13.03□□□□□ -0.32
PRPF3-206ENST00000493553 SETD1BQ9UPS6 1966 aaKnown RBP13.03□□□□□ -0.32
PRPF3-206ENST00000493553 ANKRD26Q9UPS8 1709 aa13.02□□□□□ -0.32
PRPF3-206ENST00000493553 CT47B1P0C2W7 299 aaPredicted RBP13.02□□□□□ -0.33
PRPF3-206ENST00000493553 MS4A1P11836 297 aa13.02□□□□□ -0.33
PRPF3-206ENST00000493553 DUSP27Q5VZP5 1158 aa13.02□□□□□ -0.33
PRPF3-206ENST00000493553 MAPK8IP3Q9UPT6 1336 aa13.02□□□□□ -0.33
PRPF3-206ENST00000493553 ANKARQ7Z5J8 1434 aa13.02□□□□□ -0.33
PRPF3-206ENST00000493553 CEP170BQ9Y4F5 1589 aaPredicted RBP13.02□□□□□ -0.33
PRPF3-206ENST00000493553 GUCA2AQ02747 115 aa13.01□□□□□ -0.33
PRPF3-206ENST00000493553 CCDC136Q96JN2 1154 aa13.01□□□□□ -0.33
PRPF3-206ENST00000493553 PRDM9Q9NQV7 894 aa13.01□□□□□ -0.33
PRPF3-206ENST00000493553 TTC21AQ8NDW8 1320 aa13.01□□□□□ -0.33
PRPF3-206ENST00000493553 NKTRP30414 1462 aaKnown RBP13□□□□□ -0.33
PRPF3-206ENST00000493553 CALD1Q05682 793 aaKnown RBP13□□□□□ -0.33
PRPF3-206ENST00000493553 AAMPQ13685 434 aa13□□□□□ -0.33
PRPF3-206ENST00000493553 WWC1Q8IX03 1113 aa13□□□□□ -0.33
PRPF3-206ENST00000493553 CCDC146Q8IYE0 955 aa13□□□□□ -0.33
PRPF3-206ENST00000493553 TCP11L2Q8N4U5 519 aa13□□□□□ -0.33
PRPF3-206ENST00000493553 SLC26A8Q96RN1 970 aa13□□□□□ -0.33
PRPF3-206ENST00000493553 IL16Q14005 1332 aa12.99□□□□□ -0.33
PRPF3-206ENST00000493553 FDX1P10109 184 aa12.99□□□□□ -0.33
PRPF3-206ENST00000493553 MMP16P51512 607 aa12.99□□□□□ -0.33
PRPF3-206ENST00000493553 IRX6P78412 446 aaPredicted RBP12.99□□□□□ -0.33
PRPF3-206ENST00000493553 LAPTM4AQ15012 233 aa12.99□□□□□ -0.33
PRPF3-206ENST00000493553 DIXDC1Q155Q3 683 aa12.99□□□□□ -0.33
PRPF3-206ENST00000493553 PLA2G2CQ5R387 149 aa12.99□□□□□ -0.33
PRPF3-206ENST00000493553 LIAT1Q6ZQX7 453 aa12.99□□□□□ -0.33
PRPF3-206ENST00000493553 SPRYD7Q5W111 196 aa12.98□□□□□ -0.33
PRPF3-206ENST00000493553 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12.98□□□□□ -0.33
PRPF3-206ENST00000493553 FCF1Q9Y324 198 aaKnown RBP12.98□□□□□ -0.33
PRPF3-206ENST00000493553 ADAMTSL3P82987 1691 aa12.97□□□□□ -0.33
PRPF3-206ENST00000493553 U2SURPO15042 1029 aaKnown RBP12.97□□□□□ -0.33
PRPF3-206ENST00000493553 GJA5P36382 358 aa12.97□□□□□ -0.33
PRPF3-206ENST00000493553 TBC1D2Q9BYX2 928 aa12.97□□□□□ -0.33
PRPF3-206ENST00000493553 PCDHGC3Q9UN70 934 aa12.97□□□□□ -0.33
PRPF3-206ENST00000493553 KIF20BQ96Q89 1820 aa12.97□□□□□ -0.33
PRPF3-206ENST00000493553 CDK12Q9NYV4 1490 aaPredicted RBP12.97□□□□□ -0.33
PRPF3-206ENST00000493553 ZNF142P52746 1687 aaPredicted RBP12.96□□□□□ -0.33
PRPF3-206ENST00000493553 MOXD2PA6NHM9 499 aa12.96□□□□□ -0.33
PRPF3-206ENST00000493553 DXOO77932 396 aaKnown RBP12.96□□□□□ -0.33
PRPF3-206ENST00000493553 POLKQ9UBT6 870 aa12.96□□□□□ -0.33
PRPF3-206ENST00000493553 COL3A1P02461 1466 aaPredicted RBP12.96□□□□□ -0.34
PRPF3-206ENST00000493553 IQSEC2Q5JU85 1478 aa12.96□□□□□ -0.34
PRPF3-206ENST00000493553 PTPRUQ92729 1446 aa12.96□□□□□ -0.34
PRPF3-206ENST00000493553 TTC21BQ7Z4L5 1316 aa12.95□□□□□ -0.34
PRPF3-206ENST00000493553 NDUFV2P19404 249 aa12.95□□□□□ -0.34
PRPF3-206ENST00000493553 LMOD3Q0VAK6 560 aa12.95□□□□□ -0.34
PRPF3-206ENST00000493553 ZNF598Q86UK7 904 aaKnown RBP12.95□□□□□ -0.34
PRPF3-206ENST00000493553 SHPRHQ149N8 1683 aa12.95□□□□□ -0.34
PRPF3-206ENST00000493553 USP6P35125 1406 aa12.95□□□□□ -0.34
PRPF3-206ENST00000493553 ACEP12821 1306 aa12.94□□□□□ -0.34
PRPF3-206ENST00000493553 PRR36Q9H6K5 1346 aa12.94□□□□□ -0.34
PRPF3-206ENST00000493553 RIMS1Q86UR5 1692 aaKnown RBP12.94□□□□□ -0.34
PRPF3-206ENST00000493553 GFRA3O60609 400 aa12.94□□□□□ -0.34
PRPF3-206ENST00000493553 RPIAP49247 311 aa12.94□□□□□ -0.34
PRPF3-206ENST00000493553 PDE3AQ14432 1141 aa12.94□□□□□ -0.34
PRPF3-206ENST00000493553 RETREG3Q86VR2 466 aa12.94□□□□□ -0.34
PRPF3-206ENST00000493553 MON2Q7Z3U7 1717 aa12.93□□□□□ -0.34
PRPF3-206ENST00000493553 NGDNQ8NEJ9 315 aaKnown RBP12.93□□□□□ -0.34
PRPF3-206ENST00000493553 SYMPKQ92797 1274 aaKnown RBP12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms