RNA–Protein interactions for RNA: ENST00000493256.1

LYSMD4-208, Transcript of LysM domain containing 4, humanhuman

TSL 3

Gene LYSMD4, Length 880 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LYSMD4-208ENST00000493256 BRCA1P38398 1863 aaKnown RBP29.7■■■□□ 2.35
LYSMD4-208ENST00000493256 NUDCQ9Y266 331 aa29.7■■■□□ 2.35
LYSMD4-208ENST00000493256 BCS1LQ9Y276 419 aa29.7■■■□□ 2.35
LYSMD4-208ENST00000493256 CEMIPQ8WUJ3 1361 aa29.68■■■□□ 2.34
LYSMD4-208ENST00000493256 POLRMTO00411 1230 aaKnown RBP29.68■■■□□ 2.34
LYSMD4-208ENST00000493256 TM4SF1P30408 202 aa29.68■■■□□ 2.34
LYSMD4-208ENST00000493256 ZNF790Q6PG37 636 aa29.68■■■□□ 2.34
LYSMD4-208ENST00000493256 ZNF496Q96IT1 587 aaPredicted RBP29.68■■■□□ 2.34
LYSMD4-208ENST00000493256 U2AF1L5P0DN76 240 aaPredicted RBP29.67■■■□□ 2.34
LYSMD4-208ENST00000493256 U2AF1Q01081 240 aaKnown RBP eCLIP29.67■■■□□ 2.34
LYSMD4-208ENST00000493256 NARFQ9UHQ1 456 aa29.67■■■□□ 2.34
LYSMD4-208ENST00000493256 KCNA3P22001 575 aa29.66■■■□□ 2.34
LYSMD4-208ENST00000493256 HEG1Q9ULI3 1381 aa29.65■■■□□ 2.34
LYSMD4-208ENST00000493256 STARD3NLO95772 234 aa29.65■■■□□ 2.34
LYSMD4-208ENST00000493256 CANXP27824 592 aaKnown RBP29.65■■■□□ 2.34
LYSMD4-208ENST00000493256 FCHSD2O94868 740 aa29.64■■■□□ 2.34
LYSMD4-208ENST00000493256 BCL2L12Q9HB09 334 aa29.64■■■□□ 2.34
LYSMD4-208ENST00000493256 GPBP1L1Q9HC44 474 aaPredicted RBP29.64■■■□□ 2.34
LYSMD4-208ENST00000493256 SENP3-EIF4A1A0A087X0R7 540 aa29.63■■■□□ 2.33
LYSMD4-208ENST00000493256 NFIXQ14938 502 aa29.63■■■□□ 2.33
LYSMD4-208ENST00000493256 ZNF526Q8TF50 670 aaPredicted RBP29.63■■■□□ 2.33
LYSMD4-208ENST00000493256 EIF5P55010 431 aaKnown RBP29.61■■■□□ 2.33
LYSMD4-208ENST00000493256 AFDNP55196 1824 aaKnown RBP29.61■■■□□ 2.33
LYSMD4-208ENST00000493256 ARFGEF1Q9Y6D6 1849 aa29.61■■■□□ 2.33
LYSMD4-208ENST00000493256 ARHGAP27Q6ZUM4 889 aa29.6■■■□□ 2.33
LYSMD4-208ENST00000493256 FMNL2Q96PY5 1086 aa29.6■■■□□ 2.33
LYSMD4-208ENST00000493256 TEX13AQ9BXU3 409 aaPredicted RBP29.6■■■□□ 2.33
LYSMD4-208ENST00000493256 PIM2Q9P1W9 311 aa29.6■■■□□ 2.33
LYSMD4-208ENST00000493256 BTBD11A6QL63 1104 aa29.59■■■□□ 2.33
LYSMD4-208ENST00000493256 KCNQ3O43525 872 aa29.59■■■□□ 2.33
LYSMD4-208ENST00000493256 CHRNA5P30532 468 aa29.59■■■□□ 2.33
LYSMD4-208ENST00000493256 NRXN2Q9P2S2 1712 aa29.59■■■□□ 2.33
LYSMD4-208ENST00000493256 MCM10Q7L590 875 aa29.57■■■□□ 2.32
LYSMD4-208ENST00000493256 A0A087WZG4 1122 aa29.56■■■□□ 2.32
LYSMD4-208ENST00000493256 DALRD3Q5D0E6 543 aaKnown RBP29.56■■■□□ 2.32
LYSMD4-208ENST00000493256 RTF1Q92541 710 aaKnown RBP29.56■■■□□ 2.32
LYSMD4-208ENST00000493256 SERPINB2P05120 415 aa29.54■■■□□ 2.32
LYSMD4-208ENST00000493256 SCN7AQ01118 1682 aa29.53■■■□□ 2.32
LYSMD4-208ENST00000493256 A1BGP04217 495 aa29.53■■■□□ 2.32
LYSMD4-208ENST00000493256 ZNF330Q9Y3S2 320 aaPredicted RBP29.53■■■□□ 2.32
LYSMD4-208ENST00000493256 IL6STP40189 918 aaPredicted RBP29.52■■■□□ 2.32
LYSMD4-208ENST00000493256 DCTN1Q14203 1278 aa29.52■■■□□ 2.32
LYSMD4-208ENST00000493256 BICDL1Q6ZP65 573 aa29.51■■■□□ 2.31
LYSMD4-208ENST00000493256 TBC1D2BQ9UPU7 963 aa29.5■■■□□ 2.31
LYSMD4-208ENST00000493256 HTATSF1O43719 755 aaKnown RBP29.49■■■□□ 2.31
LYSMD4-208ENST00000493256 TBC1D9BQ66K14 1250 aa29.49■■■□□ 2.31
LYSMD4-208ENST00000493256 USP16Q9Y5T5 823 aa29.49■■■□□ 2.31
LYSMD4-208ENST00000493256 CARMIL3Q8ND23 1372 aa29.49■■■□□ 2.31
LYSMD4-208ENST00000493256 PRAMEF22A3QJZ6 481 aa29.48■■■□□ 2.31
LYSMD4-208ENST00000493256 DLEC1Q9Y238 1755 aa29.47■■■□□ 2.31
LYSMD4-208ENST00000493256 C9orf131Q5VYM1 1079 aa29.47■■■□□ 2.31
LYSMD4-208ENST00000493256 KIF3CO14782 793 aa29.46■■■□□ 2.31
LYSMD4-208ENST00000493256 CAMTA2O94983 1202 aa29.45■■■□□ 2.31
LYSMD4-208ENST00000493256 DLG5Q8TDM6 1919 aa29.44■■■□□ 2.3
LYSMD4-208ENST00000493256 SNRPA1P09661 255 aaKnown RBP29.44■■■□□ 2.3
LYSMD4-208ENST00000493256 PIP4K2AP48426 406 aaPredicted RBP29.44■■■□□ 2.3
LYSMD4-208ENST00000493256 NPM2Q86SE8 214 aaKnown RBP29.44■■■□□ 2.3
LYSMD4-208ENST00000493256 CEP350Q5VT06 3117 aa29.44■■■□□ 2.3
LYSMD4-208ENST00000493256 C2CD5Q86YS7 1000 aa29.43■■■□□ 2.3
LYSMD4-208ENST00000493256 PLEKHF1Q96S99 279 aa29.43■■■□□ 2.3
LYSMD4-208ENST00000493256 BCORQ6W2J9 1755 aa29.43■■■□□ 2.3
LYSMD4-208ENST00000493256 ANKRD31Q8N7Z5 1873 aa29.42■■■□□ 2.3
LYSMD4-208ENST00000493256 NEFMP07197 916 aa29.42■■■□□ 2.3
LYSMD4-208ENST00000493256 TAF7Q15545 349 aaPredicted RBP29.42■■■□□ 2.3
LYSMD4-208ENST00000493256 DZIP3Q86Y13 1208 aaKnown RBP29.42■■■□□ 2.3
LYSMD4-208ENST00000493256 SBF1O95248 1867 aa29.4■■■□□ 2.3
LYSMD4-208ENST00000493256 RNF181Q9P0P0 153 aa29.4■■■□□ 2.3
LYSMD4-208ENST00000493256 H0YIN7 160 aa29.39■■■□□ 2.3
LYSMD4-208ENST00000493256 PRR5LQ6MZQ0 368 aa29.39■■■□□ 2.3
LYSMD4-208ENST00000493256 TTLL6Q8N841 843 aa29.39■■■□□ 2.3
LYSMD4-208ENST00000493256 MIS18AQ9NYP9 233 aa29.39■■■□□ 2.3
LYSMD4-208ENST00000493256 CCDC24Q8N4L8 307 aa29.38■■■□□ 2.29
LYSMD4-208ENST00000493256 SETDB2Q96T68 719 aa29.38■■■□□ 2.29
LYSMD4-208ENST00000493256 RASSF7Q02833 373 aa29.37■■■□□ 2.29
LYSMD4-208ENST00000493256 NFE2L2Q16236 605 aa29.37■■■□□ 2.29
LYSMD4-208ENST00000493256 BRIP1Q9BX63 1249 aa29.37■■■□□ 2.29
LYSMD4-208ENST00000493256 NMRK2Q9NPI5 230 aa29.37■■■□□ 2.29
LYSMD4-208ENST00000493256 NBPF26B4DH59 902 aa29.36■■■□□ 2.29
LYSMD4-208ENST00000493256 NBPF10Q6P3W6 841 aaKnown RBP29.36■■■□□ 2.29
LYSMD4-208ENST00000493256 NBPF15Q8N660 670 aa29.36■■■□□ 2.29
LYSMD4-208ENST00000493256 COL11A2P13942 1736 aaPredicted RBP29.36■■■□□ 2.29
LYSMD4-208ENST00000493256 KDM3BQ7LBC6 1761 aa29.35■■■□□ 2.29
LYSMD4-208ENST00000493256 HSPA6P17066 643 aa29.35■■■□□ 2.29
LYSMD4-208ENST00000493256 PDE6BP35913 854 aa29.34■■■□□ 2.29
LYSMD4-208ENST00000493256 CNBD1Q8NA66 436 aa29.34■■■□□ 2.29
LYSMD4-208ENST00000493256 LAMB4A4D0S4 1761 aa29.34■■■□□ 2.29
LYSMD4-208ENST00000493256 RALBP1Q15311 655 aa29.33■■■□□ 2.29
LYSMD4-208ENST00000493256 THUMPD2Q9BTF0 503 aaKnown RBP29.33■■■□□ 2.29
LYSMD4-208ENST00000493256 MAPK8IP3Q9UPT6 1336 aa29.32■■■□□ 2.28
LYSMD4-208ENST00000493256 CLEC4GQ6UXB4 293 aa29.32■■■□□ 2.28
LYSMD4-208ENST00000493256 PNISRQ8TF01 805 aaKnown RBP29.32■■■□□ 2.28
LYSMD4-208ENST00000493256 ZNF622Q969S3 477 aaKnown RBP eCLIP29.32■■■□□ 2.28
LYSMD4-208ENST00000493256 PNNQ9H307 717 aaKnown RBP29.32■■■□□ 2.28
LYSMD4-208ENST00000493256 PDZRN3Q9UPQ7 1066 aa29.32■■■□□ 2.28
LYSMD4-208ENST00000493256 NPHP1O15259 732 aa29.31■■■□□ 2.28
LYSMD4-208ENST00000493256 PRELPP51888 382 aa29.3■■■□□ 2.28
LYSMD4-208ENST00000493256 ZNF652Q9Y2D9 606 aa29.3■■■□□ 2.28
LYSMD4-208ENST00000493256 TOMM70O94826 608 aa29.29■■■□□ 2.28
LYSMD4-208ENST00000493256 ST5P78524 1137 aa29.29■■■□□ 2.28
LYSMD4-208ENST00000493256 DDX10Q13206 875 aaKnown RBP29.29■■■□□ 2.28
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms