RNA–Protein interactions for RNA: ENST00000491128.5

SMPD4-219, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 1 (best)

Gene SMPD4, Length 2,570 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-219ENST00000491128 SLIT2O94813 1529 aa17.54■□□□□ 0.4
SMPD4-219ENST00000491128 A1BGP04217 495 aa17.54■□□□□ 0.4
SMPD4-219ENST00000491128 MAP3K2Q9Y2U5 619 aa17.54■□□□□ 0.4
SMPD4-219ENST00000491128 SIPA1L3O60292 1781 aaPredicted RBP17.54■□□□□ 0.4
SMPD4-219ENST00000491128 BCL9LQ86UU0 1499 aa17.54■□□□□ 0.4
SMPD4-219ENST00000491128 SOS1Q07889 1333 aaPredicted RBP17.53■□□□□ 0.4
SMPD4-219ENST00000491128 ZNF330Q9Y3S2 320 aaPredicted RBP17.53■□□□□ 0.4
SMPD4-219ENST00000491128 EP400Q96L91 3159 aa17.53■□□□□ 0.4
SMPD4-219ENST00000491128 APBB1O00213 710 aa17.53■□□□□ 0.4
SMPD4-219ENST00000491128 SHANK3Q9BYB0 1731 aa17.53■□□□□ 0.4
SMPD4-219ENST00000491128 CCT4P50991 539 aaKnown RBP17.52■□□□□ 0.4
SMPD4-219ENST00000491128 AAMPQ13685 434 aa17.52■□□□□ 0.4
SMPD4-219ENST00000491128 COPS6Q7L5N1 327 aa17.52■□□□□ 0.4
SMPD4-219ENST00000491128 XAGE3Q8WTP9 111 aa17.52■□□□□ 0.4
SMPD4-219ENST00000491128 ADCY9O60503 1353 aa17.52■□□□□ 0.4
SMPD4-219ENST00000491128 MRC1P22897 1456 aa17.52■□□□□ 0.39
SMPD4-219ENST00000491128 CWF19L2Q2TBE0 894 aaKnown RBP17.52■□□□□ 0.39
SMPD4-219ENST00000491128 DDX21Q9NR30 783 aaKnown RBP eCLIP17.52■□□□□ 0.39
SMPD4-219ENST00000491128 ATG3Q9NT62 314 aa17.52■□□□□ 0.39
SMPD4-219ENST00000491128 DNAAF4Q8WXU2 420 aa17.51■□□□□ 0.39
SMPD4-219ENST00000491128 RBM19Q9Y4C8 960 aaKnown RBP17.51■□□□□ 0.39
SMPD4-219ENST00000491128 KCNQ2O43526 872 aa17.51■□□□□ 0.39
SMPD4-219ENST00000491128 HDAC1Q13547 482 aaPredicted RBP17.51■□□□□ 0.39
SMPD4-219ENST00000491128 NBPF26B4DH59 902 aa17.5■□□□□ 0.39
SMPD4-219ENST00000491128 NBPF14Q5TI25 921 aa17.5■□□□□ 0.39
SMPD4-219ENST00000491128 NBPF10Q6P3W6 841 aaKnown RBP17.5■□□□□ 0.39
SMPD4-219ENST00000491128 NBPF15Q8N660 670 aa17.5■□□□□ 0.39
SMPD4-219ENST00000491128 NBPF7P0C2Y1 421 aaPredicted RBP17.5■□□□□ 0.39
SMPD4-219ENST00000491128 FNBP4Q8N3X1 1017 aaPredicted RBP17.5■□□□□ 0.39
SMPD4-219ENST00000491128 USP44Q9H0E7 712 aa17.5■□□□□ 0.39
SMPD4-219ENST00000491128 JARID2Q92833 1246 aaPredicted RBP17.49■□□□□ 0.39
SMPD4-219ENST00000491128 HYPKQ9NX55 129 aa17.49■□□□□ 0.39
SMPD4-219ENST00000491128 THRAP3Q9Y2W1 955 aaKnown RBP17.49■□□□□ 0.39
SMPD4-219ENST00000491128 PLEKHG2Q9H7P9 1386 aa17.49■□□□□ 0.39
SMPD4-219ENST00000491128 BEND3Q5T5X7 828 aa17.49■□□□□ 0.39
SMPD4-219ENST00000491128 CEP85Q6P2H3 762 aa17.49■□□□□ 0.39
SMPD4-219ENST00000491128 PTF1AQ7RTS3 328 aa17.49■□□□□ 0.39
SMPD4-219ENST00000491128 DNAJC10Q8IXB1 793 aa17.49■□□□□ 0.39
SMPD4-219ENST00000491128 LNPKQ9C0E8 428 aa17.49■□□□□ 0.39
SMPD4-219ENST00000491128 SRCIN1Q9C0H9 1055 aa17.49■□□□□ 0.39
SMPD4-219ENST00000491128 SPATA31A6Q5VVP1 1343 aa17.49■□□□□ 0.39
SMPD4-219ENST00000491128 VPS72Q15906 364 aa17.48■□□□□ 0.39
SMPD4-219ENST00000491128 RIC3Q7Z5B4 369 aa17.48■□□□□ 0.39
SMPD4-219ENST00000491128 SLC4A9Q96Q91 983 aa17.48■□□□□ 0.39
SMPD4-219ENST00000491128 ARXQ96QS3 562 aa17.48■□□□□ 0.39
SMPD4-219ENST00000491128 LRRFIP2Q9Y608 721 aaKnown RBP17.48■□□□□ 0.39
SMPD4-219ENST00000491128 TOGARAM1Q9Y4F4 1720 aa17.48■□□□□ 0.39
SMPD4-219ENST00000491128 C5P01031 1676 aa17.48■□□□□ 0.39
SMPD4-219ENST00000491128 NRAPQ86VF7 1730 aa17.48■□□□□ 0.39
SMPD4-219ENST00000491128 AFF2P51816 1311 aa17.48■□□□□ 0.39
SMPD4-219ENST00000491128 ANKRD45Q5TZF3 282 aa17.47■□□□□ 0.39
SMPD4-219ENST00000491128 KSR2Q6VAB6 950 aa17.47■□□□□ 0.39
SMPD4-219ENST00000491128 LRP10Q7Z4F1 713 aa17.47■□□□□ 0.39
SMPD4-219ENST00000491128 TNS2Q63HR2 1409 aa17.47■□□□□ 0.39
SMPD4-219ENST00000491128 CHMP4BQ9H444 224 aaKnown RBP17.46■□□□□ 0.39
SMPD4-219ENST00000491128 PDE4AP27815 886 aa17.46■□□□□ 0.39
SMPD4-219ENST00000491128 KCNQ4P56696 695 aa17.46■□□□□ 0.39
SMPD4-219ENST00000491128 BARGINQ6ZT62 677 aa17.46■□□□□ 0.39
SMPD4-219ENST00000491128 TTLL7Q6ZT98 887 aa17.46■□□□□ 0.39
SMPD4-219ENST00000491128 PNMA6EA0A0J9YXQ4 647 aa17.45■□□□□ 0.38
SMPD4-219ENST00000491128 ATP5J2-PTCD1G3V325 749 aa17.45■□□□□ 0.38
SMPD4-219ENST00000491128 SMC5Q8IY18 1101 aa17.45■□□□□ 0.38
SMPD4-219ENST00000491128 GNAI2P04899 355 aa17.45■□□□□ 0.38
SMPD4-219ENST00000491128 MYD88Q99836 296 aa17.45■□□□□ 0.38
SMPD4-219ENST00000491128 CDCA7Q9BWT1 371 aaPredicted RBP17.45■□□□□ 0.38
SMPD4-219ENST00000491128 ATP10DQ9P241 1426 aa17.45■□□□□ 0.38
SMPD4-219ENST00000491128 KCPQ6ZWJ8 1503 aa17.44■□□□□ 0.38
SMPD4-219ENST00000491128 UBTFL1P0CB47 393 aaPredicted RBP17.44■□□□□ 0.38
SMPD4-219ENST00000491128 ANKRD44Q8N8A2 993 aa17.44■□□□□ 0.38
SMPD4-219ENST00000491128 BCL9O00512 1426 aa17.44■□□□□ 0.38
SMPD4-219ENST00000491128 RTL5Q5HYW3 569 aaPredicted RBP17.44■□□□□ 0.38
SMPD4-219ENST00000491128 ANKRD13DQ6ZTN6 518 aa17.44■□□□□ 0.38
SMPD4-219ENST00000491128 CHMP4AQ9BY43 222 aa17.44■□□□□ 0.38
SMPD4-219ENST00000491128 ZBTB3Q9H5J0 574 aa17.44■□□□□ 0.38
SMPD4-219ENST00000491128 SMARCA5O60264 1052 aaPredicted RBP17.43■□□□□ 0.38
SMPD4-219ENST00000491128 IGKV5-2P06315 115 aa17.43■□□□□ 0.38
SMPD4-219ENST00000491128 DDX58O95786 925 aaKnown RBP17.42■□□□□ 0.38
SMPD4-219ENST00000491128 C9orf78Q9NZ63 289 aaPredicted RBP17.42■□□□□ 0.38
SMPD4-219ENST00000491128 EXOC6BQ9Y2D4 811 aa17.42■□□□□ 0.38
SMPD4-219ENST00000491128 GNAI3P08754 354 aa17.42■□□□□ 0.38
SMPD4-219ENST00000491128 C16orf71Q8IYS4 520 aaPredicted RBP17.42■□□□□ 0.38
SMPD4-219ENST00000491128 GLI3P10071 1580 aa17.42■□□□□ 0.38
SMPD4-219ENST00000491128 GJD4Q96KN9 370 aaPredicted RBP17.41■□□□□ 0.38
SMPD4-219ENST00000491128 NUCB1Q02818 461 aa17.41■□□□□ 0.38
SMPD4-219ENST00000491128 CHD1LQ86WJ1 897 aa17.41■□□□□ 0.38
SMPD4-219ENST00000491128 RPAP2Q8IXW5 612 aaPredicted RBP17.41■□□□□ 0.38
SMPD4-219ENST00000491128 NPM2Q86SE8 214 aaKnown RBP17.39■□□□□ 0.37
SMPD4-219ENST00000491128 OTUD7AQ8TE49 926 aaPredicted RBP17.39■□□□□ 0.37
SMPD4-219ENST00000491128 DCTPP1Q9H773 170 aa17.39■□□□□ 0.37
SMPD4-219ENST00000491128 QTRT2Q9H974 415 aaKnown RBP17.39■□□□□ 0.37
SMPD4-219ENST00000491128 PPP1R42Q7Z4L9 355 aa17.38■□□□□ 0.37
SMPD4-219ENST00000491128 BACH2Q9BYV9 841 aa17.38■□□□□ 0.37
SMPD4-219ENST00000491128 NWD2Q9ULI1 1742 aa17.38■□□□□ 0.37
SMPD4-219ENST00000491128 SMIM5Q71RC9 77 aa17.38■□□□□ 0.37
SMPD4-219ENST00000491128 LINS1Q8NG48 757 aa17.38■□□□□ 0.37
SMPD4-219ENST00000491128 GCC1Q96CN9 775 aa17.38■□□□□ 0.37
SMPD4-219ENST00000491128 METTL22Q9BUU2 404 aaPredicted RBP17.38■□□□□ 0.37
SMPD4-219ENST00000491128 ZBTB1Q9Y2K1 713 aa17.38■□□□□ 0.37
SMPD4-219ENST00000491128 NEURL1BA8MQ27 555 aa17.37■□□□□ 0.37
SMPD4-219ENST00000491128 ATP6V1AP38606 617 aa17.37■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 69.8 ms