RNA–Protein interactions for RNA: ENST00000489111.1

USP11-211, Transcript of ubiquitin specific peptidase 11, humanhuman

TSL 3

Gene USP11, Length 516 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP11-211ENST00000489111 ACSBG1Q96GR2 724 aa12.68□□□□□ -0.38
USP11-211ENST00000489111 DDX21Q9NR30 783 aaKnown RBP eCLIP12.68□□□□□ -0.38
USP11-211ENST00000489111 ASAP1Q9ULH1 1129 aa12.68□□□□□ -0.38
USP11-211ENST00000489111 PAPPAQ13219 1627 aa12.68□□□□□ -0.38
USP11-211ENST00000489111 ERBB4Q15303 1308 aa12.67□□□□□ -0.38
USP11-211ENST00000489111 DDX58O95786 925 aaKnown RBP12.67□□□□□ -0.38
USP11-211ENST00000489111 CCT4P50991 539 aaKnown RBP12.67□□□□□ -0.38
USP11-211ENST00000489111 INTS3Q68E01 1043 aaKnown RBP12.67□□□□□ -0.38
USP11-211ENST00000489111 SLC4A10Q6U841 1118 aa12.67□□□□□ -0.38
USP11-211ENST00000489111 SEPT12Q8IYM1 358 aa12.67□□□□□ -0.38
USP11-211ENST00000489111 RBM42Q9BTD8 480 aaKnown RBP12.67□□□□□ -0.38
USP11-211ENST00000489111 ATG3Q9NT62 314 aa12.67□□□□□ -0.38
USP11-211ENST00000489111 F6X3S4 739 aa12.66□□□□□ -0.38
USP11-211ENST00000489111 ANXA1P04083 346 aa12.66□□□□□ -0.38
USP11-211ENST00000489111 PROSER3Q2NL68 480 aa12.66□□□□□ -0.38
USP11-211ENST00000489111 VSIG10Q8N0Z9 540 aa12.66□□□□□ -0.38
USP11-211ENST00000489111 TEX13AQ9BXU3 409 aaPredicted RBP12.66□□□□□ -0.38
USP11-211ENST00000489111 PHAXQ9H814 394 aaKnown RBP12.66□□□□□ -0.38
USP11-211ENST00000489111 PXDNLA1KZ92 1463 aa12.65□□□□□ -0.38
USP11-211ENST00000489111 ONECUT3O60422 494 aaPredicted RBP12.65□□□□□ -0.38
USP11-211ENST00000489111 MYL6BP14649 208 aa12.65□□□□□ -0.38
USP11-211ENST00000489111 SMARCC1Q92922 1105 aaPredicted RBP12.65□□□□□ -0.38
USP11-211ENST00000489111 USP16Q9Y5T5 823 aa12.65□□□□□ -0.38
USP11-211ENST00000489111 DOT1LQ8TEK3 1739 aa12.65□□□□□ -0.38
USP11-211ENST00000489111 VIRMAQ69YN4 1812 aaKnown RBP12.65□□□□□ -0.39
USP11-211ENST00000489111 STARD3NLO95772 234 aa12.64□□□□□ -0.39
USP11-211ENST00000489111 RBM6P78332 1123 aaKnown RBP12.63□□□□□ -0.39
USP11-211ENST00000489111 AIMP1Q12904 312 aaKnown RBP12.63□□□□□ -0.39
USP11-211ENST00000489111 PDIA6Q15084 440 aa12.63□□□□□ -0.39
USP11-211ENST00000489111 CENPQQ7L2Z9 268 aaPredicted RBP12.63□□□□□ -0.39
USP11-211ENST00000489111 XAGE3Q8WTP9 111 aa12.63□□□□□ -0.39
USP11-211ENST00000489111 DNAAF4Q8WXU2 420 aa12.63□□□□□ -0.39
USP11-211ENST00000489111 ZBTB40Q9NUA8 1239 aa12.63□□□□□ -0.39
USP11-211ENST00000489111 PALLDQ8WX93 1383 aa12.63□□□□□ -0.39
USP11-211ENST00000489111 C5P01031 1676 aa12.63□□□□□ -0.39
USP11-211ENST00000489111 UBR2Q8IWV8 1755 aa12.63□□□□□ -0.39
USP11-211ENST00000489111 PI4KAP2A4QPH2 592 aa12.62□□□□□ -0.39
USP11-211ENST00000489111 ZBTB7BO15156 539 aaPredicted RBP12.62□□□□□ -0.39
USP11-211ENST00000489111 KSR2Q6VAB6 950 aa12.62□□□□□ -0.39
USP11-211ENST00000489111 DNAJC10Q8IXB1 793 aa12.62□□□□□ -0.39
USP11-211ENST00000489111 PI4KAP1Q8N8J0 262 aa12.62□□□□□ -0.39
USP11-211ENST00000489111 LAMB4A4D0S4 1761 aa12.61□□□□□ -0.39
USP11-211ENST00000489111 ADCY9O60503 1353 aa12.61□□□□□ -0.39
USP11-211ENST00000489111 KCNQ2O43526 872 aa12.61□□□□□ -0.39
USP11-211ENST00000489111 PIP4K2AP48426 406 aaPredicted RBP12.61□□□□□ -0.39
USP11-211ENST00000489111 RIC3Q7Z5B4 369 aa12.61□□□□□ -0.39
USP11-211ENST00000489111 SRCIN1Q9C0H9 1055 aa12.61□□□□□ -0.39
USP11-211ENST00000489111 RWDD1Q9H446 243 aaPredicted RBP12.61□□□□□ -0.39
USP11-211ENST00000489111 MAP3K2Q9Y2U5 619 aa12.61□□□□□ -0.39
USP11-211ENST00000489111 A1BGP04217 495 aa12.6□□□□□ -0.39
USP11-211ENST00000489111 GNAI3P08754 354 aa12.6□□□□□ -0.39
USP11-211ENST00000489111 NEXNQ0ZGT2 675 aa12.6□□□□□ -0.39
USP11-211ENST00000489111 COPS6Q7L5N1 327 aa12.6□□□□□ -0.39
USP11-211ENST00000489111 KRT27Q7Z3Y8 459 aa12.6□□□□□ -0.39
USP11-211ENST00000489111 PCDHB15Q9Y5E8 787 aa12.6□□□□□ -0.39
USP11-211ENST00000489111 ATP10DQ9P241 1426 aa12.6□□□□□ -0.39
USP11-211ENST00000489111 KDM2BQ8NHM5 1336 aa12.6□□□□□ -0.39
USP11-211ENST00000489111 LOC102724428A0A0B4J2F2 783 aa12.59□□□□□ -0.39
USP11-211ENST00000489111 NBPF26B4DH59 902 aa12.59□□□□□ -0.39
USP11-211ENST00000489111 SIK1P57059 783 aa12.59□□□□□ -0.39
USP11-211ENST00000489111 FAM182BQ5T319 152 aa12.59□□□□□ -0.39
USP11-211ENST00000489111 NBPF14Q5TI25 921 aa12.59□□□□□ -0.39
USP11-211ENST00000489111 NBPF10Q6P3W6 841 aaKnown RBP12.59□□□□□ -0.39
USP11-211ENST00000489111 NPM2Q86SE8 214 aaKnown RBP12.59□□□□□ -0.39
USP11-211ENST00000489111 NBPF15Q8N660 670 aa12.59□□□□□ -0.39
USP11-211ENST00000489111 MEIS3Q99687 375 aa12.59□□□□□ -0.39
USP11-211ENST00000489111 C1orf115Q9H7X2 142 aa12.59□□□□□ -0.39
USP11-211ENST00000489111 ZNF330Q9Y3S2 320 aaPredicted RBP12.59□□□□□ -0.39
USP11-211ENST00000489111 ALDH1L1O75891 902 aa12.58□□□□□ -0.4
USP11-211ENST00000489111 CYP19A1P11511 503 aaPredicted RBP12.58□□□□□ -0.4
USP11-211ENST00000489111 RXRBP28702 533 aa12.58□□□□□ -0.4
USP11-211ENST00000489111 ATP6V1AP38606 617 aa12.58□□□□□ -0.4
USP11-211ENST00000489111 BEND3Q5T5X7 828 aa12.58□□□□□ -0.4
USP11-211ENST00000489111 KIF6Q6ZMV9 814 aa12.58□□□□□ -0.4
USP11-211ENST00000489111 FAM196AQ6ZSG2 479 aa12.58□□□□□ -0.4
USP11-211ENST00000489111 ANKRD13DQ6ZTN6 518 aa12.58□□□□□ -0.4
USP11-211ENST00000489111 LRP10Q7Z4F1 713 aa12.58□□□□□ -0.4
USP11-211ENST00000489111 SLC4A9Q96Q91 983 aa12.58□□□□□ -0.4
USP11-211ENST00000489111 GNAI2P04899 355 aa12.57□□□□□ -0.4
USP11-211ENST00000489111 UBTFL1P0CB47 393 aaPredicted RBP12.57□□□□□ -0.4
USP11-211ENST00000489111 HDAC1Q13547 482 aaPredicted RBP12.57□□□□□ -0.4
USP11-211ENST00000489111 LINS1Q8NG48 757 aa12.57□□□□□ -0.4
USP11-211ENST00000489111 PLBD2Q8NHP8 589 aa12.57□□□□□ -0.4
USP11-211ENST00000489111 ITGB4P16144 1822 aa12.57□□□□□ -0.4
USP11-211ENST00000489111 IGHDP01880 384 aa12.56□□□□□ -0.4
USP11-211ENST00000489111 MYD88Q99836 296 aa12.56□□□□□ -0.4
USP11-211ENST00000489111 METTL22Q9BUU2 404 aaPredicted RBP12.56□□□□□ -0.4
USP11-211ENST00000489111 CCDC87Q9NVE4 849 aa12.56□□□□□ -0.4
USP11-211ENST00000489111 NHSQ6T4R5 1651 aa12.56□□□□□ -0.4
USP11-211ENST00000489111 CRKLP46109 303 aaKnown RBP12.55□□□□□ -0.4
USP11-211ENST00000489111 TTLL7Q6ZT98 887 aa12.55□□□□□ -0.4
USP11-211ENST00000489111 BCL11BQ9C0K0 894 aaPredicted RBP12.55□□□□□ -0.4
USP11-211ENST00000489111 C9orf78Q9NZ63 289 aaPredicted RBP12.55□□□□□ -0.4
USP11-211ENST00000489111 HDAC5Q9UQL6 1122 aa12.55□□□□□ -0.4
USP11-211ENST00000489111 ZBTB1Q9Y2K1 713 aa12.55□□□□□ -0.4
USP11-211ENST00000489111 HMMRO75330 724 aa12.54□□□□□ -0.4
USP11-211ENST00000489111 IL6STP40189 918 aaPredicted RBP12.54□□□□□ -0.4
USP11-211ENST00000489111 ITPK1Q13572 414 aa12.54□□□□□ -0.4
USP11-211ENST00000489111 CWF19L2Q2TBE0 894 aaKnown RBP12.54□□□□□ -0.4
USP11-211ENST00000489111 PTF1AQ7RTS3 328 aa12.54□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms