RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 RBM27Q9P2N5 1060 aaKnown RBP21.86■■□□□ 1.09
VIM-206ENST00000487938 TUBGCP6Q96RT7 1819 aa21.86■■□□□ 1.09
VIM-206ENST00000487938 CEMIPQ8WUJ3 1361 aa21.85■■□□□ 1.09
VIM-206ENST00000487938 RHPN1Q8TCX5 695 aa21.85■■□□□ 1.09
VIM-206ENST00000487938 POLA2Q14181 598 aa21.85■■□□□ 1.09
VIM-206ENST00000487938 ESCO1Q5FWF5 840 aa21.85■■□□□ 1.09
VIM-206ENST00000487938 MPRIPQ6WCQ1 1025 aa21.85■■□□□ 1.09
VIM-206ENST00000487938 PXDNLA1KZ92 1463 aa21.84■■□□□ 1.09
VIM-206ENST00000487938 RAB11FIP3O75154 756 aa21.84■■□□□ 1.09
VIM-206ENST00000487938 MCM2P49736 904 aa21.83■■□□□ 1.09
VIM-206ENST00000487938 ZNF445P59923 1031 aa21.83■■□□□ 1.09
VIM-206ENST00000487938 ANAPC15P60006 121 aa21.83■■□□□ 1.09
VIM-206ENST00000487938 BEND3Q5T5X7 828 aa21.83■■□□□ 1.09
VIM-206ENST00000487938 DNAAF4Q8WXU2 420 aa21.83■■□□□ 1.09
VIM-206ENST00000487938 BTBD11A6QL63 1104 aa21.83■■□□□ 1.09
VIM-206ENST00000487938 LTN1O94822 1766 aa21.83■■□□□ 1.08
VIM-206ENST00000487938 CHD2O14647 1828 aaKnown RBP21.82■■□□□ 1.08
VIM-206ENST00000487938 TEFQ10587 303 aa21.82■■□□□ 1.08
VIM-206ENST00000487938 ZNF142P52746 1687 aaPredicted RBP21.82■■□□□ 1.08
VIM-206ENST00000487938 CUL4AQ13619 759 aa21.82■■□□□ 1.08
VIM-206ENST00000487938 ZNF530Q6P9A1 599 aaPredicted RBP21.82■■□□□ 1.08
VIM-206ENST00000487938 PI4K2BQ8TCG2 481 aa21.82■■□□□ 1.08
VIM-206ENST00000487938 NSFL1CQ9UNZ2 370 aaKnown RBP21.82■■□□□ 1.08
VIM-206ENST00000487938 AOX1Q06278 1338 aa21.81■■□□□ 1.08
VIM-206ENST00000487938 CCDC173Q0VFZ6 552 aa21.8■■□□□ 1.08
VIM-206ENST00000487938 KIF1BPQ96EK5 621 aa21.8■■□□□ 1.08
VIM-206ENST00000487938 PRIM1P49642 420 aaKnown RBP21.8■■□□□ 1.08
VIM-206ENST00000487938 XPCQ01831 940 aaPredicted RBP21.8■■□□□ 1.08
VIM-206ENST00000487938 NAP1L5Q96NT1 182 aaPredicted RBP21.8■■□□□ 1.08
VIM-206ENST00000487938 RBSNQ9H1K0 784 aa21.8■■□□□ 1.08
VIM-206ENST00000487938 USP54Q70EL1 1684 aa21.79■■□□□ 1.08
VIM-206ENST00000487938 BRD1O95696 1058 aa21.79■■□□□ 1.08
VIM-206ENST00000487938 ANP32BQ92688 251 aaKnown RBP21.79■■□□□ 1.08
VIM-206ENST00000487938 FOXD4L6Q3SYB3 417 aaPredicted RBP21.78■■□□□ 1.08
VIM-206ENST00000487938 AKAP4Q5JQC9 854 aa21.78■■□□□ 1.08
VIM-206ENST00000487938 FOXD4L3Q6VB84 417 aaPredicted RBP21.78■■□□□ 1.08
VIM-206ENST00000487938 PPP1R9BQ96SB3 815 aa21.78■■□□□ 1.08
VIM-206ENST00000487938 N4BP2Q86UW6 1770 aaPredicted RBP21.78■■□□□ 1.08
VIM-206ENST00000487938 HSPA4P34932 840 aa21.78■■□□□ 1.08
VIM-206ENST00000487938 PLEKHO1Q53GL0 409 aaPredicted RBP21.78■■□□□ 1.08
VIM-206ENST00000487938 TMEM63CQ9P1W3 806 aa21.78■■□□□ 1.08
VIM-206ENST00000487938 ADAMTSL3P82987 1691 aa21.77■■□□□ 1.08
VIM-206ENST00000487938 HOXB7P09629 217 aa21.77■■□□□ 1.08
VIM-206ENST00000487938 OS9Q13438 667 aaPredicted RBP21.77■■□□□ 1.08
VIM-206ENST00000487938 KCNH5Q8NCM2 988 aa21.77■■□□□ 1.08
VIM-206ENST00000487938 INTS4Q96HW7 963 aaKnown RBP21.77■■□□□ 1.08
VIM-206ENST00000487938 RGPD2P0DJD1 1756 aa21.77■■□□□ 1.08
VIM-206ENST00000487938 ADCY9O60503 1353 aa21.76■■□□□ 1.07
VIM-206ENST00000487938 ADGRL3Q9HAR2 1447 aa21.76■■□□□ 1.07
VIM-206ENST00000487938 LMOD2Q6P5Q4 547 aa21.76■■□□□ 1.07
VIM-206ENST00000487938 SGSM2O43147 1006 aa21.76■■□□□ 1.07
VIM-206ENST00000487938 NFAT5O94916 1531 aa21.76■■□□□ 1.07
VIM-206ENST00000487938 PRAMEF22A3QJZ6 481 aa21.75■■□□□ 1.07
VIM-206ENST00000487938 RNMTO43148 476 aaKnown RBP21.75■■□□□ 1.07
VIM-206ENST00000487938 PROSER3Q2NL68 480 aa21.75■■□□□ 1.07
VIM-206ENST00000487938 CWC27Q6UX04 472 aaKnown RBP21.75■■□□□ 1.07
VIM-206ENST00000487938 CNTROBQ8N137 903 aa21.75■■□□□ 1.07
VIM-206ENST00000487938 LARP6Q9BRS8 491 aaKnown RBP21.75■■□□□ 1.07
VIM-206ENST00000487938 MAP3K2Q9Y2U5 619 aa21.75■■□□□ 1.07
VIM-206ENST00000487938 SYCE3A1L190 88 aa21.75■■□□□ 1.07
VIM-206ENST00000487938 IL17RAQ96F46 866 aa21.75■■□□□ 1.07
VIM-206ENST00000487938 C1orf141Q5JVX7 400 aa21.74■■□□□ 1.07
VIM-206ENST00000487938 ORAI2Q96SN7 254 aa21.74■■□□□ 1.07
VIM-206ENST00000487938 DBF4Q9UBU7 674 aaPredicted RBP21.74■■□□□ 1.07
VIM-206ENST00000487938 SPG7Q9UQ90 795 aa21.74■■□□□ 1.07
VIM-206ENST00000487938 C9orf78Q9NZ63 289 aaPredicted RBP21.73■■□□□ 1.07
VIM-206ENST00000487938 SNX14Q9Y5W7 946 aa21.73■■□□□ 1.07
VIM-206ENST00000487938 NPHP4O75161 1426 aaPredicted RBP21.73■■□□□ 1.07
VIM-206ENST00000487938 GCP02774 474 aa21.73■■□□□ 1.07
VIM-206ENST00000487938 LSG1Q9H089 658 aaKnown RBP21.73■■□□□ 1.07
VIM-206ENST00000487938 MED1Q15648 1581 aaPredicted RBP21.73■■□□□ 1.07
VIM-206ENST00000487938 CWF19L2Q2TBE0 894 aaKnown RBP21.72■■□□□ 1.07
VIM-206ENST00000487938 RASEFQ8IZ41 740 aa21.72■■□□□ 1.07
VIM-206ENST00000487938 PA2G4Q9UQ80 394 aaKnown RBP21.72■■□□□ 1.07
VIM-206ENST00000487938 RAD50Q92878 1312 aa21.72■■□□□ 1.07
VIM-206ENST00000487938 HSP90AB4PQ58FF6 505 aa21.72■■□□□ 1.07
VIM-206ENST00000487938 CHMP4AQ9BY43 222 aa21.72■■□□□ 1.07
VIM-206ENST00000487938 GDPD2Q9HCC8 539 aa21.72■■□□□ 1.07
VIM-206ENST00000487938 KDM3BQ7LBC6 1761 aa21.71■■□□□ 1.07
VIM-206ENST00000487938 AMOTQ4VCS5 1084 aa21.71■■□□□ 1.07
VIM-206ENST00000487938 GIGYF1O75420 1035 aaPredicted RBP21.71■■□□□ 1.07
VIM-206ENST00000487938 LRSAM1Q6UWE0 723 aa21.71■■□□□ 1.07
VIM-206ENST00000487938 KIAA1211Q6ZU35 1233 aa21.71■■□□□ 1.07
VIM-206ENST00000487938 EPB41L2O43491 1005 aaKnown RBP21.7■■□□□ 1.06
VIM-206ENST00000487938 ARHGEF25Q86VW2 580 aa21.7■■□□□ 1.06
VIM-206ENST00000487938 ANKRD24Q8TF21 1146 aa21.7■■□□□ 1.06
VIM-206ENST00000487938 CPA1P15085 419 aa21.69■■□□□ 1.06
VIM-206ENST00000487938 KSR2Q6VAB6 950 aa21.69■■□□□ 1.06
VIM-206ENST00000487938 CLASRPQ8N2M8 674 aaKnown RBP21.69■■□□□ 1.06
VIM-206ENST00000487938 PXDNQ92626 1479 aa21.69■■□□□ 1.06
VIM-206ENST00000487938 GLRX3O76003 335 aaKnown RBP21.68■■□□□ 1.06
VIM-206ENST00000487938 MBD3O95983 291 aa21.68■■□□□ 1.06
VIM-206ENST00000487938 AK2P54819 239 aa21.68■■□□□ 1.06
VIM-206ENST00000487938 AIMP1Q12904 312 aaKnown RBP21.68■■□□□ 1.06
VIM-206ENST00000487938 AXIN2Q9Y2T1 843 aa21.68■■□□□ 1.06
VIM-206ENST00000487938 GADD45BO75293 160 aaPredicted RBP21.68■■□□□ 1.06
VIM-206ENST00000487938 TTC14Q96N46 770 aa21.67■■□□□ 1.06
VIM-206ENST00000487938 TTC41PQ6P2S7 1318 aa21.67■■□□□ 1.06
VIM-206ENST00000487938 MTX1Q13505 466 aa21.67■■□□□ 1.06
VIM-206ENST00000487938 DIAPH3Q9NSV4 1193 aa21.67■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms