RNA–Protein interactions for RNA: ENST00000483876.1

COL17A1-206, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 5

Gene COL17A1, Length 622 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-206ENST00000483876 PKD1L3Q7Z443 1732 aa6.99□□□□□ -1.29
COL17A1-206ENST00000483876 TMEM88BA6NKF7 163 aa6.99□□□□□ -1.29
COL17A1-206ENST00000483876 HTATSF1O43719 755 aaKnown RBP6.99□□□□□ -1.29
COL17A1-206ENST00000483876 AMPHP49418 695 aa6.99□□□□□ -1.29
COL17A1-206ENST00000483876 DEFB115Q30KQ5 88 aa6.99□□□□□ -1.29
COL17A1-206ENST00000483876 HSP90AB2PQ58FF8 381 aa6.99□□□□□ -1.29
COL17A1-206ENST00000483876 IP6K1Q92551 441 aa6.99□□□□□ -1.29
COL17A1-206ENST00000483876 CARD10Q9BWT7 1032 aa6.99□□□□□ -1.29
COL17A1-206ENST00000483876 TSKSQ9UJT2 592 aa6.99□□□□□ -1.29
COL17A1-206ENST00000483876 ZC3H4Q9UPT8 1303 aaKnown RBP6.99□□□□□ -1.29
COL17A1-206ENST00000483876 RTL1A6NKG5 1358 aa6.98□□□□□ -1.29
COL17A1-206ENST00000483876 KDRP35968 1356 aa6.98□□□□□ -1.29
COL17A1-206ENST00000483876 PIK3C2AO00443 1686 aa6.98□□□□□ -1.29
COL17A1-206ENST00000483876 ZNF853P0CG23 659 aa6.98□□□□□ -1.29
COL17A1-206ENST00000483876 CSB-PGBD3P0DP91 1061 aa6.98□□□□□ -1.29
COL17A1-206ENST00000483876 MS4A1P11836 297 aa6.98□□□□□ -1.29
COL17A1-206ENST00000483876 RARSP54136 660 aaKnown RBP6.98□□□□□ -1.29
COL17A1-206ENST00000483876 BRPF1P55201 1214 aaPredicted RBP6.98□□□□□ -1.29
COL17A1-206ENST00000483876 GNAI1P63096 354 aa6.98□□□□□ -1.29
COL17A1-206ENST00000483876 IRX6P78412 446 aaPredicted RBP6.98□□□□□ -1.29
COL17A1-206ENST00000483876 MAPK8IP2Q13387 824 aaPredicted RBP6.98□□□□□ -1.29
COL17A1-206ENST00000483876 SULT6B1Q6IMI4 303 aa6.98□□□□□ -1.29
COL17A1-206ENST00000483876 SMIM5Q71RC9 77 aa6.98□□□□□ -1.29
COL17A1-206ENST00000483876 IFT57Q9NWB7 429 aa6.98□□□□□ -1.29
COL17A1-206ENST00000483876 RASSF10A6NK89 507 aa6.97□□□□□ -1.29
COL17A1-206ENST00000483876 POTECB2RU33 542 aa6.97□□□□□ -1.29
COL17A1-206ENST00000483876 HMOX1P09601 288 aa6.97□□□□□ -1.29
COL17A1-206ENST00000483876 DPEP1P16444 411 aa6.97□□□□□ -1.29
COL17A1-206ENST00000483876 HOXC9P31274 260 aa6.97□□□□□ -1.29
COL17A1-206ENST00000483876 SYTL4Q96C24 671 aaPredicted RBP6.97□□□□□ -1.29
COL17A1-206ENST00000483876 CCDC136Q96JN2 1154 aa6.97□□□□□ -1.29
COL17A1-206ENST00000483876 EYA1Q99502 592 aa6.97□□□□□ -1.29
COL17A1-206ENST00000483876 PASKQ96RG2 1323 aa6.97□□□□□ -1.29
COL17A1-206ENST00000483876 WNK3Q9BYP7 1800 aa6.97□□□□□ -1.29
COL17A1-206ENST00000483876 ALDH1L2Q3SY69 923 aa6.96□□□□□ -1.3
COL17A1-206ENST00000483876 ARHGEF25Q86VW2 580 aa6.96□□□□□ -1.3
COL17A1-206ENST00000483876 GAS2L2Q8NHY3 880 aa6.96□□□□□ -1.3
COL17A1-206ENST00000483876 EXOC6Q8TAG9 804 aa6.96□□□□□ -1.3
COL17A1-206ENST00000483876 BABAM1Q9NWV8 329 aa6.96□□□□□ -1.3
COL17A1-206ENST00000483876 AXIN2Q9Y2T1 843 aa6.96□□□□□ -1.3
COL17A1-206ENST00000483876 VIRMAQ69YN4 1812 aaKnown RBP6.96□□□□□ -1.3
COL17A1-206ENST00000483876 FANCIQ9NVI1 1328 aa6.96□□□□□ -1.3
COL17A1-206ENST00000483876 COL18A1P39060 1754 aa6.95□□□□□ -1.3
COL17A1-206ENST00000483876 CHL1O00533 1208 aa6.95□□□□□ -1.3
COL17A1-206ENST00000483876 IPO8O15397 1037 aaKnown RBP6.95□□□□□ -1.3
COL17A1-206ENST00000483876 BCAR3O75815 825 aa6.95□□□□□ -1.3
COL17A1-206ENST00000483876 POTEIP0CG38 1075 aa6.95□□□□□ -1.3
COL17A1-206ENST00000483876 POTEJP0CG39 1038 aa6.95□□□□□ -1.3
COL17A1-206ENST00000483876 ARHGAP45Q92619 1136 aa6.95□□□□□ -1.3
COL17A1-206ENST00000483876 DCAF5Q96JK2 942 aa6.95□□□□□ -1.3
COL17A1-206ENST00000483876 ABCC6O95255 1503 aa6.95□□□□□ -1.3
COL17A1-206ENST00000483876 ERBB3P21860 1342 aa6.95□□□□□ -1.3
COL17A1-206ENST00000483876 PLIN1O60240 522 aa6.94□□□□□ -1.3
COL17A1-206ENST00000483876 PHF14O94880 888 aa6.94□□□□□ -1.3
COL17A1-206ENST00000483876 EXOSC9Q06265 439 aaKnown RBP6.94□□□□□ -1.3
COL17A1-206ENST00000483876 DALRD3Q5D0E6 543 aaKnown RBP6.94□□□□□ -1.3
COL17A1-206ENST00000483876 B4GALNT3Q6L9W6 998 aa6.94□□□□□ -1.3
COL17A1-206ENST00000483876 DPY19L2Q6NUT2 758 aa6.94□□□□□ -1.3
COL17A1-206ENST00000483876 AEBP1Q8IUX7 1158 aa6.94□□□□□ -1.3
COL17A1-206ENST00000483876 PIM2Q9P1W9 311 aa6.94□□□□□ -1.3
COL17A1-206ENST00000483876 SLIT3O75094 1523 aa6.93□□□□□ -1.3
COL17A1-206ENST00000483876 NFAT5O94916 1531 aa6.93□□□□□ -1.3
COL17A1-206ENST00000483876 VAMP4O75379 141 aa6.93□□□□□ -1.3
COL17A1-206ENST00000483876 MMP10P09238 476 aa6.93□□□□□ -1.3
COL17A1-206ENST00000483876 HMGB2P26583 209 aaKnown RBP6.93□□□□□ -1.3
COL17A1-206ENST00000483876 PRIM1P49642 420 aaKnown RBP6.93□□□□□ -1.3
COL17A1-206ENST00000483876 MNX1P50219 401 aaPredicted RBP6.93□□□□□ -1.3
COL17A1-206ENST00000483876 GRM1Q13255 1194 aa6.93□□□□□ -1.3
COL17A1-206ENST00000483876 MTHFSDQ2M296 383 aaKnown RBP6.93□□□□□ -1.3
COL17A1-206ENST00000483876 AMOTQ4VCS5 1084 aa6.93□□□□□ -1.3
COL17A1-206ENST00000483876 ZKSCAN2Q63HK3 967 aa6.93□□□□□ -1.3
COL17A1-206ENST00000483876 RTF1Q92541 710 aaKnown RBP6.93□□□□□ -1.3
COL17A1-206ENST00000483876 GPR101Q96P66 508 aaPredicted RBP6.93□□□□□ -1.3
COL17A1-206ENST00000483876 CRBNQ96SW2 442 aa6.93□□□□□ -1.3
COL17A1-206ENST00000483876 ABT1Q9ULW3 272 aaKnown RBP6.93□□□□□ -1.3
COL17A1-206ENST00000483876 SOS1Q07889 1333 aaPredicted RBP6.93□□□□□ -1.3
COL17A1-206ENST00000483876 GNAT3A8MTJ3 354 aa6.92□□□□□ -1.3
COL17A1-206ENST00000483876 SOX12O15370 315 aa6.92□□□□□ -1.3
COL17A1-206ENST00000483876 CA12O43570 354 aa6.92□□□□□ -1.3
COL17A1-206ENST00000483876 IL2RBP14784 551 aa6.92□□□□□ -1.3
COL17A1-206ENST00000483876 LMNB1P20700 586 aa6.92□□□□□ -1.3
COL17A1-206ENST00000483876 KCNA3P22001 575 aa6.92□□□□□ -1.3
COL17A1-206ENST00000483876 RASSF7Q02833 373 aa6.92□□□□□ -1.3
COL17A1-206ENST00000483876 C20orf194Q5TEA3 1177 aa6.92□□□□□ -1.3
COL17A1-206ENST00000483876 PAXIP1Q6ZW49 1069 aaPredicted RBP6.92□□□□□ -1.3
COL17A1-206ENST00000483876 TSR2Q969E8 191 aaKnown RBP6.92□□□□□ -1.3
COL17A1-206ENST00000483876 AK7Q96M32 723 aa6.92□□□□□ -1.3
COL17A1-206ENST00000483876 CHMP4AQ9BY43 222 aa6.92□□□□□ -1.3
COL17A1-206ENST00000483876 CHMP4BQ9H444 224 aaKnown RBP6.92□□□□□ -1.3
COL17A1-206ENST00000483876 MBIPQ9NS73 344 aa6.92□□□□□ -1.3
COL17A1-206ENST00000483876 N4BP2Q86UW6 1770 aaPredicted RBP6.92□□□□□ -1.3
COL17A1-206ENST00000483876 KIAA1551Q9HCM1 1747 aa6.91□□□□□ -1.3
COL17A1-206ENST00000483876 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP6.91□□□□□ -1.3
COL17A1-206ENST00000483876 ITGBL1O95965 494 aaPredicted RBP6.91□□□□□ -1.3
COL17A1-206ENST00000483876 ECE1P42892 770 aa6.91□□□□□ -1.3
COL17A1-206ENST00000483876 NBPF6Q5VWK0 638 aa6.91□□□□□ -1.3
COL17A1-206ENST00000483876 AMIGO3Q86WK7 504 aa6.91□□□□□ -1.3
COL17A1-206ENST00000483876 DDX54Q8TDD1 881 aaKnown RBP6.91□□□□□ -1.3
COL17A1-206ENST00000483876 SSH1Q8WYL5 1049 aa6.91□□□□□ -1.3
COL17A1-206ENST00000483876 CAPNS2Q96L46 248 aa6.91□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms