RNA–Protein interactions for RNA: ENST00000481708.1

SMC6-208, Transcript of structural maintenance of chromosomes 6, human

TSL 2

Gene SMC6, Length 3,897 nt, Biotype retained intron, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SMC6-208	ENST00000481708	ARHGAP33	O14559	1287 aa		4.86	□□□□□ -1.63
SMC6-208	ENST00000481708	ST18	O60284	1047 aa		4.86	□□□□□ -1.63
SMC6-208	ENST00000481708	NLGN1	Q8N2Q7	840 aa		4.86	□□□□□ -1.63
SMC6-208	ENST00000481708	MARVELD3	Q96A59	401 aa		4.86	□□□□□ -1.63
SMC6-208	ENST00000481708	CDCA7	Q9BWT1	371 aa	Predicted RBP	4.86	□□□□□ -1.63
SMC6-208	ENST00000481708	MYOM1	P52179	1685 aa		4.86	□□□□□ -1.63
SMC6-208	ENST00000481708	SCAPER	Q9BY12	1400 aa		4.86	□□□□□ -1.63
SMC6-208	ENST00000481708	ZC3H6	P61129	1189 aa	Known RBP	4.86	□□□□□ -1.63
SMC6-208	ENST00000481708	CRTC2	Q53ET0	693 aa	Predicted RBP	4.86	□□□□□ -1.63
SMC6-208	ENST00000481708	TUBGCP6	Q96RT7	1819 aa		4.86	□□□□□ -1.63
SMC6-208	ENST00000481708	PIK3R4	Q99570	1358 aa		4.86	□□□□□ -1.63
SMC6-208	ENST00000481708	POTEB3	A0JP26	581 aa		4.86	□□□□□ -1.63
SMC6-208	ENST00000481708	POTEB	Q6S5H4	581 aa		4.86	□□□□□ -1.63
SMC6-208	ENST00000481708	RNF19A	Q9NV58	838 aa		4.86	□□□□□ -1.63
SMC6-208	ENST00000481708	VAMP1	P23763	118 aa		4.85	□□□□□ -1.63
SMC6-208	ENST00000481708	LRRN4	Q8WUT4	740 aa		4.85	□□□□□ -1.63
SMC6-208	ENST00000481708	VPS9D1	Q9Y2B5	631 aa		4.85	□□□□□ -1.63
SMC6-208	ENST00000481708	LY75	O60449	1722 aa		4.85	□□□□□ -1.63
SMC6-208	ENST00000481708	SETD5	Q9C0A6	1442 aa		4.85	□□□□□ -1.63
SMC6-208	ENST00000481708	ERBB3	P21860	1342 aa		4.85	□□□□□ -1.63
SMC6-208	ENST00000481708	RAB11FIP3	O75154	756 aa		4.85	□□□□□ -1.63
SMC6-208	ENST00000481708	UBXN4	Q92575	508 aa		4.85	□□□□□ -1.63
SMC6-208	ENST00000481708	SLC4A5	Q9BY07	1137 aa		4.85	□□□□□ -1.63
SMC6-208	ENST00000481708	ANKRD62	A6NC57	917 aa		4.84	□□□□□ -1.63
SMC6-208	ENST00000481708	MARCH6	O60337	910 aa		4.84	□□□□□ -1.63
SMC6-208	ENST00000481708	FUT2	Q10981	343 aa		4.84	□□□□□ -1.63
SMC6-208	ENST00000481708	SAMD7	Q7Z3H4	446 aa		4.84	□□□□□ -1.63
SMC6-208	ENST00000481708	PIF1	Q9H611	641 aa		4.84	□□□□□ -1.63
SMC6-208	ENST00000481708	PTCH1	Q13635	1447 aa		4.84	□□□□□ -1.63
SMC6-208	ENST00000481708	FDX1	P10109	184 aa		4.84	□□□□□ -1.63
SMC6-208	ENST00000481708	HDLBP	Q00341	1268 aa	Known RBP	4.84	□□□□□ -1.63
SMC6-208	ENST00000481708	PRPF38B	Q5VTL8	546 aa	Known RBP	4.84	□□□□□ -1.63
SMC6-208	ENST00000481708	DNAJC2	Q99543	621 aa	Known RBP	4.84	□□□□□ -1.63
SMC6-208	ENST00000481708	BACH2	Q9BYV9	841 aa		4.84	□□□□□ -1.63
SMC6-208	ENST00000481708	NDUFB9	Q9Y6M9	179 aa		4.84	□□□□□ -1.63
SMC6-208	ENST00000481708	BHMG1	C9JSJ3	638 aa	Predicted RBP	4.84	□□□□□ -1.64
SMC6-208	ENST00000481708	FAM98C	Q17RN3	349 aa	Known RBP	4.84	□□□□□ -1.64
SMC6-208	ENST00000481708	SUGT1	Q9Y2Z0	365 aa		4.83	□□□□□ -1.64
SMC6-208	ENST00000481708	COL14A1	Q05707	1796 aa	Known RBP	4.83	□□□□□ -1.64
SMC6-208	ENST00000481708	NUTM2B	A6NNL0	878 aa	Predicted RBP	4.83	□□□□□ -1.64
SMC6-208	ENST00000481708	NUTM2E	B1AL46	878 aa	Predicted RBP	4.83	□□□□□ -1.64
SMC6-208	ENST00000481708	CFAP99	D6REC4	459 aa		4.83	□□□□□ -1.64
SMC6-208	ENST00000481708	NUTM2D	Q5VT03	806 aa	Predicted RBP	4.83	□□□□□ -1.64
SMC6-208	ENST00000481708	NUTM2A	Q8IVF1	878 aa	Predicted RBP	4.83	□□□□□ -1.64
SMC6-208	ENST00000481708	VTI1A	Q96AJ9	217 aa		4.83	□□□□□ -1.64
SMC6-208	ENST00000481708	KCNH8	Q96L42	1107 aa		4.83	□□□□□ -1.64
SMC6-208	ENST00000481708	SBNO2	Q9Y2G9	1366 aa		4.83	□□□□□ -1.64
SMC6-208	ENST00000481708	ELOA	Q14241	798 aa	Known RBP	4.83	□□□□□ -1.64
SMC6-208	ENST00000481708	SYMPK	Q92797	1274 aa	Known RBP	4.83	□□□□□ -1.64
SMC6-208	ENST00000481708	LNPK	Q9C0E8	428 aa		4.83	□□□□□ -1.64
SMC6-208	ENST00000481708	ZBTB3	Q9H5J0	574 aa		4.83	□□□□□ -1.64
SMC6-208	ENST00000481708	CLIP1	P30622	1438 aa		4.83	□□□□□ -1.64
SMC6-208	ENST00000481708	EMP3	P54852	163 aa		4.82	□□□□□ -1.64
SMC6-208	ENST00000481708	MARS	P56192	900 aa	Known RBP	4.82	□□□□□ -1.64
SMC6-208	ENST00000481708	USP46	P62068	366 aa		4.82	□□□□□ -1.64
SMC6-208	ENST00000481708	METTL16	Q86W50	562 aa	Known RBP	4.82	□□□□□ -1.64
SMC6-208	ENST00000481708	LARGE2	Q8N3Y3	721 aa		4.82	□□□□□ -1.64
SMC6-208	ENST00000481708	BRCA1	P38398	1863 aa	Known RBP	4.82	□□□□□ -1.64
SMC6-208	ENST00000481708	LHX8	Q68G74	356 aa		4.82	□□□□□ -1.64
SMC6-208	ENST00000481708	TINF2	Q9BSI4	451 aa		4.82	□□□□□ -1.64
SMC6-208	ENST00000481708	PXDN	Q92626	1479 aa		4.82	□□□□□ -1.64
SMC6-208	ENST00000481708	FAM205C	A6NFA0	338 aa		4.82	□□□□□ -1.64
SMC6-208	ENST00000481708	CFH	P08603	1231 aa		4.82	□□□□□ -1.64
SMC6-208	ENST00000481708	MRPL58	Q14197	206 aa	Known RBP	4.82	□□□□□ -1.64
SMC6-208	ENST00000481708	ZNF687	Q8N1G0	1237 aa		4.82	□□□□□ -1.64
SMC6-208	ENST00000481708	MICAL1	Q8TDZ2	1067 aa		4.82	□□□□□ -1.64
SMC6-208	ENST00000481708	MON2	Q7Z3U7	1717 aa		4.82	□□□□□ -1.64
SMC6-208	ENST00000481708	TSNAXIP1	Q2TAA8	658 aa		4.81	□□□□□ -1.64
SMC6-208	ENST00000481708	LCE2D	Q5TA82	110 aa	Predicted RBP	4.81	□□□□□ -1.64
SMC6-208	ENST00000481708	KLHL42	Q9P2K6	505 aa		4.81	□□□□□ -1.64
SMC6-208	ENST00000481708	NOVA2	Q9UNW9	492 aa	Known RBP	4.81	□□□□□ -1.64
SMC6-208	ENST00000481708	MTMR2	Q13614	643 aa		4.81	□□□□□ -1.64
SMC6-208	ENST00000481708	ADAMTS13	Q76LX8	1427 aa		4.81	□□□□□ -1.64
SMC6-208	ENST00000481708	ANKRD13A	Q8IZ07	590 aa		4.81	□□□□□ -1.64
SMC6-208	ENST00000481708	FAM174A	Q8TBP5	190 aa		4.81	□□□□□ -1.64
SMC6-208	ENST00000481708	DLEC1	Q9Y238	1755 aa		4.81	□□□□□ -1.64
SMC6-208	ENST00000481708	ATP9B	O43861	1147 aa		4.81	□□□□□ -1.64
SMC6-208	ENST00000481708	CAPN12	Q6ZSI9	719 aa		4.81	□□□□□ -1.64
SMC6-208	ENST00000481708	ZFR	Q96KR1	1074 aa	Known RBP	4.81	□□□□□ -1.64
SMC6-208	ENST00000481708	THSD7B	Q9C0I4	1608 aa		4.8	□□□□□ -1.64
SMC6-208	ENST00000481708	LOC102724159	A0A0B4J2E5	919 aa		4.8	□□□□□ -1.64
SMC6-208	ENST00000481708	PWP2	Q15269	919 aa	Known RBP	4.8	□□□□□ -1.64
SMC6-208	ENST00000481708	PIK3R5	Q8WYR1	880 aa		4.8	□□□□□ -1.64
SMC6-208	ENST00000481708	NHS	Q6T4R5	1651 aa		4.8	□□□□□ -1.64
SMC6-208	ENST00000481708	PBX2	P40425	430 aa		4.8	□□□□□ -1.64
SMC6-208	ENST00000481708	EGFLAM	Q63HQ2	1017 aa		4.8	□□□□□ -1.64
SMC6-208	ENST00000481708	WDR3	Q9UNX4	943 aa	Known RBP eCLIP	4.8	□□□□□ -1.64
SMC6-208	ENST00000481708	ADAMTS7	Q9UKP4	1686 aa		4.8	□□□□□ -1.64
SMC6-208	ENST00000481708	MYOM2	P54296	1465 aa		4.8	□□□□□ -1.64
SMC6-208	ENST00000481708	DEPDC4	Q8N2C3	294 aa		4.8	□□□□□ -1.64
SMC6-208	ENST00000481708	CCER1	Q8TC90	406 aa	Predicted RBP	4.8	□□□□□ -1.64
SMC6-208	ENST00000481708	HS3ST6	Q96QI5	342 aa		4.8	□□□□□ -1.64
SMC6-208	ENST00000481708	NPHP4	O75161	1426 aa	Predicted RBP	4.8	□□□□□ -1.64
SMC6-208	ENST00000481708	ARFGEF2	Q9Y6D5	1785 aa		4.8	□□□□□ -1.64
SMC6-208	ENST00000481708	PER1	O15534	1290 aa	Predicted RBP	4.79	□□□□□ -1.64
SMC6-208	ENST00000481708	RNF40	O75150	1001 aa		4.79	□□□□□ -1.64
SMC6-208	ENST00000481708	DHX38	Q92620	1227 aa	Known RBP	4.79	□□□□□ -1.64
SMC6-208	ENST00000481708	FAM161B	Q96MY7	647 aa		4.79	□□□□□ -1.64
SMC6-208	ENST00000481708	PPME1	Q9Y570	386 aa		4.79	□□□□□ -1.64
SMC6-208	ENST00000481708	ROCK1	Q13464	1354 aa		4.79	□□□□□ -1.64

Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms