RNA–Protein interactions for RNA: ENST00000481641.1

CLK1-211, Transcript of CDC like kinase 1, humanhuman

TSL 4

Gene CLK1, Length 690 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-211ENST00000481641 BCS1LQ9Y276 419 aa24.86■■□□□ 1.57
CLK1-211ENST00000481641 SIPA1L3O60292 1781 aaPredicted RBP24.85■■□□□ 1.57
CLK1-211ENST00000481641 GIGYF1O75420 1035 aaPredicted RBP24.85■■□□□ 1.57
CLK1-211ENST00000481641 CANXP27824 592 aaKnown RBP24.85■■□□□ 1.57
CLK1-211ENST00000481641 ZNF790Q6PG37 636 aa24.85■■□□□ 1.57
CLK1-211ENST00000481641 COL15A1P39059 1388 aa24.84■■□□□ 1.57
CLK1-211ENST00000481641 TM4SF1P30408 202 aa24.84■■□□□ 1.57
CLK1-211ENST00000481641 POLRMTO00411 1230 aaKnown RBP24.83■■□□□ 1.57
CLK1-211ENST00000481641 KCNQ3O43525 872 aa24.83■■□□□ 1.57
CLK1-211ENST00000481641 KCNA3P22001 575 aa24.83■■□□□ 1.57
CLK1-211ENST00000481641 NARFQ9UHQ1 456 aa24.83■■□□□ 1.57
CLK1-211ENST00000481641 CEMIPQ8WUJ3 1361 aa24.82■■□□□ 1.56
CLK1-211ENST00000481641 ZNF526Q8TF50 670 aaPredicted RBP24.82■■□□□ 1.56
CLK1-211ENST00000481641 ADCY9O60503 1353 aa24.81■■□□□ 1.56
CLK1-211ENST00000481641 HEG1Q9ULI3 1381 aa24.81■■□□□ 1.56
CLK1-211ENST00000481641 BCL2L12Q9HB09 334 aa24.81■■□□□ 1.56
CLK1-211ENST00000481641 FCHSD2O94868 740 aa24.8■■□□□ 1.56
CLK1-211ENST00000481641 STARD3NLO95772 234 aa24.8■■□□□ 1.56
CLK1-211ENST00000481641 NFIXQ14938 502 aa24.8■■□□□ 1.56
CLK1-211ENST00000481641 BRCA1P38398 1863 aaKnown RBP24.79■■□□□ 1.56
CLK1-211ENST00000481641 CHRNA5P30532 468 aa24.79■■□□□ 1.56
CLK1-211ENST00000481641 MCM10Q7L590 875 aa24.79■■□□□ 1.56
CLK1-211ENST00000481641 BTBD11A6QL63 1104 aa24.78■■□□□ 1.56
CLK1-211ENST00000481641 EIF5P55010 431 aaKnown RBP24.78■■□□□ 1.56
CLK1-211ENST00000481641 DCTN1Q14203 1278 aa24.78■■□□□ 1.56
CLK1-211ENST00000481641 ARHGAP27Q6ZUM4 889 aa24.78■■□□□ 1.56
CLK1-211ENST00000481641 FMNL2Q96PY5 1086 aa24.77■■□□□ 1.56
CLK1-211ENST00000481641 SENP3-EIF4A1A0A087X0R7 540 aa24.76■■□□□ 1.55
CLK1-211ENST00000481641 GPBP1L1Q9HC44 474 aaPredicted RBP24.76■■□□□ 1.55
CLK1-211ENST00000481641 ZNF330Q9Y3S2 320 aaPredicted RBP24.76■■□□□ 1.55
CLK1-211ENST00000481641 AFDNP55196 1824 aaKnown RBP24.76■■□□□ 1.55
CLK1-211ENST00000481641 A1BGP04217 495 aa24.75■■□□□ 1.55
CLK1-211ENST00000481641 RTF1Q92541 710 aaKnown RBP24.75■■□□□ 1.55
CLK1-211ENST00000481641 TEX13AQ9BXU3 409 aaPredicted RBP24.75■■□□□ 1.55
CLK1-211ENST00000481641 PIM2Q9P1W9 311 aa24.75■■□□□ 1.55
CLK1-211ENST00000481641 BICDL1Q6ZP65 573 aa24.74■■□□□ 1.55
CLK1-211ENST00000481641 PRAMEF22A3QJZ6 481 aa24.73■■□□□ 1.55
CLK1-211ENST00000481641 SERPINB2P05120 415 aa24.73■■□□□ 1.55
CLK1-211ENST00000481641 TBC1D2BQ9UPU7 963 aa24.73■■□□□ 1.55
CLK1-211ENST00000481641 A0A087WZG4 1122 aa24.72■■□□□ 1.55
CLK1-211ENST00000481641 USP16Q9Y5T5 823 aa24.72■■□□□ 1.55
CLK1-211ENST00000481641 PIP4K2AP48426 406 aaPredicted RBP24.71■■□□□ 1.55
CLK1-211ENST00000481641 DALRD3Q5D0E6 543 aaKnown RBP24.71■■□□□ 1.55
CLK1-211ENST00000481641 ARFGEF1Q9Y6D6 1849 aa24.7■■□□□ 1.55
CLK1-211ENST00000481641 NRXN2Q9P2S2 1712 aa24.7■■□□□ 1.54
CLK1-211ENST00000481641 TBC1D9BQ66K14 1250 aa24.7■■□□□ 1.54
CLK1-211ENST00000481641 IL6STP40189 918 aaPredicted RBP24.69■■□□□ 1.54
CLK1-211ENST00000481641 MIS18AQ9NYP9 233 aa24.68■■□□□ 1.54
CLK1-211ENST00000481641 CARMIL3Q8ND23 1372 aa24.67■■□□□ 1.54
CLK1-211ENST00000481641 HTATSF1O43719 755 aaKnown RBP24.67■■□□□ 1.54
CLK1-211ENST00000481641 CCDC24Q8N4L8 307 aa24.66■■□□□ 1.54
CLK1-211ENST00000481641 PLEKHF1Q96S99 279 aa24.66■■□□□ 1.54
CLK1-211ENST00000481641 DLG5Q8TDM6 1919 aa24.66■■□□□ 1.54
CLK1-211ENST00000481641 SCN7AQ01118 1682 aa24.66■■□□□ 1.54
CLK1-211ENST00000481641 CAMTA2O94983 1202 aa24.65■■□□□ 1.54
CLK1-211ENST00000481641 SNRPA1P09661 255 aaKnown RBP24.65■■□□□ 1.54
CLK1-211ENST00000481641 C9orf131Q5VYM1 1079 aa24.65■■□□□ 1.54
CLK1-211ENST00000481641 TAF7Q15545 349 aaPredicted RBP24.64■■□□□ 1.54
CLK1-211ENST00000481641 NPM2Q86SE8 214 aaKnown RBP24.64■■□□□ 1.54
CLK1-211ENST00000481641 C2CD5Q86YS7 1000 aa24.64■■□□□ 1.54
CLK1-211ENST00000481641 KIF3CO14782 793 aa24.63■■□□□ 1.53
CLK1-211ENST00000481641 NEFMP07197 916 aa24.63■■□□□ 1.53
CLK1-211ENST00000481641 DZIP3Q86Y13 1208 aaKnown RBP24.63■■□□□ 1.53
CLK1-211ENST00000481641 DDX10Q13206 875 aaKnown RBP24.62■■□□□ 1.53
CLK1-211ENST00000481641 THUMPD2Q9BTF0 503 aaKnown RBP24.62■■□□□ 1.53
CLK1-211ENST00000481641 ANKRD31Q8N7Z5 1873 aa24.6■■□□□ 1.53
CLK1-211ENST00000481641 NBPF26B4DH59 902 aa24.6■■□□□ 1.53
CLK1-211ENST00000481641 NFE2L2Q16236 605 aa24.6■■□□□ 1.53
CLK1-211ENST00000481641 PRR5LQ6MZQ0 368 aa24.6■■□□□ 1.53
CLK1-211ENST00000481641 NBPF10Q6P3W6 841 aaKnown RBP24.6■■□□□ 1.53
CLK1-211ENST00000481641 NBPF15Q8N660 670 aa24.6■■□□□ 1.53
CLK1-211ENST00000481641 DLEC1Q9Y238 1755 aa24.59■■□□□ 1.53
CLK1-211ENST00000481641 H0YIN7 160 aa24.59■■□□□ 1.53
CLK1-211ENST00000481641 RASSF7Q02833 373 aa24.59■■□□□ 1.53
CLK1-211ENST00000481641 SETDB2Q96T68 719 aa24.59■■□□□ 1.53
CLK1-211ENST00000481641 RNF181Q9P0P0 153 aa24.59■■□□□ 1.53
CLK1-211ENST00000481641 BCORQ6W2J9 1755 aa24.58■■□□□ 1.53
CLK1-211ENST00000481641 TTLL6Q8N841 843 aa24.58■■□□□ 1.53
CLK1-211ENST00000481641 SBF1O95248 1867 aa24.58■■□□□ 1.52
CLK1-211ENST00000481641 RALBP1Q15311 655 aa24.57■■□□□ 1.52
CLK1-211ENST00000481641 NMRK2Q9NPI5 230 aa24.57■■□□□ 1.52
CLK1-211ENST00000481641 ZNF622Q969S3 477 aaKnown RBP eCLIP24.56■■□□□ 1.522e-16■■■■□ 20.9
CLK1-211ENST00000481641 BRIP1Q9BX63 1249 aa24.56■■□□□ 1.52
CLK1-211ENST00000481641 MAPK8IP3Q9UPT6 1336 aa24.56■■□□□ 1.52
CLK1-211ENST00000481641 KDM3BQ7LBC6 1761 aa24.54■■□□□ 1.52
CLK1-211ENST00000481641 NPHP1O15259 732 aa24.54■■□□□ 1.52
CLK1-211ENST00000481641 PRELPP51888 382 aa24.54■■□□□ 1.52
CLK1-211ENST00000481641 CNBD1Q8NA66 436 aa24.54■■□□□ 1.52
CLK1-211ENST00000481641 PNNQ9H307 717 aaKnown RBP24.54■■□□□ 1.52
CLK1-211ENST00000481641 ZNF219Q9P2Y4 722 aaPredicted RBP24.54■■□□□ 1.52
CLK1-211ENST00000481641 CEP350Q5VT06 3117 aa24.54■■□□□ 1.52
CLK1-211ENST00000481641 COL11A2P13942 1736 aaPredicted RBP24.53■■□□□ 1.52
CLK1-211ENST00000481641 PDE6BP35913 854 aa24.53■■□□□ 1.52
CLK1-211ENST00000481641 PNISRQ8TF01 805 aaKnown RBP24.53■■□□□ 1.52
CLK1-211ENST00000481641 EIF4A1P60842 406 aaKnown RBP24.52■■□□□ 1.52
CLK1-211ENST00000481641 NGEFQ8N5V2 710 aa24.52■■□□□ 1.52
CLK1-211ENST00000481641 CLEC4GQ6UXB4 293 aa24.51■■□□□ 1.51
CLK1-211ENST00000481641 LAMB4A4D0S4 1761 aa24.51■■□□□ 1.51
CLK1-211ENST00000481641 HSPA6P17066 643 aa24.5■■□□□ 1.51
CLK1-211ENST00000481641 ST5P78524 1137 aa24.5■■□□□ 1.51
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms