RNA–Protein interactions for RNA: ENST00000481409.1

USP39-215, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-215ENST00000481409 BRWD3Q6RI45 1802 aa12.97□□□□□ -0.33
USP39-215ENST00000481409 KAT6BQ8WYB5 2073 aa12.97□□□□□ -0.33
USP39-215ENST00000481409 STARD3NLO95772 234 aa12.96□□□□□ -0.33
USP39-215ENST00000481409 SLC4A2P04920 1241 aa12.96□□□□□ -0.33
USP39-215ENST00000481409 BCL11BQ9C0K0 894 aaPredicted RBP12.96□□□□□ -0.33
USP39-215ENST00000481409 DDX21Q9NR30 783 aaKnown RBP eCLIP12.96□□□□□ -0.33
USP39-215ENST00000481409 ASAP1Q9ULH1 1129 aa12.95□□□□□ -0.34
USP39-215ENST00000481409 NOB1Q9ULX3 412 aaKnown RBP12.95□□□□□ -0.34
USP39-215ENST00000481409 C5P01031 1676 aa12.94□□□□□ -0.34
USP39-215ENST00000481409 DZIP1LQ8IYY4 767 aaKnown RBP12.94□□□□□ -0.34
USP39-215ENST00000481409 FRAT1Q92837 279 aaPredicted RBP12.94□□□□□ -0.34
USP39-215ENST00000481409 ACSBG1Q96GR2 724 aa12.94□□□□□ -0.34
USP39-215ENST00000481409 BCL2L13Q9BXK5 485 aa12.94□□□□□ -0.34
USP39-215ENST00000481409 RGS12O14924 1447 aa12.94□□□□□ -0.34
USP39-215ENST00000481409 PALLDQ8WX93 1383 aa12.94□□□□□ -0.34
USP39-215ENST00000481409 BTAF1O14981 1849 aa12.93□□□□□ -0.34
USP39-215ENST00000481409 EIF2S2P20042 333 aaKnown RBP12.93□□□□□ -0.34
USP39-215ENST00000481409 POTEAQ6S8J7 498 aa12.93□□□□□ -0.34
USP39-215ENST00000481409 FTSJ3Q8IY81 847 aaKnown RBP12.93□□□□□ -0.34
USP39-215ENST00000481409 IBTKQ9P2D0 1353 aaPredicted RBP12.93□□□□□ -0.34
USP39-215ENST00000481409 PXDNLA1KZ92 1463 aa12.92□□□□□ -0.34
USP39-215ENST00000481409 LOC102724428A0A0B4J2F2 783 aa12.92□□□□□ -0.34
USP39-215ENST00000481409 PTCD1O75127 700 aaKnown RBP12.92□□□□□ -0.34
USP39-215ENST00000481409 DDX58O95786 925 aaKnown RBP12.92□□□□□ -0.34
USP39-215ENST00000481409 TRIM27P14373 513 aa12.92□□□□□ -0.34
USP39-215ENST00000481409 SIK1P57059 783 aa12.92□□□□□ -0.34
USP39-215ENST00000481409 FLIIQ13045 1269 aa12.92□□□□□ -0.34
USP39-215ENST00000481409 ILDR1Q86SU0 546 aaPredicted RBP12.92□□□□□ -0.34
USP39-215ENST00000481409 RBM42Q9BTD8 480 aaKnown RBP12.92□□□□□ -0.34
USP39-215ENST00000481409 USP16Q9Y5T5 823 aa12.92□□□□□ -0.34
USP39-215ENST00000481409 ABCC4O15439 1325 aa12.91□□□□□ -0.34
USP39-215ENST00000481409 KCNQ2O43526 872 aa12.91□□□□□ -0.34
USP39-215ENST00000481409 CHPF2Q9P2E5 772 aa12.91□□□□□ -0.34
USP39-215ENST00000481409 LY75O60449 1722 aa12.91□□□□□ -0.34
USP39-215ENST00000481409 PLIN1O60240 522 aa12.9□□□□□ -0.34
USP39-215ENST00000481409 FKBP8Q14318 412 aa12.9□□□□□ -0.34
USP39-215ENST00000481409 MVPQ14764 893 aaKnown RBP12.9□□□□□ -0.34
USP39-215ENST00000481409 PDIA6Q15084 440 aa12.9□□□□□ -0.34
USP39-215ENST00000481409 SLC27A3Q5K4L6 730 aa12.9□□□□□ -0.34
USP39-215ENST00000481409 DDX19BQ9UMR2 479 aa12.9□□□□□ -0.34
USP39-215ENST00000481409 TJP1Q07157 1748 aa12.9□□□□□ -0.34
USP39-215ENST00000481409 CYP19A1P11511 503 aaPredicted RBP12.89□□□□□ -0.35
USP39-215ENST00000481409 ATP6V1AP38606 617 aa12.89□□□□□ -0.35
USP39-215ENST00000481409 CCT4P50991 539 aaKnown RBP12.89□□□□□ -0.35
USP39-215ENST00000481409 FKBP5Q13451 457 aaPredicted RBP12.89□□□□□ -0.35
USP39-215ENST00000481409 RC3H1Q5TC82 1133 aaKnown RBP12.89□□□□□ -0.35
USP39-215ENST00000481409 INTS3Q68E01 1043 aaKnown RBP12.89□□□□□ -0.35
USP39-215ENST00000481409 GTF3C3Q9Y5Q9 886 aa12.89□□□□□ -0.35
USP39-215ENST00000481409 RREB1Q92766 1687 aa12.89□□□□□ -0.35
USP39-215ENST00000481409 RGPD3A6NKT7 1758 aaPredicted RBP12.89□□□□□ -0.35
USP39-215ENST00000481409 RGPD4Q7Z3J3 1758 aa12.89□□□□□ -0.35
USP39-215ENST00000481409 N4BP2Q86UW6 1770 aaPredicted RBP12.89□□□□□ -0.35
USP39-215ENST00000481409 PRAMEF22A3QJZ6 481 aa12.88□□□□□ -0.35
USP39-215ENST00000481409 PLSCR1O15162 318 aa12.88□□□□□ -0.35
USP39-215ENST00000481409 RGL2O15211 777 aa12.88□□□□□ -0.35
USP39-215ENST00000481409 IL6STP40189 918 aaPredicted RBP12.88□□□□□ -0.35
USP39-215ENST00000481409 KSR2Q6VAB6 950 aa12.88□□□□□ -0.35
USP39-215ENST00000481409 NPM2Q86SE8 214 aaKnown RBP12.88□□□□□ -0.35
USP39-215ENST00000481409 DNAJC10Q8IXB1 793 aa12.88□□□□□ -0.35
USP39-215ENST00000481409 COL5A3P25940 1745 aaPredicted RBP12.88□□□□□ -0.35
USP39-215ENST00000481409 ATP10DQ9P241 1426 aa12.88□□□□□ -0.35
USP39-215ENST00000481409 CNTNAP4Q9C0A0 1308 aa12.88□□□□□ -0.35
USP39-215ENST00000481409 LRP10Q7Z4F1 713 aa12.87□□□□□ -0.35
USP39-215ENST00000481409 NECTIN2Q92692 538 aa12.87□□□□□ -0.35
USP39-215ENST00000481409 SLC4A9Q96Q91 983 aa12.87□□□□□ -0.35
USP39-215ENST00000481409 HDAC5Q9UQL6 1122 aa12.87□□□□□ -0.35
USP39-215ENST00000481409 TCERG1O14776 1098 aaKnown RBP12.86□□□□□ -0.35
USP39-215ENST00000481409 G2E3Q7L622 706 aa12.86□□□□□ -0.35
USP39-215ENST00000481409 PHAXQ9H814 394 aaKnown RBP12.86□□□□□ -0.35
USP39-215ENST00000481409 PPP4R2Q9NY27 417 aa12.86□□□□□ -0.35
USP39-215ENST00000481409 A0A087WZG4 1122 aa12.85□□□□□ -0.35
USP39-215ENST00000481409 ALDH1L1O75891 902 aa12.85□□□□□ -0.35
USP39-215ENST00000481409 TRIM37O94972 964 aa12.85□□□□□ -0.35
USP39-215ENST00000481409 FAM182BQ5T319 152 aa12.85□□□□□ -0.35
USP39-215ENST00000481409 C20orf194Q5TEA3 1177 aa12.85□□□□□ -0.35
USP39-215ENST00000481409 ANKRD13DQ6ZTN6 518 aa12.85□□□□□ -0.35
USP39-215ENST00000481409 COPS6Q7L5N1 327 aa12.85□□□□□ -0.35
USP39-215ENST00000481409 PLBD2Q8NHP8 589 aa12.85□□□□□ -0.35
USP39-215ENST00000481409 PANK1Q8TE04 598 aa12.85□□□□□ -0.35
USP39-215ENST00000481409 DNAAF4Q8WXU2 420 aa12.85□□□□□ -0.35
USP39-215ENST00000481409 CLUAP1Q96AJ1 413 aa12.85□□□□□ -0.35
USP39-215ENST00000481409 CRBNQ96SW2 442 aa12.85□□□□□ -0.35
USP39-215ENST00000481409 CCDC87Q9NVE4 849 aa12.85□□□□□ -0.35
USP39-215ENST00000481409 CCNL1Q9UK58 526 aaPredicted RBP12.85□□□□□ -0.35
USP39-215ENST00000481409 PI4KAP2A4QPH2 592 aa12.84□□□□□ -0.35
USP39-215ENST00000481409 NBPF26B4DH59 902 aa12.84□□□□□ -0.35
USP39-215ENST00000481409 ERVV-1B6SEH8 477 aa12.84□□□□□ -0.35
USP39-215ENST00000481409 A1BGP04217 495 aa12.84□□□□□ -0.35
USP39-215ENST00000481409 RLBP1P12271 317 aa12.84□□□□□ -0.35
USP39-215ENST00000481409 MYL6BP14649 208 aa12.84□□□□□ -0.35
USP39-215ENST00000481409 NEXNQ0ZGT2 675 aa12.84□□□□□ -0.35
USP39-215ENST00000481409 PROSER3Q2NL68 480 aa12.84□□□□□ -0.35
USP39-215ENST00000481409 NBPF14Q5TI25 921 aa12.84□□□□□ -0.35
USP39-215ENST00000481409 NBPF10Q6P3W6 841 aaKnown RBP12.84□□□□□ -0.35
USP39-215ENST00000481409 CCDC125Q86Z20 511 aa12.84□□□□□ -0.35
USP39-215ENST00000481409 ITPRIPQ8IWB1 547 aa12.84□□□□□ -0.35
USP39-215ENST00000481409 TMEM57Q8N5G2 664 aa12.84□□□□□ -0.35
USP39-215ENST00000481409 NBPF15Q8N660 670 aa12.84□□□□□ -0.35
USP39-215ENST00000481409 PI4KAP1Q8N8J0 262 aa12.84□□□□□ -0.35
USP39-215ENST00000481409 XAGE3Q8WTP9 111 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms