RNA–Protein interactions for RNA: ENST00000480658.5

CCM2-213, Transcript of CCM2 scaffold protein, humanhuman

TSL 2

Gene CCM2, Length 1,136 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-213ENST00000480658 YBX3P16989 372 aaKnown RBP eCLIP15.18■□□□□ 0.022e-6■■□□□ 12.1
CCM2-213ENST00000480658 PNISRQ8TF01 805 aaKnown RBP15.18■□□□□ 0.02
CCM2-213ENST00000480658 PXDNLA1KZ92 1463 aa15.18■□□□□ 0.02
CCM2-213ENST00000480658 MYH14Q7Z406 1995 aaKnown RBP15.18■□□□□ 0.02
CCM2-213ENST00000480658 PHACTR3Q96KR7 559 aa15.17■□□□□ 0.02
CCM2-213ENST00000480658 IL6STP40189 918 aaPredicted RBP15.16■□□□□ 0.02
CCM2-213ENST00000480658 SMIM5Q71RC9 77 aa15.16■□□□□ 0.02
CCM2-213ENST00000480658 ZNF496Q96IT1 587 aaPredicted RBP15.16■□□□□ 0.02
CCM2-213ENST00000480658 PDZRN3Q9UPQ7 1066 aa15.16■□□□□ 0.02
CCM2-213ENST00000480658 ZBTB1Q9Y2K1 713 aa15.16■□□□□ 0.02
CCM2-213ENST00000480658 RGL2O15211 777 aa15.15■□□□□ 0.02
CCM2-213ENST00000480658 GOLGB1Q14789 3259 aaKnown RBP15.15■□□□□ 0.02
CCM2-213ENST00000480658 SCN7AQ01118 1682 aa15.14■□□□□ 0.01
CCM2-213ENST00000480658 ZEB1P37275 1124 aaPredicted RBP15.14■□□□□ 0.01
CCM2-213ENST00000480658 LMOD3Q0VAK6 560 aa15.14■□□□□ 0.01
CCM2-213ENST00000480658 FKBP8Q14318 412 aa15.14■□□□□ 0.01
CCM2-213ENST00000480658 USPL1Q5W0Q7 1092 aa15.14■□□□□ 0.01
CCM2-213ENST00000480658 MYBBP1AQ9BQG0 1328 aaKnown RBP15.14■□□□□ 0.01
CCM2-213ENST00000480658 SNRPA1P09661 255 aaKnown RBP15.13■□□□□ 0.01
CCM2-213ENST00000480658 EIF5P55010 431 aaKnown RBP15.13■□□□□ 0.01
CCM2-213ENST00000480658 PIM2Q9P1W9 311 aa15.13■□□□□ 0.01
CCM2-213ENST00000480658 SRP68Q9UHB9 627 aaKnown RBP15.13■□□□□ 0.01
CCM2-213ENST00000480658 ZNF652Q9Y2D9 606 aa15.13■□□□□ 0.01
CCM2-213ENST00000480658 CARMIL3Q8ND23 1372 aa15.12■□□□□ 0.01
CCM2-213ENST00000480658 KIAA1551Q9HCM1 1747 aa15.12■□□□□ 0.01
CCM2-213ENST00000480658 POLRMTO00411 1230 aaKnown RBP15.12■□□□□ 0.01
CCM2-213ENST00000480658 GIGYF1O75420 1035 aaPredicted RBP15.12■□□□□ 0.01
CCM2-213ENST00000480658 CANXP27824 592 aaKnown RBP15.12■□□□□ 0.01
CCM2-213ENST00000480658 TM4SF1P30408 202 aa15.12■□□□□ 0.01
CCM2-213ENST00000480658 TAF7Q15545 349 aaPredicted RBP15.12■□□□□ 0.01
CCM2-213ENST00000480658 NFE2L2Q16236 605 aa15.11■□□□□ 0.01
CCM2-213ENST00000480658 MCM10Q7L590 875 aa15.11■□□□□ 0.01
CCM2-213ENST00000480658 BCS1LQ9Y276 419 aa15.11■□□□□ 0.01
CCM2-213ENST00000480658 NRXN2Q9P2S2 1712 aa15.11■□□□□ 0.01
CCM2-213ENST00000480658 ADCY9O60503 1353 aa15.11■□□□□ 0.01
CCM2-213ENST00000480658 DDR1Q08345 913 aa15.1■□□□□ 0.01
CCM2-213ENST00000480658 DALRD3Q5D0E6 543 aaKnown RBP15.1■□□□□ 0.01
CCM2-213ENST00000480658 BRCA1P38398 1863 aaKnown RBP15.1■□□□□ 0.01
CCM2-213ENST00000480658 ATP10DQ9P241 1426 aa15.09■□□□□ 0.01
CCM2-213ENST00000480658 LAMB4A4D0S4 1761 aa15.09■□□□□ 0.01
CCM2-213ENST00000480658 DPEP1P16444 411 aa15.09■□□□□ 0.01
CCM2-213ENST00000480658 NFIXQ14938 502 aa15.09■□□□□ 0.01
CCM2-213ENST00000480658 CLEC4GQ6UXB4 293 aa15.09■□□□□ 0.01
CCM2-213ENST00000480658 PLEKHF1Q96S99 279 aa15.09■□□□□ 0.01
CCM2-213ENST00000480658 BABAM1Q9NWV8 329 aa15.09■□□□□ 0.01
CCM2-213ENST00000480658 N4BP2Q86UW6 1770 aaPredicted RBP15.08■□□□□ 0.01
CCM2-213ENST00000480658 ARFGEF1Q9Y6D6 1849 aa15.08■□□□□ 0.01
CCM2-213ENST00000480658 A0A0G2JLW4 131 aa15.08■□□□□ 0
CCM2-213ENST00000480658 SERPINB2P05120 415 aa15.08■□□□□ 0
CCM2-213ENST00000480658 GPBP1L1Q9HC44 474 aaPredicted RBP15.08■□□□□ 0
CCM2-213ENST00000480658 ZNF330Q9Y3S2 320 aaPredicted RBP15.08■□□□□ 0
CCM2-213ENST00000480658 BCORQ6W2J9 1755 aa15.07■□□□□ 0
CCM2-213ENST00000480658 NPHP1O15259 732 aa15.07■□□□□ 0
CCM2-213ENST00000480658 PDE6BP35913 854 aa15.07■□□□□ 0
CCM2-213ENST00000480658 DDX10Q13206 875 aaKnown RBP15.07■□□□□ 0
CCM2-213ENST00000480658 WDR43Q15061 677 aaKnown RBP eCLIP15.07■□□□□ 0
CCM2-213ENST00000480658 SETDB2Q96T68 719 aa15.07■□□□□ 0
CCM2-213ENST00000480658 KDM3BQ7LBC6 1761 aa15.06■□□□□ 0
CCM2-213ENST00000480658 H0YIN7 160 aa15.06■□□□□ 0
CCM2-213ENST00000480658 ST5P78524 1137 aa15.06■□□□□ 0
CCM2-213ENST00000480658 DZIP3Q86Y13 1208 aaKnown RBP15.06■□□□□ 0
CCM2-213ENST00000480658 ERBB4Q15303 1308 aa15.06■□□□□ 0
CCM2-213ENST00000480658 ZC3H4Q9UPT8 1303 aaKnown RBP15.06■□□□□ 0
CCM2-213ENST00000480658 DLEC1Q9Y238 1755 aa15.06■□□□□ 0
CCM2-213ENST00000480658 C1QTNF8P60827 252 aa15.05■□□□□ -0
CCM2-213ENST00000480658 BRIP1Q9BX63 1249 aa15.05■□□□□ -0
CCM2-213ENST00000480658 ARHGAP27Q6ZUM4 889 aa15.04■□□□□ -0
CCM2-213ENST00000480658 CNBD1Q8NA66 436 aa15.04■□□□□ -0
CCM2-213ENST00000480658 BCL2L12Q9HB09 334 aa15.04■□□□□ -0
CCM2-213ENST00000480658 DLG5Q8TDM6 1919 aa15.04■□□□□ -0
CCM2-213ENST00000480658 CAMTA2O94983 1202 aa15.03■□□□□ -0
CCM2-213ENST00000480658 A1BGP04217 495 aa15.03■□□□□ -0
CCM2-213ENST00000480658 KCNA3P22001 575 aa15.03■□□□□ -0
CCM2-213ENST00000480658 DCTN1Q14203 1278 aa15.03■□□□□ -0
CCM2-213ENST00000480658 SOGA3Q5TF21 947 aa15.03■□□□□ -0
CCM2-213ENST00000480658 TTLL6Q8N841 843 aa15.03■□□□□ -0
CCM2-213ENST00000480658 TBC1D2BQ9UPU7 963 aa15.03■□□□□ -0
CCM2-213ENST00000480658 AFDNP55196 1824 aaKnown RBP15.03■□□□□ -0
CCM2-213ENST00000480658 RIPK4P57078 832 aa15.02■□□□□ -0
CCM2-213ENST00000480658 USP16Q9Y5T5 823 aa15.02■□□□□ -0
CCM2-213ENST00000480658 KCNQ3O43525 872 aa15.01□□□□□ -0.01
CCM2-213ENST00000480658 TBC1D9BQ66K14 1250 aa15.01□□□□□ -0.01
CCM2-213ENST00000480658 KIF6Q6ZMV9 814 aa15.01□□□□□ -0.01
CCM2-213ENST00000480658 BICDL1Q6ZP65 573 aa15.01□□□□□ -0.01
CCM2-213ENST00000480658 C2CD5Q86YS7 1000 aa15.01□□□□□ -0.01
CCM2-213ENST00000480658 RUNDC1Q96C34 613 aa15.01□□□□□ -0.01
CCM2-213ENST00000480658 TSPYL4Q9UJ04 414 aa15.01□□□□□ -0.01
CCM2-213ENST00000480658 WWC3Q9ULE0 1092 aa15.01□□□□□ -0.01
CCM2-213ENST00000480658 KDM2BQ8NHM5 1336 aa15□□□□□ -0.01
CCM2-213ENST00000480658 ERVV-1B6SEH8 477 aa15□□□□□ -0.01
CCM2-213ENST00000480658 CHRNA5P30532 468 aa15□□□□□ -0.01
CCM2-213ENST00000480658 EIF4A1P60842 406 aaKnown RBP15□□□□□ -0.01
CCM2-213ENST00000480658 CALD1Q05682 793 aaKnown RBP15□□□□□ -0.01
CCM2-213ENST00000480658 TPTE2Q6XPS3 522 aa15□□□□□ -0.01
CCM2-213ENST00000480658 NBPF5PQ86XG9 351 aaPredicted RBP15□□□□□ -0.01
CCM2-213ENST00000480658 CNKSR1Q969H4 720 aa15□□□□□ -0.01
CCM2-213ENST00000480658 NYXQ9GZU5 481 aa15□□□□□ -0.01
CCM2-213ENST00000480658 PRKRIP1Q9H875 184 aaPredicted RBP15□□□□□ -0.01
CCM2-213ENST00000480658 IBTKQ9P2D0 1353 aaPredicted RBP14.99□□□□□ -0.01
CCM2-213ENST00000480658 TMPOP42166 694 aaKnown RBP14.99□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms