RNA–Protein interactions for RNA: ENST00000480598.1

LIMS4-202, Transcript of LIM zinc finger domain containing 4, humanhuman

TSL 1 (best)

Gene LIMS4, Length 679 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS4-202ENST00000480598 BTBD11A6QL63 1104 aa19.84■□□□□ 0.77
LIMS4-202ENST00000480598 CANXP27824 592 aaKnown RBP19.84■□□□□ 0.77
LIMS4-202ENST00000480598 DDR1Q08345 913 aa19.84■□□□□ 0.77
LIMS4-202ENST00000480598 DCTN1Q14203 1278 aa19.84■□□□□ 0.77
LIMS4-202ENST00000480598 USPL1Q5W0Q7 1092 aa19.84■□□□□ 0.77
LIMS4-202ENST00000480598 RTF1Q92541 710 aaKnown RBP19.84■□□□□ 0.77
LIMS4-202ENST00000480598 N4BP2Q86UW6 1770 aaPredicted RBP19.84■□□□□ 0.77
LIMS4-202ENST00000480598 ZPR1O75312 459 aa19.83■□□□□ 0.77
LIMS4-202ENST00000480598 STARD3NLO95772 234 aa19.82■□□□□ 0.76
LIMS4-202ENST00000480598 FMNL2Q96PY5 1086 aa19.82■□□□□ 0.76
LIMS4-202ENST00000480598 A0A0G2JLW4 131 aa19.81■□□□□ 0.76
LIMS4-202ENST00000480598 NARFQ9UHQ1 456 aa19.81■□□□□ 0.76
LIMS4-202ENST00000480598 TGFB2P61812 414 aa19.8■□□□□ 0.76
LIMS4-202ENST00000480598 RALBP1Q15311 655 aa19.8■□□□□ 0.76
LIMS4-202ENST00000480598 DLG5Q8TDM6 1919 aa19.79■□□□□ 0.76
LIMS4-202ENST00000480598 POLRMTO00411 1230 aaKnown RBP19.79■□□□□ 0.76
LIMS4-202ENST00000480598 DPEP1P16444 411 aa19.79■□□□□ 0.76
LIMS4-202ENST00000480598 TM4SF1P30408 202 aa19.79■□□□□ 0.76
LIMS4-202ENST00000480598 EIF5P55010 431 aaKnown RBP19.79■□□□□ 0.76
LIMS4-202ENST00000480598 PLEKHF1Q96S99 279 aa19.79■□□□□ 0.76
LIMS4-202ENST00000480598 TEX13AQ9BXU3 409 aaPredicted RBP19.79■□□□□ 0.76
LIMS4-202ENST00000480598 BCL2L12Q9HB09 334 aa19.79■□□□□ 0.76
LIMS4-202ENST00000480598 HTATSF1O43719 755 aaKnown RBP19.78■□□□□ 0.76
LIMS4-202ENST00000480598 NEFMP07197 916 aa19.78■□□□□ 0.76
LIMS4-202ENST00000480598 NFIXQ14938 502 aa19.78■□□□□ 0.76
LIMS4-202ENST00000480598 PRAMEF22A3QJZ6 481 aa19.77■□□□□ 0.76
LIMS4-202ENST00000480598 A1BGP04217 495 aa19.77■□□□□ 0.76
LIMS4-202ENST00000480598 ZNF330Q9Y3S2 320 aaPredicted RBP19.77■□□□□ 0.76
LIMS4-202ENST00000480598 BCS1LQ9Y276 419 aa19.76■□□□□ 0.75
LIMS4-202ENST00000480598 BRCA1P38398 1863 aaKnown RBP19.75■□□□□ 0.75
LIMS4-202ENST00000480598 AFDNP55196 1824 aaKnown RBP19.75■□□□□ 0.75
LIMS4-202ENST00000480598 NFE2L2Q16236 605 aa19.75■□□□□ 0.75
LIMS4-202ENST00000480598 MIS18AQ9NYP9 233 aa19.75■□□□□ 0.75
LIMS4-202ENST00000480598 USP16Q9Y5T5 823 aa19.75■□□□□ 0.75
LIMS4-202ENST00000480598 A0A087WZG4 1122 aa19.74■□□□□ 0.75
LIMS4-202ENST00000480598 KCNA3P22001 575 aa19.74■□□□□ 0.75
LIMS4-202ENST00000480598 IL6STP40189 918 aaPredicted RBP19.74■□□□□ 0.75
LIMS4-202ENST00000480598 PIP4K2AP48426 406 aaPredicted RBP19.74■□□□□ 0.75
LIMS4-202ENST00000480598 THUMPD2Q9BTF0 503 aaKnown RBP19.74■□□□□ 0.75
LIMS4-202ENST00000480598 TBC1D2BQ9UPU7 963 aa19.74■□□□□ 0.75
LIMS4-202ENST00000480598 MAPK8IP3Q9UPT6 1336 aa19.74■□□□□ 0.75
LIMS4-202ENST00000480598 SCN7AQ01118 1682 aa19.73■□□□□ 0.75
LIMS4-202ENST00000480598 TAF7Q15545 349 aaPredicted RBP19.73■□□□□ 0.75
LIMS4-202ENST00000480598 BICDL1Q6ZP65 573 aa19.73■□□□□ 0.75
LIMS4-202ENST00000480598 MYBBP1AQ9BQG0 1328 aaKnown RBP19.73■□□□□ 0.75
LIMS4-202ENST00000480598 SNRPA1P09661 255 aaKnown RBP19.72■□□□□ 0.75
LIMS4-202ENST00000480598 CHRNA5P30532 468 aa19.72■□□□□ 0.75
LIMS4-202ENST00000480598 NRXN2Q9P2S2 1712 aa19.72■□□□□ 0.75
LIMS4-202ENST00000480598 ATP10DQ9P241 1426 aa19.71■□□□□ 0.75
LIMS4-202ENST00000480598 SERPINB2P05120 415 aa19.71■□□□□ 0.75
LIMS4-202ENST00000480598 PNNQ9H307 717 aaKnown RBP19.71■□□□□ 0.75
LIMS4-202ENST00000480598 ADCY9O60503 1353 aa19.7■□□□□ 0.74
LIMS4-202ENST00000480598 TBC1D9BQ66K14 1250 aa19.7■□□□□ 0.74
LIMS4-202ENST00000480598 KDM3BQ7LBC6 1761 aa19.7■□□□□ 0.74
LIMS4-202ENST00000480598 NPM2Q86SE8 214 aaKnown RBP19.69■□□□□ 0.74
LIMS4-202ENST00000480598 PIM2Q9P1W9 311 aa19.69■□□□□ 0.74
LIMS4-202ENST00000480598 CARMIL3Q8ND23 1372 aa19.69■□□□□ 0.74
LIMS4-202ENST00000480598 CAMTA2O94983 1202 aa19.68■□□□□ 0.74
LIMS4-202ENST00000480598 DZIP3Q86Y13 1208 aaKnown RBP19.68■□□□□ 0.74
LIMS4-202ENST00000480598 BCORQ6W2J9 1755 aa19.67■□□□□ 0.74
LIMS4-202ENST00000480598 ARFGEF1Q9Y6D6 1849 aa19.67■□□□□ 0.74
LIMS4-202ENST00000480598 DALRD3Q5D0E6 543 aaKnown RBP19.67■□□□□ 0.74
LIMS4-202ENST00000480598 ARHGAP27Q6ZUM4 889 aa19.67■□□□□ 0.74
LIMS4-202ENST00000480598 PNISRQ8TF01 805 aaKnown RBP19.67■□□□□ 0.74
LIMS4-202ENST00000480598 LAMB4A4D0S4 1761 aa19.66■□□□□ 0.74
LIMS4-202ENST00000480598 NBPF26B4DH59 902 aa19.66■□□□□ 0.74
LIMS4-202ENST00000480598 NBPF10Q6P3W6 841 aaKnown RBP19.66■□□□□ 0.74
LIMS4-202ENST00000480598 CCDC146Q8IYE0 955 aa19.66■□□□□ 0.74
LIMS4-202ENST00000480598 NBPF15Q8N660 670 aa19.66■□□□□ 0.74
LIMS4-202ENST00000480598 ZNF526Q8TF50 670 aaPredicted RBP19.66■□□□□ 0.74
LIMS4-202ENST00000480598 GIGYF1O75420 1035 aaPredicted RBP19.65■□□□□ 0.74
LIMS4-202ENST00000480598 RIPK4P57078 832 aa19.65■□□□□ 0.74
LIMS4-202ENST00000480598 CCDC24Q8N4L8 307 aa19.65■□□□□ 0.74
LIMS4-202ENST00000480598 TMPOP42166 694 aaKnown RBP19.64■□□□□ 0.73
LIMS4-202ENST00000480598 EIF4A1P60842 406 aaKnown RBP19.64■□□□□ 0.73
LIMS4-202ENST00000480598 PRKRIP1Q9H875 184 aaPredicted RBP19.64■□□□□ 0.73
LIMS4-202ENST00000480598 RRP7AQ9Y3A4 280 aaKnown RBP19.64■□□□□ 0.73
LIMS4-202ENST00000480598 ANKRD31Q8N7Z5 1873 aa19.63■□□□□ 0.73
LIMS4-202ENST00000480598 C1QTNF8P60827 252 aa19.63■□□□□ 0.73
LIMS4-202ENST00000480598 DLEC1Q9Y238 1755 aa19.62■□□□□ 0.73
LIMS4-202ENST00000480598 WDR43Q15061 677 aaKnown RBP eCLIP19.62■□□□□ 0.73
LIMS4-202ENST00000480598 PRR5LQ6MZQ0 368 aa19.62■□□□□ 0.73
LIMS4-202ENST00000480598 C2CD5Q86YS7 1000 aa19.62■□□□□ 0.73
LIMS4-202ENST00000480598 SETDB2Q96T68 719 aa19.62■□□□□ 0.73
LIMS4-202ENST00000480598 GPBP1L1Q9HC44 474 aaPredicted RBP19.62■□□□□ 0.73
LIMS4-202ENST00000480598 NEUROD2Q15784 382 aa19.61■□□□□ 0.73
LIMS4-202ENST00000480598 TSPYL4Q9UJ04 414 aa19.61■□□□□ 0.73
LIMS4-202ENST00000480598 ADAMTS8Q9UP79 889 aa19.6■□□□□ 0.73
LIMS4-202ENST00000480598 H0YIN7 160 aa19.59■□□□□ 0.73
LIMS4-202ENST00000480598 NGEFQ8N5V2 710 aa19.59■□□□□ 0.73
LIMS4-202ENST00000480598 CNBD1Q8NA66 436 aa19.59■□□□□ 0.73
LIMS4-202ENST00000480598 COL11A2P13942 1736 aaPredicted RBP19.59■□□□□ 0.73
LIMS4-202ENST00000480598 NPHP1O15259 732 aa19.58■□□□□ 0.72
LIMS4-202ENST00000480598 ZEB1P37275 1124 aaPredicted RBP19.58■□□□□ 0.72
LIMS4-202ENST00000480598 LMOD3Q0VAK6 560 aa19.58■□□□□ 0.72
LIMS4-202ENST00000480598 C9orf131Q5VYM1 1079 aa19.58■□□□□ 0.72
LIMS4-202ENST00000480598 CLEC4GQ6UXB4 293 aa19.58■□□□□ 0.72
LIMS4-202ENST00000480598 TTLL6Q8N841 843 aa19.58■□□□□ 0.72
LIMS4-202ENST00000480598 RUNDC1Q96C34 613 aa19.58■□□□□ 0.72
LIMS4-202ENST00000480598 BRIP1Q9BX63 1249 aa19.58■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms