RNA–Protein interactions for RNA: ENST00000479107.1

HLA-DPA1-247, Transcript of major histocompatibility complex, class II, DP alpha 1, humanhuman

Gene HLA-DPA1, Length 5,025 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DPA1-247ENST00000479107 ZKSCAN5Q9Y2L8 839 aa10.2□□□□□ -0.78
HLA-DPA1-247ENST00000479107 IGHDP01880 384 aa10.2□□□□□ -0.78
HLA-DPA1-247ENST00000479107 DPY19L2Q6NUT2 758 aa10.2□□□□□ -0.78
HLA-DPA1-247ENST00000479107 UBXN4Q92575 508 aa10.2□□□□□ -0.78
HLA-DPA1-247ENST00000479107 PTCH1Q13635 1447 aa10.2□□□□□ -0.78
HLA-DPA1-247ENST00000479107 G3BP1Q13283 466 aaKnown RBP eCLIP10.19□□□□□ -0.78
HLA-DPA1-247ENST00000479107 TAF7LQ5H9L4 462 aa10.19□□□□□ -0.78
HLA-DPA1-247ENST00000479107 SMAP1Q8IYB5 467 aaPredicted RBP10.19□□□□□ -0.78
HLA-DPA1-247ENST00000479107 GGNBP2Q9H3C7 697 aa10.19□□□□□ -0.78
HLA-DPA1-247ENST00000479107 BCS1LQ9Y276 419 aa10.19□□□□□ -0.78
HLA-DPA1-247ENST00000479107 UBTFL1P0CB47 393 aaPredicted RBP10.19□□□□□ -0.78
HLA-DPA1-247ENST00000479107 PTPN14Q15678 1187 aa10.19□□□□□ -0.78
HLA-DPA1-247ENST00000479107 MAP3K11Q16584 847 aa10.19□□□□□ -0.78
HLA-DPA1-247ENST00000479107 TMCO3Q6UWJ1 677 aa10.19□□□□□ -0.78
HLA-DPA1-247ENST00000479107 ZNF396Q96N95 335 aaPredicted RBP10.19□□□□□ -0.78
HLA-DPA1-247ENST00000479107 LRRC7Q96NW7 1537 aa10.19□□□□□ -0.78
HLA-DPA1-247ENST00000479107 TMEM57Q8N5G2 664 aa10.19□□□□□ -0.78
HLA-DPA1-247ENST00000479107 ZCRB1Q8TBF4 217 aaKnown RBP10.19□□□□□ -0.78
HLA-DPA1-247ENST00000479107 PTPN23Q9H3S7 1636 aa10.19□□□□□ -0.78
HLA-DPA1-247ENST00000479107 HMOX1P09601 288 aa10.19□□□□□ -0.78
HLA-DPA1-247ENST00000479107 USP25Q9UHP3 1055 aa10.19□□□□□ -0.78
HLA-DPA1-247ENST00000479107 CYP46A1Q9Y6A2 500 aa10.19□□□□□ -0.78
HLA-DPA1-247ENST00000479107 PLEKHH1Q9ULM0 1364 aa10.19□□□□□ -0.78
HLA-DPA1-247ENST00000479107 AKAP17AQ02040 695 aaKnown RBP10.18□□□□□ -0.78
HLA-DPA1-247ENST00000479107 ZSCAN23Q3MJ62 389 aa10.18□□□□□ -0.78
HLA-DPA1-247ENST00000479107 CCDC94Q9BW85 323 aaPredicted RBP10.18□□□□□ -0.78
HLA-DPA1-247ENST00000479107 TOMM22Q9NS69 142 aa10.18□□□□□ -0.78
HLA-DPA1-247ENST00000479107 KIF18AQ8NI77 898 aa10.18□□□□□ -0.78
HLA-DPA1-247ENST00000479107 ZSCAN31Q96LW9 406 aaPredicted RBP10.18□□□□□ -0.78
HLA-DPA1-247ENST00000479107 ADGBQ8N7X0 1667 aa10.18□□□□□ -0.78
HLA-DPA1-247ENST00000479107 HIP1O00291 1037 aa10.18□□□□□ -0.78
HLA-DPA1-247ENST00000479107 ANKRD1Q15327 319 aa10.18□□□□□ -0.78
HLA-DPA1-247ENST00000479107 ANKRD24Q8TF21 1146 aa10.18□□□□□ -0.78
HLA-DPA1-247ENST00000479107 EZH2Q15910 746 aaKnown RBP10.18□□□□□ -0.78
HLA-DPA1-247ENST00000479107 LRSAM1Q6UWE0 723 aa10.18□□□□□ -0.78
HLA-DPA1-247ENST00000479107 RPAP2Q8IXW5 612 aaPredicted RBP10.18□□□□□ -0.78
HLA-DPA1-247ENST00000479107 FMNL2Q96PY5 1086 aa10.18□□□□□ -0.78
HLA-DPA1-247ENST00000479107 SRCIN1Q9C0H9 1055 aa10.18□□□□□ -0.78
HLA-DPA1-247ENST00000479107 TSPYL4Q9UJ04 414 aa10.18□□□□□ -0.78
HLA-DPA1-247ENST00000479107 RNF17Q9BXT8 1623 aaKnown RBP10.18□□□□□ -0.78
HLA-DPA1-247ENST00000479107 FCHSD2O94868 740 aa10.17□□□□□ -0.78
HLA-DPA1-247ENST00000479107 BMP2KLQ5H9B9 411 aa10.17□□□□□ -0.78
HLA-DPA1-247ENST00000479107 LARP1BQ659C4 914 aaKnown RBP10.17□□□□□ -0.78
HLA-DPA1-247ENST00000479107 CLASRPQ8N2M8 674 aaKnown RBP10.17□□□□□ -0.78
HLA-DPA1-247ENST00000479107 MBD5Q9P267 1494 aa10.17□□□□□ -0.78
HLA-DPA1-247ENST00000479107 GNAI2P04899 355 aa10.17□□□□□ -0.78
HLA-DPA1-247ENST00000479107 CEP57L1Q8IYX8 460 aa10.17□□□□□ -0.78
HLA-DPA1-247ENST00000479107 SNX21Q969T3 373 aa10.17□□□□□ -0.78
HLA-DPA1-247ENST00000479107 RTCBQ9Y3I0 505 aaKnown RBP10.17□□□□□ -0.78
HLA-DPA1-247ENST00000479107 TNNT1P13805 278 aa10.17□□□□□ -0.78
HLA-DPA1-247ENST00000479107 PRKAR2BP31323 418 aa10.17□□□□□ -0.78
HLA-DPA1-247ENST00000479107 NEXNQ0ZGT2 675 aa10.17□□□□□ -0.78
HLA-DPA1-247ENST00000479107 FILIP1Q7Z7B0 1213 aa10.17□□□□□ -0.78
HLA-DPA1-247ENST00000479107 PCMTD1Q96MG8 357 aaPredicted RBP10.17□□□□□ -0.78
HLA-DPA1-247ENST00000479107 TIGD1Q96MW7 591 aa10.17□□□□□ -0.78
HLA-DPA1-247ENST00000479107 SURF6O75683 361 aaKnown RBP10.16□□□□□ -0.78
HLA-DPA1-247ENST00000479107 FOSBP53539 338 aa10.16□□□□□ -0.78
HLA-DPA1-247ENST00000479107 TERF1P54274 439 aa10.16□□□□□ -0.78
HLA-DPA1-247ENST00000479107 SPATA32Q96LK8 384 aa10.16□□□□□ -0.78
HLA-DPA1-247ENST00000479107 LRRCC1Q9C099 1032 aa10.16□□□□□ -0.78
HLA-DPA1-247ENST00000479107 TTC21AQ8NDW8 1320 aa10.16□□□□□ -0.78
HLA-DPA1-247ENST00000479107 BLMP54132 1417 aaPredicted RBP10.16□□□□□ -0.78
HLA-DPA1-247ENST00000479107 MAPK8IP2Q13387 824 aaPredicted RBP10.16□□□□□ -0.78
HLA-DPA1-247ENST00000479107 BBXQ8WY36 941 aaPredicted RBP10.16□□□□□ -0.78
HLA-DPA1-247ENST00000479107 CCDC47Q96A33 483 aaKnown RBP10.16□□□□□ -0.78
HLA-DPA1-247ENST00000479107 SIRT1Q96EB6 747 aa10.16□□□□□ -0.78
HLA-DPA1-247ENST00000479107 SPDYE4A6NLX3 237 aa10.16□□□□□ -0.78
HLA-DPA1-247ENST00000479107 NEMFO60524 1076 aa10.16□□□□□ -0.78
HLA-DPA1-247ENST00000479107 ADCY5O95622 1261 aa10.16□□□□□ -0.78
HLA-DPA1-247ENST00000479107 TRDNQ13061 729 aa10.16□□□□□ -0.78
HLA-DPA1-247ENST00000479107 ZNF622Q969S3 477 aaKnown RBP eCLIP10.16□□□□□ -0.78
HLA-DPA1-247ENST00000479107 ABCA6Q8N139 1617 aa10.16□□□□□ -0.78
HLA-DPA1-247ENST00000479107 DCTN1Q14203 1278 aa10.16□□□□□ -0.78
HLA-DPA1-247ENST00000479107 AXDND1Q5T1B0 1012 aaPredicted RBP10.16□□□□□ -0.78
HLA-DPA1-247ENST00000479107 PNPLA6Q8IY17 1366 aa10.15□□□□□ -0.78
HLA-DPA1-247ENST00000479107 CBFA2T2O43439 604 aa10.15□□□□□ -0.78
HLA-DPA1-247ENST00000479107 NOLC1Q14978 699 aaKnown RBP eCLIP10.15□□□□□ -0.78
HLA-DPA1-247ENST00000479107 CAGE1Q8TC20 777 aa10.15□□□□□ -0.78
HLA-DPA1-247ENST00000479107 SMARCE1Q969G3 411 aa10.15□□□□□ -0.78
HLA-DPA1-247ENST00000479107 SERPINC1P01008 464 aa10.15□□□□□ -0.78
HLA-DPA1-247ENST00000479107 EIF2S2P20042 333 aaKnown RBP10.15□□□□□ -0.78
HLA-DPA1-247ENST00000479107 LMOD1P29536 600 aaPredicted RBP10.15□□□□□ -0.78
HLA-DPA1-247ENST00000479107 PDE4CQ08493 712 aa10.15□□□□□ -0.78
HLA-DPA1-247ENST00000479107 SAFBQ15424 915 aaKnown RBP eCLIP10.15□□□□□ -0.78
HLA-DPA1-247ENST00000479107 CEP89Q96ST8 783 aa10.15□□□□□ -0.78
HLA-DPA1-247ENST00000479107 RNF123Q5XPI4 1314 aa10.15□□□□□ -0.78
HLA-DPA1-247ENST00000479107 CCT4P50991 539 aaKnown RBP10.15□□□□□ -0.78
HLA-DPA1-247ENST00000479107 CFAP45Q9UL16 551 aa10.15□□□□□ -0.78
HLA-DPA1-247ENST00000479107 ARHGEF5Q12774 1597 aa10.15□□□□□ -0.79
HLA-DPA1-247ENST00000479107 PATL2C9JE40 543 aaKnown RBP10.15□□□□□ -0.79
HLA-DPA1-247ENST00000479107 KIAA0754O94854 1291 aa10.15□□□□□ -0.79
HLA-DPA1-247ENST00000479107 NECTIN2Q92692 538 aa10.15□□□□□ -0.79
HLA-DPA1-247ENST00000479107 PAXBP1Q9Y5B6 917 aa10.15□□□□□ -0.79
HLA-DPA1-247ENST00000479107 CAPN15O75808 1086 aa10.14□□□□□ -0.79
HLA-DPA1-247ENST00000479107 STK38Q15208 465 aa10.14□□□□□ -0.79
HLA-DPA1-247ENST00000479107 ALDH1L2Q3SY69 923 aa10.14□□□□□ -0.79
HLA-DPA1-247ENST00000479107 FILIP1LQ4L180 1135 aa10.14□□□□□ -0.79
HLA-DPA1-247ENST00000479107 KRT222Q8N1A0 295 aa10.14□□□□□ -0.79
HLA-DPA1-247ENST00000479107 DDX58O95786 925 aaKnown RBP10.14□□□□□ -0.79
HLA-DPA1-247ENST00000479107 TRAPPC3LQ5T215 181 aa10.14□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 54.7 ms