RNA–Protein interactions for RNA: ENST00000477421.2

COL27A1-204, Transcript of collagen type XXVII alpha 1 chain, humanhuman

TSL 2

Gene COL27A1, Length 3,991 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL27A1-204ENST00000477421 KCNQ3O43525 872 aa13.16□□□□□ -0.3
COL27A1-204ENST00000477421 NBPF7P0C2Y1 421 aaPredicted RBP13.16□□□□□ -0.3
COL27A1-204ENST00000477421 CCDC57Q2TAC2 916 aa13.16□□□□□ -0.3
COL27A1-204ENST00000477421 NBPF6Q5VWK0 638 aa13.16□□□□□ -0.3
COL27A1-204ENST00000477421 NBPF4Q96M43 638 aa13.16□□□□□ -0.3
COL27A1-204ENST00000477421 SNRKQ9NRH2 765 aa13.16□□□□□ -0.3
COL27A1-204ENST00000477421 CNNM1Q9NRU3 951 aa13.16□□□□□ -0.3
COL27A1-204ENST00000477421 MLH3Q9UHC1 1453 aa13.16□□□□□ -0.3
COL27A1-204ENST00000477421 GSPT1P15170 499 aaKnown RBP13.16□□□□□ -0.3
COL27A1-204ENST00000477421 SASS6Q6UVJ0 657 aa13.16□□□□□ -0.3
COL27A1-204ENST00000477421 NECAB1Q8N987 351 aa13.16□□□□□ -0.3
COL27A1-204ENST00000477421 CROCC2H7BZ55 1655 aa13.16□□□□□ -0.3
COL27A1-204ENST00000477421 CAMK4Q16566 473 aa13.15□□□□□ -0.3
COL27A1-204ENST00000477421 LRRFIP1Q32MZ4 808 aaKnown RBP13.15□□□□□ -0.3
COL27A1-204ENST00000477421 KLHDC4Q8TBB5 520 aa13.15□□□□□ -0.3
COL27A1-204ENST00000477421 SDF4Q9BRK5 362 aa13.15□□□□□ -0.3
COL27A1-204ENST00000477421 CEP126Q9P2H0 1117 aa13.15□□□□□ -0.3
COL27A1-204ENST00000477421 USP19O94966 1318 aa13.15□□□□□ -0.3
COL27A1-204ENST00000477421 HIP1O00291 1037 aa13.15□□□□□ -0.3
COL27A1-204ENST00000477421 RRP12Q5JTH9 1297 aaKnown RBP13.15□□□□□ -0.3
COL27A1-204ENST00000477421 IL17REQ8NFR9 667 aa13.15□□□□□ -0.3
COL27A1-204ENST00000477421 PLXNC1O60486 1568 aa13.15□□□□□ -0.3
COL27A1-204ENST00000477421 NEO1Q92859 1461 aa13.15□□□□□ -0.3
COL27A1-204ENST00000477421 CPLX2Q6PUV4 134 aaKnown RBP13.15□□□□□ -0.3
COL27A1-204ENST00000477421 VPS37DQ86XT2 251 aa13.15□□□□□ -0.3
COL27A1-204ENST00000477421 SNX21Q969T3 373 aa13.15□□□□□ -0.3
COL27A1-204ENST00000477421 HYPKQ9NX55 129 aa13.15□□□□□ -0.3
COL27A1-204ENST00000477421 TFIP11Q9UBB9 837 aaKnown RBP13.15□□□□□ -0.3
COL27A1-204ENST00000477421 TMEM2Q9UHN6 1383 aa13.15□□□□□ -0.3
COL27A1-204ENST00000477421 CCDC173Q0VFZ6 552 aa13.14□□□□□ -0.31
COL27A1-204ENST00000477421 SIRT2Q8IXJ6 389 aa13.14□□□□□ -0.31
COL27A1-204ENST00000477421 CHAMP1Q96JM3 812 aa13.14□□□□□ -0.31
COL27A1-204ENST00000477421 PDCP20941 246 aa13.14□□□□□ -0.31
COL27A1-204ENST00000477421 RBM25P49756 843 aaKnown RBP13.14□□□□□ -0.31
COL27A1-204ENST00000477421 UBE2Q2Q8WVN8 375 aa13.14□□□□□ -0.31
COL27A1-204ENST00000477421 CHMP4CQ96CF2 233 aa13.14□□□□□ -0.31
COL27A1-204ENST00000477421 GPTP24298 496 aa13.14□□□□□ -0.31
COL27A1-204ENST00000477421 CCDC73Q6ZRK6 1079 aa13.14□□□□□ -0.31
COL27A1-204ENST00000477421 MTMR7Q9Y216 660 aa13.14□□□□□ -0.31
COL27A1-204ENST00000477421 PLEKHG3A1L390 1219 aa13.13□□□□□ -0.31
COL27A1-204ENST00000477421 TTC39AQ5SRH9 613 aa13.13□□□□□ -0.31
COL27A1-204ENST00000477421 ANKRD13DQ6ZTN6 518 aa13.13□□□□□ -0.31
COL27A1-204ENST00000477421 RASSF8Q8NHQ8 419 aa13.13□□□□□ -0.31
COL27A1-204ENST00000477421 NUTM2BA6NNL0 878 aaPredicted RBP13.13□□□□□ -0.31
COL27A1-204ENST00000477421 NUTM2EB1AL46 878 aaPredicted RBP13.13□□□□□ -0.31
COL27A1-204ENST00000477421 HSPA2P54652 639 aa13.13□□□□□ -0.31
COL27A1-204ENST00000477421 GUCY1B3Q02153 619 aa13.13□□□□□ -0.31
COL27A1-204ENST00000477421 DDX46Q7L014 1031 aaKnown RBP13.13□□□□□ -0.31
COL27A1-204ENST00000477421 NUTM2AQ8IVF1 878 aaPredicted RBP13.13□□□□□ -0.31
COL27A1-204ENST00000477421 LRRC2Q9BYS8 371 aa13.13□□□□□ -0.31
COL27A1-204ENST00000477421 LIMCH1Q9UPQ0 1083 aa13.13□□□□□ -0.31
COL27A1-204ENST00000477421 CD2BP2O95400 341 aaKnown RBP13.13□□□□□ -0.31
COL27A1-204ENST00000477421 CCDC158Q5M9N0 1113 aa13.13□□□□□ -0.31
COL27A1-204ENST00000477421 KIF6Q6ZMV9 814 aa13.13□□□□□ -0.31
COL27A1-204ENST00000477421 SYNE3Q6ZMZ3 975 aa13.13□□□□□ -0.31
COL27A1-204ENST00000477421 ROBO2Q9HCK4 1378 aa13.13□□□□□ -0.31
COL27A1-204ENST00000477421 UNC13BO14795 1591 aa13.13□□□□□ -0.31
COL27A1-204ENST00000477421 CDK11BP21127 795 aaKnown RBP13.13□□□□□ -0.31
COL27A1-204ENST00000477421 KRT85P78386 507 aa13.13□□□□□ -0.31
COL27A1-204ENST00000477421 TRIM5Q9C035 493 aa13.13□□□□□ -0.31
COL27A1-204ENST00000477421 ABCC4O15439 1325 aa13.12□□□□□ -0.31
COL27A1-204ENST00000477421 MAP3K5Q99683 1374 aa13.12□□□□□ -0.31
COL27A1-204ENST00000477421 CHMLP26374 656 aa13.12□□□□□ -0.31
COL27A1-204ENST00000477421 RBM10P98175 930 aaKnown RBP13.12□□□□□ -0.31
COL27A1-204ENST00000477421 EFCAB6Q5THR3 1501 aa13.12□□□□□ -0.31
COL27A1-204ENST00000477421 GRM8O00222 908 aa13.12□□□□□ -0.31
COL27A1-204ENST00000477421 AKAP4Q5JQC9 854 aa13.12□□□□□ -0.31
COL27A1-204ENST00000477421 IFNL2Q8IZJ0 200 aa13.12□□□□□ -0.31
COL27A1-204ENST00000477421 IDH1O75874 414 aaKnown RBP13.12□□□□□ -0.31
COL27A1-204ENST00000477421 RAB3GAP1Q15042 981 aa13.12□□□□□ -0.31
COL27A1-204ENST00000477421 IP6K1Q92551 441 aa13.12□□□□□ -0.31
COL27A1-204ENST00000477421 GOLIM4O00461 696 aa13.11□□□□□ -0.31
COL27A1-204ENST00000477421 AKAP17AQ02040 695 aaKnown RBP13.11□□□□□ -0.31
COL27A1-204ENST00000477421 TRIM29Q14134 588 aa13.11□□□□□ -0.31
COL27A1-204ENST00000477421 KSR2Q6VAB6 950 aa13.11□□□□□ -0.31
COL27A1-204ENST00000477421 PDE4CQ08493 712 aa13.11□□□□□ -0.31
COL27A1-204ENST00000477421 KLHL40Q2TBA0 621 aa13.11□□□□□ -0.31
COL27A1-204ENST00000477421 RAB11FIP4Q86YS3 637 aa13.11□□□□□ -0.31
COL27A1-204ENST00000477421 E9PCH4 1651 aa13.1□□□□□ -0.31
COL27A1-204ENST00000477421 ABCC3O15438 1527 aa13.1□□□□□ -0.31
COL27A1-204ENST00000477421 CCT2P78371 535 aaKnown RBP13.1□□□□□ -0.31
COL27A1-204ENST00000477421 PKP1Q13835 747 aa13.1□□□□□ -0.31
COL27A1-204ENST00000477421 NDUFB9Q9Y6M9 179 aa13.1□□□□□ -0.31
COL27A1-204ENST00000477421 SOS1Q07889 1333 aaPredicted RBP13.1□□□□□ -0.31
COL27A1-204ENST00000477421 TET3O43151 1660 aa13.1□□□□□ -0.31
COL27A1-204ENST00000477421 ME1P48163 572 aa13.1□□□□□ -0.31
COL27A1-204ENST00000477421 SPATA32Q96LK8 384 aa13.1□□□□□ -0.31
COL27A1-204ENST00000477421 MAP3K4Q9Y6R4 1608 aa13.1□□□□□ -0.31
COL27A1-204ENST00000477421 KIF1BO60333 1816 aa13.1□□□□□ -0.31
COL27A1-204ENST00000477421 GJB2P29033 226 aa13.1□□□□□ -0.31
COL27A1-204ENST00000477421 USP44Q9H0E7 712 aa13.1□□□□□ -0.31
COL27A1-204ENST00000477421 SBNO1A3KN83 1393 aa13.1□□□□□ -0.31
COL27A1-204ENST00000477421 HAND2P61296 217 aa13.09□□□□□ -0.31
COL27A1-204ENST00000477421 TPM4P67936 248 aa13.09□□□□□ -0.31
COL27A1-204ENST00000477421 ZSCAN23Q3MJ62 389 aa13.09□□□□□ -0.31
COL27A1-204ENST00000477421 LMBR1LQ6UX01 489 aa13.09□□□□□ -0.31
COL27A1-204ENST00000477421 TNMDQ9H2S6 317 aa13.09□□□□□ -0.31
COL27A1-204ENST00000477421 IFIT1P09914 478 aaKnown RBP13.09□□□□□ -0.31
COL27A1-204ENST00000477421 CKAP2LQ8IYA6 745 aa13.09□□□□□ -0.31
COL27A1-204ENST00000477421 EVI5LQ96CN4 794 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms