RNA–Protein interactions for RNA: ENST00000476724.1

TMEM53-208, Transcript of transmembrane protein 53, humanhuman

TSL 1 (best)

Gene TMEM53, Length 2,075 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM53-208ENST00000476724 DDX11L8A8MPP1 907 aa20.26■□□□□ 0.83
TMEM53-208ENST00000476724 SMARCA5O60264 1052 aaPredicted RBP20.26■□□□□ 0.83
TMEM53-208ENST00000476724 HOXB7P09629 217 aa20.26■□□□□ 0.83
TMEM53-208ENST00000476724 ATP8B2P98198 1209 aa20.26■□□□□ 0.83
TMEM53-208ENST00000476724 USP26Q9BXU7 913 aa20.26■□□□□ 0.83
TMEM53-208ENST00000476724 IFNL2Q8IZJ0 200 aa20.25■□□□□ 0.83
TMEM53-208ENST00000476724 OTUD7AQ8TE49 926 aaPredicted RBP20.25■□□□□ 0.83
TMEM53-208ENST00000476724 EVA1CP58658 441 aa20.25■□□□□ 0.83
TMEM53-208ENST00000476724 PIP4K2BP78356 416 aa20.25■□□□□ 0.83
TMEM53-208ENST00000476724 REC8O95072 547 aa20.24■□□□□ 0.83
TMEM53-208ENST00000476724 HSP90AA1P07900 732 aaKnown RBP20.24■□□□□ 0.83
TMEM53-208ENST00000476724 CARD10Q9BWT7 1032 aa20.24■□□□□ 0.83
TMEM53-208ENST00000476724 BTG4Q9NY30 223 aa20.24■□□□□ 0.83
TMEM53-208ENST00000476724 APBB1O00213 710 aa20.23■□□□□ 0.83
TMEM53-208ENST00000476724 L1TD1Q5T7N2 865 aaKnown RBP20.23■□□□□ 0.83
TMEM53-208ENST00000476724 HDGFL1Q5TGJ6 251 aa20.23■□□□□ 0.83
TMEM53-208ENST00000476724 PLEKHG2Q9H7P9 1386 aa20.23■□□□□ 0.83
TMEM53-208ENST00000476724 COL14A1Q05707 1796 aaKnown RBP20.23■□□□□ 0.83
TMEM53-208ENST00000476724 SHANK3Q9BYB0 1731 aa20.23■□□□□ 0.83
TMEM53-208ENST00000476724 PDE1AP54750 535 aa20.23■□□□□ 0.83
TMEM53-208ENST00000476724 LRRCC1Q9C099 1032 aa20.22■□□□□ 0.83
TMEM53-208ENST00000476724 PTMSP20962 102 aa20.22■□□□□ 0.83
TMEM53-208ENST00000476724 RAB3GAP1Q15042 981 aa20.22■□□□□ 0.83
TMEM53-208ENST00000476724 SLC52A2Q9HAB3 445 aa20.22■□□□□ 0.83
TMEM53-208ENST00000476724 EIF2S2P20042 333 aaKnown RBP20.21■□□□□ 0.83
TMEM53-208ENST00000476724 GBP4Q96PP9 640 aa20.21■□□□□ 0.83
TMEM53-208ENST00000476724 CD2BP2O95400 341 aaKnown RBP20.2■□□□□ 0.82
TMEM53-208ENST00000476724 NFATC2IPQ8NCF5 419 aa20.2■□□□□ 0.82
TMEM53-208ENST00000476724 SRCIN1Q9C0H9 1055 aa20.2■□□□□ 0.82
TMEM53-208ENST00000476724 PRAMEF22A3QJZ6 481 aa20.2■□□□□ 0.82
TMEM53-208ENST00000476724 ERC2O15083 957 aa20.2■□□□□ 0.82
TMEM53-208ENST00000476724 TRAK2O60296 914 aa20.2■□□□□ 0.82
TMEM53-208ENST00000476724 TOM1O60784 492 aa20.2■□□□□ 0.82
TMEM53-208ENST00000476724 IL2RBP14784 551 aa20.2■□□□□ 0.82
TMEM53-208ENST00000476724 SLC39A6Q13433 755 aa20.2■□□□□ 0.82
TMEM53-208ENST00000476724 RBM42Q9BTD8 480 aaKnown RBP20.2■□□□□ 0.82
TMEM53-208ENST00000476724 IBTKQ9P2D0 1353 aaPredicted RBP20.19■□□□□ 0.82
TMEM53-208ENST00000476724 SALL3Q9BXA9 1300 aa20.19■□□□□ 0.82
TMEM53-208ENST00000476724 ZCRB1Q8TBF4 217 aaKnown RBP20.19■□□□□ 0.82
TMEM53-208ENST00000476724 DCAF5Q96JK2 942 aa20.19■□□□□ 0.82
TMEM53-208ENST00000476724 USP44Q9H0E7 712 aa20.19■□□□□ 0.82
TMEM53-208ENST00000476724 MRC1P22897 1456 aa20.19■□□□□ 0.82
TMEM53-208ENST00000476724 HEG1Q9ULI3 1381 aa20.19■□□□□ 0.82
TMEM53-208ENST00000476724 UBTFL1P0CB47 393 aaPredicted RBP20.18■□□□□ 0.82
TMEM53-208ENST00000476724 TNPO1Q92973 898 aaKnown RBP20.18■□□□□ 0.82
TMEM53-208ENST00000476724 EXOC6BQ9Y2D4 811 aa20.18■□□□□ 0.82
TMEM53-208ENST00000476724 PHAXQ9H814 394 aaKnown RBP20.18■□□□□ 0.82
TMEM53-208ENST00000476724 PNMA6EA0A0J9YXQ4 647 aa20.17■□□□□ 0.82
TMEM53-208ENST00000476724 IL27Q8NEV9 243 aa20.17■□□□□ 0.82
TMEM53-208ENST00000476724 LRRFIP2Q9Y608 721 aaKnown RBP20.17■□□□□ 0.82
TMEM53-208ENST00000476724 PCDH11XQ9BZA7 1347 aa20.17■□□□□ 0.82
TMEM53-208ENST00000476724 PCDH11YQ9BZA8 1340 aa20.17■□□□□ 0.82
TMEM53-208ENST00000476724 C5P01031 1676 aa20.17■□□□□ 0.82
TMEM53-208ENST00000476724 GIGYF1O75420 1035 aaPredicted RBP20.17■□□□□ 0.82
TMEM53-208ENST00000476724 CHPF2Q9P2E5 772 aa20.17■□□□□ 0.82
TMEM53-208ENST00000476724 STAP2Q9UGK3 403 aa20.17■□□□□ 0.82
TMEM53-208ENST00000476724 BRPF3Q9ULD4 1205 aa20.17■□□□□ 0.82
TMEM53-208ENST00000476724 PLCH1Q4KWH8 1693 aa20.16■□□□□ 0.82
TMEM53-208ENST00000476724 MX1P20591 662 aa20.16■□□□□ 0.82
TMEM53-208ENST00000476724 ZNF790Q6PG37 636 aa20.16■□□□□ 0.82
TMEM53-208ENST00000476724 SSH3Q8TE77 659 aa20.16■□□□□ 0.82
TMEM53-208ENST00000476724 AOX1Q06278 1338 aa20.16■□□□□ 0.82
TMEM53-208ENST00000476724 ST18O60284 1047 aa20.15■□□□□ 0.82
TMEM53-208ENST00000476724 RAB11FIP3O75154 756 aa20.15■□□□□ 0.82
TMEM53-208ENST00000476724 ANXA1P04083 346 aa20.15■□□□□ 0.82
TMEM53-208ENST00000476724 UBAP1LF5GYI3 381 aa20.15■□□□□ 0.82
TMEM53-208ENST00000476724 ADAMTS2O95450 1211 aa20.15■□□□□ 0.82
TMEM53-208ENST00000476724 SKOR2Q2VWA4 1001 aaPredicted RBP20.15■□□□□ 0.82
TMEM53-208ENST00000476724 TUBGCP6Q96RT7 1819 aa20.15■□□□□ 0.82
TMEM53-208ENST00000476724 CLEC17AQ6ZS10 378 aa20.14■□□□□ 0.81
TMEM53-208ENST00000476724 DDX54Q8TDD1 881 aaKnown RBP20.14■□□□□ 0.81
TMEM53-208ENST00000476724 GOLGA6L3A6NEY3 463 aa20.12■□□□□ 0.81
TMEM53-208ENST00000476724 CABP4P57796 275 aa20.12■□□□□ 0.81
TMEM53-208ENST00000476724 CWC22Q9HCG8 908 aaKnown RBP20.12■□□□□ 0.81
TMEM53-208ENST00000476724 ISY1Q9ULR0 285 aaKnown RBP20.12■□□□□ 0.81
TMEM53-208ENST00000476724 FSD2A1L4K1 749 aa20.12■□□□□ 0.81
TMEM53-208ENST00000476724 NUTM2BA6NNL0 878 aaPredicted RBP20.12■□□□□ 0.81
TMEM53-208ENST00000476724 NUTM2EB1AL46 878 aaPredicted RBP20.12■□□□□ 0.81
TMEM53-208ENST00000476724 POLA2Q14181 598 aa20.12■□□□□ 0.81
TMEM53-208ENST00000476724 NUTM2AQ8IVF1 878 aaPredicted RBP20.12■□□□□ 0.81
TMEM53-208ENST00000476724 DNAAF4Q8WXU2 420 aa20.12■□□□□ 0.81
TMEM53-208ENST00000476724 NUCB2P80303 420 aa20.11■□□□□ 0.81
TMEM53-208ENST00000476724 NRAPQ86VF7 1730 aa20.11■□□□□ 0.81
TMEM53-208ENST00000476724 TOGARAM1Q9Y4F4 1720 aa20.11■□□□□ 0.81
TMEM53-208ENST00000476724 EPB41L2O43491 1005 aaKnown RBP20.11■□□□□ 0.81
TMEM53-208ENST00000476724 PROSER3Q2NL68 480 aa20.11■□□□□ 0.81
TMEM53-208ENST00000476724 ZNF496Q96IT1 587 aaPredicted RBP20.11■□□□□ 0.81
TMEM53-208ENST00000476724 DBF4Q9UBU7 674 aaPredicted RBP20.11■□□□□ 0.81
TMEM53-208ENST00000476724 DISP2A7MBM2 1401 aa20.1■□□□□ 0.81
TMEM53-208ENST00000476724 BEND3Q5T5X7 828 aa20.1■□□□□ 0.81
TMEM53-208ENST00000476724 ESYT1Q9BSJ8 1104 aa20.1■□□□□ 0.81
TMEM53-208ENST00000476724 WNK3Q9BYP7 1800 aa20.09■□□□□ 0.81
TMEM53-208ENST00000476724 GOLGA6L22H0YM25 854 aa20.09■□□□□ 0.81
TMEM53-208ENST00000476724 MCCP23508 829 aa20.09■□□□□ 0.81
TMEM53-208ENST00000476724 NKX1-1Q15270 411 aaPredicted RBP20.09■□□□□ 0.81
TMEM53-208ENST00000476724 FOXD4L1Q9NU39 408 aa20.09■□□□□ 0.81
TMEM53-208ENST00000476724 HDAC5Q9UQL6 1122 aa20.09■□□□□ 0.81
TMEM53-208ENST00000476724 GLI3P10071 1580 aa20.09■□□□□ 0.81
TMEM53-208ENST00000476724 HSP90AB4PQ58FF6 505 aa20.09■□□□□ 0.81
TMEM53-208ENST00000476724 PPP1R42Q7Z4L9 355 aa20.09■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms