RNA–Protein interactions for RNA: ENST00000474962.1

CLIP2-204, Transcript of CAP-Gly domain containing linker protein 2, humanhuman

TSL 3

Gene CLIP2, Length 690 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP2-204ENST00000474962 CEP350Q5VT06 3117 aa15.79■□□□□ 0.12
CLIP2-204ENST00000474962 KCNQ3O43525 872 aa15.78■□□□□ 0.12
CLIP2-204ENST00000474962 CANXP27824 592 aaKnown RBP15.78■□□□□ 0.12
CLIP2-204ENST00000474962 ZNF790Q6PG37 636 aa15.78■□□□□ 0.12
CLIP2-204ENST00000474962 TTC5Q8N0Z6 440 aa15.78■□□□□ 0.12
CLIP2-204ENST00000474962 BCS1LQ9Y276 419 aa15.78■□□□□ 0.12
CLIP2-204ENST00000474962 CICQ96RK0 1608 aaPredicted RBP15.77■□□□□ 0.12
CLIP2-204ENST00000474962 NARFQ9UHQ1 456 aa15.77■□□□□ 0.12
CLIP2-204ENST00000474962 PXDNLA1KZ92 1463 aa15.77■□□□□ 0.11
CLIP2-204ENST00000474962 MRC1P22897 1456 aa15.77■□□□□ 0.11
CLIP2-204ENST00000474962 TJP1Q07157 1748 aa15.77■□□□□ 0.11
CLIP2-204ENST00000474962 POLRMTO00411 1230 aaKnown RBP15.76■□□□□ 0.11
CLIP2-204ENST00000474962 FCHSD2O94868 740 aa15.76■□□□□ 0.11
CLIP2-204ENST00000474962 STARD3NLO95772 234 aa15.76■□□□□ 0.11
CLIP2-204ENST00000474962 KCPQ6ZWJ8 1503 aa15.76■□□□□ 0.11
CLIP2-204ENST00000474962 GIGYF1O75420 1035 aaPredicted RBP15.75■□□□□ 0.11
CLIP2-204ENST00000474962 NFIXQ14938 502 aa15.75■□□□□ 0.11
CLIP2-204ENST00000474962 ARHGAP27Q6ZUM4 889 aa15.75■□□□□ 0.11
CLIP2-204ENST00000474962 MCM10Q7L590 875 aa15.75■□□□□ 0.11
CLIP2-204ENST00000474962 ZNF526Q8TF50 670 aaPredicted RBP15.75■□□□□ 0.11
CLIP2-204ENST00000474962 PRKRIP1Q9H875 184 aaPredicted RBP15.75■□□□□ 0.11
CLIP2-204ENST00000474962 BCL2L12Q9HB09 334 aa15.75■□□□□ 0.11
CLIP2-204ENST00000474962 C10orf71Q711Q0 1435 aa15.75■□□□□ 0.11
CLIP2-204ENST00000474962 BTBD11A6QL63 1104 aa15.74■□□□□ 0.11
CLIP2-204ENST00000474962 CHRNA5P30532 468 aa15.74■□□□□ 0.11
CLIP2-204ENST00000474962 EIF5P55010 431 aaKnown RBP15.74■□□□□ 0.11
CLIP2-204ENST00000474962 DCTN1Q14203 1278 aa15.74■□□□□ 0.11
CLIP2-204ENST00000474962 ADAMTS7Q9UKP4 1686 aa15.73■□□□□ 0.11
CLIP2-204ENST00000474962 MYBBP1AQ9BQG0 1328 aaKnown RBP15.73■□□□□ 0.11
CLIP2-204ENST00000474962 A1BGP04217 495 aa15.73■□□□□ 0.11
CLIP2-204ENST00000474962 TEX13AQ9BXU3 409 aaPredicted RBP15.73■□□□□ 0.11
CLIP2-204ENST00000474962 ATP10DQ9P241 1426 aa15.73■□□□□ 0.11
CLIP2-204ENST00000474962 COL15A1P39059 1388 aa15.73■□□□□ 0.11
CLIP2-204ENST00000474962 CEMIPQ8WUJ3 1361 aa15.73■□□□□ 0.11
CLIP2-204ENST00000474962 HEG1Q9ULI3 1381 aa15.73■□□□□ 0.11
CLIP2-204ENST00000474962 N4BP2Q86UW6 1770 aaPredicted RBP15.72■□□□□ 0.11
CLIP2-204ENST00000474962 C4AP0C0L4 1744 aa15.72■□□□□ 0.11
CLIP2-204ENST00000474962 FMNL2Q96PY5 1086 aa15.72■□□□□ 0.11
CLIP2-204ENST00000474962 GPBP1L1Q9HC44 474 aaPredicted RBP15.72■□□□□ 0.11
CLIP2-204ENST00000474962 PIM2Q9P1W9 311 aa15.72■□□□□ 0.11
CLIP2-204ENST00000474962 TBC1D2BQ9UPU7 963 aa15.72■□□□□ 0.11
CLIP2-204ENST00000474962 VIRMAQ69YN4 1812 aaKnown RBP15.72■□□□□ 0.11
CLIP2-204ENST00000474962 SERPINB2P05120 415 aa15.71■□□□□ 0.11
CLIP2-204ENST00000474962 IFFO2Q5TF58 517 aa15.71■□□□□ 0.11
CLIP2-204ENST00000474962 DIEXFQ68CQ4 756 aaKnown RBP15.71■□□□□ 0.11
CLIP2-204ENST00000474962 BICDL1Q6ZP65 573 aa15.71■□□□□ 0.11
CLIP2-204ENST00000474962 RTF1Q92541 710 aaKnown RBP15.71■□□□□ 0.11
CLIP2-204ENST00000474962 ZNF330Q9Y3S2 320 aaPredicted RBP15.71■□□□□ 0.11
CLIP2-204ENST00000474962 USP16Q9Y5T5 823 aa15.71■□□□□ 0.11
CLIP2-204ENST00000474962 KIF13BQ9NQT8 1826 aa15.71■□□□□ 0.1
CLIP2-204ENST00000474962 SENP3-EIF4A1A0A087X0R7 540 aa15.7■□□□□ 0.1
CLIP2-204ENST00000474962 PRAMEF22A3QJZ6 481 aa15.7■□□□□ 0.1
CLIP2-204ENST00000474962 DALRD3Q5D0E6 543 aaKnown RBP15.7■□□□□ 0.1
CLIP2-204ENST00000474962 MIS18AQ9NYP9 233 aa15.7■□□□□ 0.1
CLIP2-204ENST00000474962 KIAA1551Q9HCM1 1747 aa15.69■□□□□ 0.1
CLIP2-204ENST00000474962 A0A087WZG4 1122 aa15.69■□□□□ 0.1
CLIP2-204ENST00000474962 PIP4K2AP48426 406 aaPredicted RBP15.69■□□□□ 0.1
CLIP2-204ENST00000474962 ADCY9O60503 1353 aa15.69■□□□□ 0.1
CLIP2-204ENST00000474962 IL6STP40189 918 aaPredicted RBP15.68■□□□□ 0.1
CLIP2-204ENST00000474962 TBC1D9BQ66K14 1250 aa15.68■□□□□ 0.1
CLIP2-204ENST00000474962 HTATSF1O43719 755 aaKnown RBP15.67■□□□□ 0.1
CLIP2-204ENST00000474962 PLEKHF1Q96S99 279 aa15.67■□□□□ 0.1
CLIP2-204ENST00000474962 UBR2Q8IWV8 1755 aa15.67■□□□□ 0.1
CLIP2-204ENST00000474962 HOXD11P31277 338 aaPredicted RBP15.66■□□□□ 0.1
CLIP2-204ENST00000474962 TAF7Q15545 349 aaPredicted RBP15.66■□□□□ 0.1
CLIP2-204ENST00000474962 CCDC24Q8N4L8 307 aa15.66■□□□□ 0.1
CLIP2-204ENST00000474962 SNRPA1P09661 255 aaKnown RBP15.65■□□□□ 0.1
CLIP2-204ENST00000474962 C9orf131Q5VYM1 1079 aa15.65■□□□□ 0.1
CLIP2-204ENST00000474962 SIPA1L3O60292 1781 aaPredicted RBP15.64■□□□□ 0.1
CLIP2-204ENST00000474962 CAMTA2O94983 1202 aa15.64■□□□□ 0.09
CLIP2-204ENST00000474962 NPM2Q86SE8 214 aaKnown RBP15.64■□□□□ 0.09
CLIP2-204ENST00000474962 C2CD5Q86YS7 1000 aa15.64■□□□□ 0.09
CLIP2-204ENST00000474962 THUMPD2Q9BTF0 503 aaKnown RBP15.64■□□□□ 0.09
CLIP2-204ENST00000474962 NBPF26B4DH59 902 aa15.63■□□□□ 0.09
CLIP2-204ENST00000474962 H0YIN7 160 aa15.63■□□□□ 0.09
CLIP2-204ENST00000474962 KIF3CO14782 793 aa15.63■□□□□ 0.09
CLIP2-204ENST00000474962 NBPF10Q6P3W6 841 aaKnown RBP15.63■□□□□ 0.09
CLIP2-204ENST00000474962 NBPF15Q8N660 670 aa15.63■□□□□ 0.09
CLIP2-204ENST00000474962 NEFMP07197 916 aa15.62■□□□□ 0.09
CLIP2-204ENST00000474962 WDR43Q15061 677 aaKnown RBP eCLIP15.62■□□□□ 0.09
CLIP2-204ENST00000474962 NFE2L2Q16236 605 aa15.62■□□□□ 0.09
CLIP2-204ENST00000474962 DZIP3Q86Y13 1208 aaKnown RBP15.62■□□□□ 0.09
CLIP2-204ENST00000474962 SETDB2Q96T68 719 aa15.62■□□□□ 0.09
CLIP2-204ENST00000474962 CARMIL3Q8ND23 1372 aa15.62■□□□□ 0.09
CLIP2-204ENST00000474962 PRR5LQ6MZQ0 368 aa15.61■□□□□ 0.09
CLIP2-204ENST00000474962 TTLL6Q8N841 843 aa15.61■□□□□ 0.09
CLIP2-204ENST00000474962 BRIP1Q9BX63 1249 aa15.61■□□□□ 0.09
CLIP2-204ENST00000474962 AFDNP55196 1824 aaKnown RBP15.61■□□□□ 0.09
CLIP2-204ENST00000474962 BRCA1P38398 1863 aaKnown RBP15.61■□□□□ 0.09
CLIP2-204ENST00000474962 ZNF622Q969S3 477 aaKnown RBP eCLIP15.6■□□□□ 0.09
CLIP2-204ENST00000474962 PNNQ9H307 717 aaKnown RBP15.6■□□□□ 0.09
CLIP2-204ENST00000474962 MRS2Q9HD23 443 aa15.6■□□□□ 0.09
CLIP2-204ENST00000474962 NMRK2Q9NPI5 230 aa15.6■□□□□ 0.09
CLIP2-204ENST00000474962 RNF181Q9P0P0 153 aa15.6■□□□□ 0.09
CLIP2-204ENST00000474962 PDE6BP35913 854 aa15.58■□□□□ 0.08
CLIP2-204ENST00000474962 PRELPP51888 382 aa15.58■□□□□ 0.08
CLIP2-204ENST00000474962 RASSF7Q02833 373 aa15.58■□□□□ 0.08
CLIP2-204ENST00000474962 NGEFQ8N5V2 710 aa15.58■□□□□ 0.08
CLIP2-204ENST00000474962 ZNF219Q9P2Y4 722 aaPredicted RBP15.58■□□□□ 0.08
CLIP2-204ENST00000474962 NPHP1O15259 732 aa15.57■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms