RNA–Protein interactions for RNA: ENST00000471309.1

VPS52-216, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2

Gene VPS52, Length 505 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-216ENST00000471309 HDAC1Q13547 482 aaPredicted RBP11.86□□□□□ -0.51
VPS52-216ENST00000471309 VPS72Q15906 364 aa11.86□□□□□ -0.51
VPS52-216ENST00000471309 RWDD1Q9H446 243 aaPredicted RBP11.86□□□□□ -0.51
VPS52-216ENST00000471309 CICQ96RK0 1608 aaPredicted RBP11.86□□□□□ -0.51
VPS52-216ENST00000471309 ATP10DQ9P241 1426 aa11.86□□□□□ -0.51
VPS52-216ENST00000471309 NGLY1Q96IV0 654 aa11.85□□□□□ -0.51
VPS52-216ENST00000471309 C8orf37Q96NL8 207 aa11.85□□□□□ -0.51
VPS52-216ENST00000471309 HYPKQ9NX55 129 aa11.85□□□□□ -0.51
VPS52-216ENST00000471309 TMOD3Q9NYL9 352 aa11.85□□□□□ -0.51
VPS52-216ENST00000471309 BCL9O00512 1426 aa11.85□□□□□ -0.51
VPS52-216ENST00000471309 ERBB4Q15303 1308 aa11.85□□□□□ -0.51
VPS52-216ENST00000471309 PRAMEF22A3QJZ6 481 aa11.84□□□□□ -0.51
VPS52-216ENST00000471309 NPM3O75607 178 aaKnown RBP11.84□□□□□ -0.51
VPS52-216ENST00000471309 DDB1Q16531 1140 aa11.84□□□□□ -0.51
VPS52-216ENST00000471309 PHAXQ9H814 394 aaKnown RBP11.84□□□□□ -0.51
VPS52-216ENST00000471309 DDX21Q9NR30 783 aaKnown RBP eCLIP11.84□□□□□ -0.51
VPS52-216ENST00000471309 ADCY9O60503 1353 aa11.83□□□□□ -0.52
VPS52-216ENST00000471309 F6X3S4 739 aa11.83□□□□□ -0.52
VPS52-216ENST00000471309 CCDC9Q9Y3X0 531 aaKnown RBP11.83□□□□□ -0.52
VPS52-216ENST00000471309 TJP1Q07157 1748 aa11.83□□□□□ -0.52
VPS52-216ENST00000471309 IBTKQ9P2D0 1353 aaPredicted RBP11.82□□□□□ -0.52
VPS52-216ENST00000471309 PDIA6Q15084 440 aa11.82□□□□□ -0.52
VPS52-216ENST00000471309 PROSER3Q2NL68 480 aa11.82□□□□□ -0.52
VPS52-216ENST00000471309 SLC4A10Q6U841 1118 aa11.82□□□□□ -0.52
VPS52-216ENST00000471309 USP21Q9UK80 565 aa11.82□□□□□ -0.52
VPS52-216ENST00000471309 ARFGEF2Q9Y6D5 1785 aa11.82□□□□□ -0.52
VPS52-216ENST00000471309 NUP188Q5SRE5 1749 aa11.81□□□□□ -0.52
VPS52-216ENST00000471309 SMC5Q8IY18 1101 aa11.81□□□□□ -0.52
VPS52-216ENST00000471309 PIGBQ92521 554 aa11.81□□□□□ -0.52
VPS52-216ENST00000471309 ATRNO75882 1429 aa11.8□□□□□ -0.52
VPS52-216ENST00000471309 DDX58O95786 925 aaKnown RBP11.8□□□□□ -0.52
VPS52-216ENST00000471309 ANXA1P04083 346 aa11.8□□□□□ -0.52
VPS52-216ENST00000471309 MEX3CQ5U5Q3 659 aaKnown RBP11.8□□□□□ -0.52
VPS52-216ENST00000471309 KSR2Q6VAB6 950 aa11.8□□□□□ -0.52
VPS52-216ENST00000471309 VSIG10Q8N0Z9 540 aa11.8□□□□□ -0.52
VPS52-216ENST00000471309 DNAAF4Q8WXU2 420 aa11.8□□□□□ -0.52
VPS52-216ENST00000471309 MEIS3Q99687 375 aa11.8□□□□□ -0.52
VPS52-216ENST00000471309 SRCIN1Q9C0H9 1055 aa11.8□□□□□ -0.52
VPS52-216ENST00000471309 C1orf115Q9H7X2 142 aa11.8□□□□□ -0.52
VPS52-216ENST00000471309 TSHZ2Q9NRE2 1034 aa11.8□□□□□ -0.52
VPS52-216ENST00000471309 USP16Q9Y5T5 823 aa11.8□□□□□ -0.52
VPS52-216ENST00000471309 ZNF831Q5JPB2 1677 aa11.8□□□□□ -0.52
VPS52-216ENST00000471309 NHSQ6T4R5 1651 aa11.79□□□□□ -0.52
VPS52-216ENST00000471309 PI4KAP2A4QPH2 592 aa11.79□□□□□ -0.52
VPS52-216ENST00000471309 GNAI3P08754 354 aa11.79□□□□□ -0.52
VPS52-216ENST00000471309 LRP10Q7Z4F1 713 aa11.79□□□□□ -0.52
VPS52-216ENST00000471309 RPAP2Q8IXW5 612 aaPredicted RBP11.79□□□□□ -0.52
VPS52-216ENST00000471309 PI4KAP1Q8N8J0 262 aa11.79□□□□□ -0.52
VPS52-216ENST00000471309 MARCH10Q8NA82 808 aaPredicted RBP11.79□□□□□ -0.52
VPS52-216ENST00000471309 ATG3Q9NT62 314 aa11.79□□□□□ -0.52
VPS52-216ENST00000471309 RREB1Q92766 1687 aa11.78□□□□□ -0.52
VPS52-216ENST00000471309 FAM98CQ17RN3 349 aaKnown RBP11.78□□□□□ -0.52
VPS52-216ENST00000471309 BEND3Q5T5X7 828 aa11.78□□□□□ -0.52
VPS52-216ENST00000471309 CEP85Q6P2H3 762 aa11.78□□□□□ -0.52
VPS52-216ENST00000471309 ANKRD44Q8N8A2 993 aa11.78□□□□□ -0.52
VPS52-216ENST00000471309 GCC1Q96CN9 775 aa11.78□□□□□ -0.52
VPS52-216ENST00000471309 TEX13AQ9BXU3 409 aaPredicted RBP11.78□□□□□ -0.52
VPS52-216ENST00000471309 AFF2P51816 1311 aa11.78□□□□□ -0.52
VPS52-216ENST00000471309 PTCD1O75127 700 aaKnown RBP11.77□□□□□ -0.53
VPS52-216ENST00000471309 ALDH1L1O75891 902 aa11.77□□□□□ -0.53
VPS52-216ENST00000471309 GNAI2P04899 355 aa11.77□□□□□ -0.53
VPS52-216ENST00000471309 SIRT2Q8IXJ6 389 aa11.77□□□□□ -0.53
VPS52-216ENST00000471309 ASAP1Q9ULH1 1129 aa11.77□□□□□ -0.53
VPS52-216ENST00000471309 MAP3K2Q9Y2U5 619 aa11.77□□□□□ -0.53
VPS52-216ENST00000471309 MYL6BP14649 208 aa11.76□□□□□ -0.53
VPS52-216ENST00000471309 PRIM1P49642 420 aaKnown RBP11.76□□□□□ -0.53
VPS52-216ENST00000471309 SKAP1Q86WV1 359 aa11.76□□□□□ -0.53
VPS52-216ENST00000471309 LINS1Q8NG48 757 aa11.76□□□□□ -0.53
VPS52-216ENST00000471309 XAGE3Q8WTP9 111 aa11.76□□□□□ -0.53
VPS52-216ENST00000471309 USP44Q9H0E7 712 aa11.76□□□□□ -0.53
VPS52-216ENST00000471309 PDZRN3Q9UPQ7 1066 aa11.76□□□□□ -0.53
VPS52-216ENST00000471309 AFDNP55196 1824 aaKnown RBP11.76□□□□□ -0.53
VPS52-216ENST00000471309 COL5A3P25940 1745 aaPredicted RBP11.75□□□□□ -0.53
VPS52-216ENST00000471309 NBPF26B4DH59 902 aa11.75□□□□□ -0.53
VPS52-216ENST00000471309 UBTFL1P0CB47 393 aaPredicted RBP11.75□□□□□ -0.53
VPS52-216ENST00000471309 NBPF14Q5TI25 921 aa11.75□□□□□ -0.53
VPS52-216ENST00000471309 NBPF10Q6P3W6 841 aaKnown RBP11.75□□□□□ -0.53
VPS52-216ENST00000471309 COPS6Q7L5N1 327 aa11.75□□□□□ -0.53
VPS52-216ENST00000471309 NBPF15Q8N660 670 aa11.75□□□□□ -0.53
VPS52-216ENST00000471309 SYTL4Q96C24 671 aaPredicted RBP11.75□□□□□ -0.53
VPS52-216ENST00000471309 GJD4Q96KN9 370 aaPredicted RBP11.75□□□□□ -0.53
VPS52-216ENST00000471309 TRPC5Q9UL62 973 aaPredicted RBP11.75□□□□□ -0.53
VPS52-216ENST00000471309 HMMRO75330 724 aa11.74□□□□□ -0.53
VPS52-216ENST00000471309 NUCB1Q02818 461 aa11.74□□□□□ -0.53
VPS52-216ENST00000471309 AIMP1Q12904 312 aaKnown RBP11.74□□□□□ -0.53
VPS52-216ENST00000471309 RIC3Q7Z5B4 369 aa11.74□□□□□ -0.53
VPS52-216ENST00000471309 METTL22Q9BUU2 404 aaPredicted RBP11.74□□□□□ -0.53
VPS52-216ENST00000471309 UTYO14607 1347 aa11.73□□□□□ -0.53
VPS52-216ENST00000471309 BTAF1O14981 1849 aa11.73□□□□□ -0.53
VPS52-216ENST00000471309 ONECUT3O60422 494 aaPredicted RBP11.73□□□□□ -0.53
VPS52-216ENST00000471309 STARD3NLO95772 234 aa11.73□□□□□ -0.53
VPS52-216ENST00000471309 RGS3P49796 1198 aa11.73□□□□□ -0.53
VPS52-216ENST00000471309 NEXNQ0ZGT2 675 aa11.73□□□□□ -0.53
VPS52-216ENST00000471309 ANKRD13DQ6ZTN6 518 aa11.73□□□□□ -0.53
VPS52-216ENST00000471309 DNAJC10Q8IXB1 793 aa11.73□□□□□ -0.53
VPS52-216ENST00000471309 PLBD2Q8NHP8 589 aa11.73□□□□□ -0.53
VPS52-216ENST00000471309 RBM42Q9BTD8 480 aaKnown RBP11.73□□□□□ -0.53
VPS52-216ENST00000471309 DCTPP1Q9H773 170 aa11.73□□□□□ -0.53
VPS52-216ENST00000471309 HDAC5Q9UQL6 1122 aa11.73□□□□□ -0.53
VPS52-216ENST00000471309 ANKRD36CQ5JPF3 1778 aa11.72□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 69.1 ms