RNA–Protein interactions for RNA: ENST00000471260.1

HMGN1-211, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 3

Gene HMGN1, Length 615 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-211ENST00000471260 NARFQ9UHQ1 456 aa17.96■□□□□ 0.47
HMGN1-211ENST00000471260 ZBTB1Q9Y2K1 713 aa17.96■□□□□ 0.47
HMGN1-211ENST00000471260 C10orf71Q711Q0 1435 aa17.96■□□□□ 0.47
HMGN1-211ENST00000471260 COL15A1P39059 1388 aa17.95■□□□□ 0.46
HMGN1-211ENST00000471260 SIPA1L3O60292 1781 aaPredicted RBP17.95■□□□□ 0.46
HMGN1-211ENST00000471260 PNNQ9H307 717 aaKnown RBP17.95■□□□□ 0.46
HMGN1-211ENST00000471260 A0A087WZG4 1122 aa17.94■□□□□ 0.46
HMGN1-211ENST00000471260 TM4SF1P30408 202 aa17.94■□□□□ 0.46
HMGN1-211ENST00000471260 RALBP1Q15311 655 aa17.94■□□□□ 0.46
HMGN1-211ENST00000471260 USPL1Q5W0Q7 1092 aa17.94■□□□□ 0.46
HMGN1-211ENST00000471260 PXDNLA1KZ92 1463 aa17.94■□□□□ 0.46
HMGN1-211ENST00000471260 EIF5P55010 431 aaKnown RBP17.93■□□□□ 0.46
HMGN1-211ENST00000471260 CANXP27824 592 aaKnown RBP17.92■□□□□ 0.46
HMGN1-211ENST00000471260 POLRMTO00411 1230 aaKnown RBP17.91■□□□□ 0.46
HMGN1-211ENST00000471260 IL6STP40189 918 aaPredicted RBP17.91■□□□□ 0.46
HMGN1-211ENST00000471260 DDR1Q08345 913 aa17.91■□□□□ 0.46
HMGN1-211ENST00000471260 A0A0G2JLW4 131 aa17.9■□□□□ 0.46
HMGN1-211ENST00000471260 MCM10Q7L590 875 aa17.9■□□□□ 0.46
HMGN1-211ENST00000471260 DPEP1P16444 411 aa17.89■□□□□ 0.45
HMGN1-211ENST00000471260 NPM2Q86SE8 214 aaKnown RBP17.89■□□□□ 0.45
HMGN1-211ENST00000471260 PLEKHF1Q96S99 279 aa17.89■□□□□ 0.45
HMGN1-211ENST00000471260 KIAA1551Q9HCM1 1747 aa17.89■□□□□ 0.45
HMGN1-211ENST00000471260 ZNF316A6NFI3 1004 aaPredicted RBP17.88■□□□□ 0.45
HMGN1-211ENST00000471260 SNRPA1P09661 255 aaKnown RBP17.88■□□□□ 0.45
HMGN1-211ENST00000471260 NFIXQ14938 502 aa17.88■□□□□ 0.45
HMGN1-211ENST00000471260 TAF7Q15545 349 aaPredicted RBP17.88■□□□□ 0.45
HMGN1-211ENST00000471260 DIEXFQ68CQ4 756 aaKnown RBP17.88■□□□□ 0.45
HMGN1-211ENST00000471260 BCL2L12Q9HB09 334 aa17.88■□□□□ 0.45
HMGN1-211ENST00000471260 PIM2Q9P1W9 311 aa17.88■□□□□ 0.45
HMGN1-211ENST00000471260 BCS1LQ9Y276 419 aa17.88■□□□□ 0.45
HMGN1-211ENST00000471260 KCNQ3O43525 872 aa17.87■□□□□ 0.45
HMGN1-211ENST00000471260 KCNA3P22001 575 aa17.87■□□□□ 0.45
HMGN1-211ENST00000471260 DDX10Q13206 875 aaKnown RBP17.87■□□□□ 0.45
HMGN1-211ENST00000471260 PNISRQ8TF01 805 aaKnown RBP17.87■□□□□ 0.45
HMGN1-211ENST00000471260 WWC3Q9ULE0 1092 aa17.87■□□□□ 0.45
HMGN1-211ENST00000471260 N4BP2Q86UW6 1770 aaPredicted RBP17.86■□□□□ 0.45
HMGN1-211ENST00000471260 DCTN1Q14203 1278 aa17.86■□□□□ 0.45
HMGN1-211ENST00000471260 USP16Q9Y5T5 823 aa17.86■□□□□ 0.45
HMGN1-211ENST00000471260 ADCY9O60503 1353 aa17.85■□□□□ 0.45
HMGN1-211ENST00000471260 A1BGP04217 495 aa17.85■□□□□ 0.45
HMGN1-211ENST00000471260 SERPINB2P05120 415 aa17.85■□□□□ 0.45
HMGN1-211ENST00000471260 NFE2L2Q16236 605 aa17.85■□□□□ 0.45
HMGN1-211ENST00000471260 MAPK8IP3Q9UPT6 1336 aa17.85■□□□□ 0.45
HMGN1-211ENST00000471260 MYBBP1AQ9BQG0 1328 aaKnown RBP17.84■□□□□ 0.45
HMGN1-211ENST00000471260 GIGYF1O75420 1035 aaPredicted RBP17.84■□□□□ 0.45
HMGN1-211ENST00000471260 BRCA1P38398 1863 aaKnown RBP17.84■□□□□ 0.45
HMGN1-211ENST00000471260 NRXN2Q9P2S2 1712 aa17.84■□□□□ 0.45
HMGN1-211ENST00000471260 C1QTNF8P60827 252 aa17.83■□□□□ 0.44
HMGN1-211ENST00000471260 DALRD3Q5D0E6 543 aaKnown RBP17.83■□□□□ 0.44
HMGN1-211ENST00000471260 ZNF330Q9Y3S2 320 aaPredicted RBP17.83■□□□□ 0.44
HMGN1-211ENST00000471260 ATP10DQ9P241 1426 aa17.82■□□□□ 0.44
HMGN1-211ENST00000471260 RGL2O15211 777 aa17.82■□□□□ 0.44
HMGN1-211ENST00000471260 PDZRN3Q9UPQ7 1066 aa17.82■□□□□ 0.44
HMGN1-211ENST00000471260 TBC1D2BQ9UPU7 963 aa17.82■□□□□ 0.44
HMGN1-211ENST00000471260 TBC1D9BQ66K14 1250 aa17.81■□□□□ 0.44
HMGN1-211ENST00000471260 CLEC4GQ6UXB4 293 aa17.81■□□□□ 0.44
HMGN1-211ENST00000471260 ARHGAP27Q6ZUM4 889 aa17.81■□□□□ 0.44
HMGN1-211ENST00000471260 GPBP1L1Q9HC44 474 aaPredicted RBP17.81■□□□□ 0.44
HMGN1-211ENST00000471260 DLG5Q8TDM6 1919 aa17.8■□□□□ 0.44
HMGN1-211ENST00000471260 AFDNP55196 1824 aaKnown RBP17.8■□□□□ 0.44
HMGN1-211ENST00000471260 ARFGEF1Q9Y6D6 1849 aa17.8■□□□□ 0.44
HMGN1-211ENST00000471260 CAMTA2O94983 1202 aa17.8■□□□□ 0.44
HMGN1-211ENST00000471260 CHRNA5P30532 468 aa17.8■□□□□ 0.44
HMGN1-211ENST00000471260 DZIP3Q86Y13 1208 aaKnown RBP17.8■□□□□ 0.44
HMGN1-211ENST00000471260 CARMIL3Q8ND23 1372 aa17.79■□□□□ 0.44
HMGN1-211ENST00000471260 PRAMEF22A3QJZ6 481 aa17.79■□□□□ 0.44
HMGN1-211ENST00000471260 BICDL1Q6ZP65 573 aa17.79■□□□□ 0.44
HMGN1-211ENST00000471260 SETDB2Q96T68 719 aa17.79■□□□□ 0.44
HMGN1-211ENST00000471260 SCN7AQ01118 1682 aa17.79■□□□□ 0.44
HMGN1-211ENST00000471260 LMOD3Q0VAK6 560 aa17.78■□□□□ 0.44
HMGN1-211ENST00000471260 MIS18AQ9NYP9 233 aa17.78■□□□□ 0.44
HMGN1-211ENST00000471260 ZNF652Q9Y2D9 606 aa17.78■□□□□ 0.44
HMGN1-211ENST00000471260 H0YIN7 160 aa17.77■□□□□ 0.44
HMGN1-211ENST00000471260 CENPBP07199 599 aaPredicted RBP17.77■□□□□ 0.44
HMGN1-211ENST00000471260 PDE6BP35913 854 aa17.77■□□□□ 0.44
HMGN1-211ENST00000471260 BRIP1Q9BX63 1249 aa17.77■□□□□ 0.44
HMGN1-211ENST00000471260 BABAM1Q9NWV8 329 aa17.77■□□□□ 0.44
HMGN1-211ENST00000471260 RIPK4P57078 832 aa17.76■□□□□ 0.43
HMGN1-211ENST00000471260 EIF4A1P60842 406 aaKnown RBP17.76■□□□□ 0.43
HMGN1-211ENST00000471260 NBPF26B4DH59 902 aa17.75■□□□□ 0.43
HMGN1-211ENST00000471260 TMPOP42166 694 aaKnown RBP17.75■□□□□ 0.43
HMGN1-211ENST00000471260 PRR5LQ6MZQ0 368 aa17.75■□□□□ 0.43
HMGN1-211ENST00000471260 NBPF10Q6P3W6 841 aaKnown RBP17.75■□□□□ 0.43
HMGN1-211ENST00000471260 C2CD5Q86YS7 1000 aa17.75■□□□□ 0.43
HMGN1-211ENST00000471260 NBPF15Q8N660 670 aa17.75■□□□□ 0.43
HMGN1-211ENST00000471260 TTLL6Q8N841 843 aa17.75■□□□□ 0.43
HMGN1-211ENST00000471260 KDM3BQ7LBC6 1761 aa17.74■□□□□ 0.43
HMGN1-211ENST00000471260 PIP4K2AP48426 406 aaPredicted RBP17.74■□□□□ 0.43
HMGN1-211ENST00000471260 WDR43Q15061 677 aaKnown RBP eCLIP17.74■□□□□ 0.43
HMGN1-211ENST00000471260 CNBD1Q8NA66 436 aa17.74■□□□□ 0.43
HMGN1-211ENST00000471260 THUMPD2Q9BTF0 503 aaKnown RBP17.74■□□□□ 0.43
HMGN1-211ENST00000471260 PRKRIP1Q9H875 184 aaPredicted RBP17.74■□□□□ 0.43
HMGN1-211ENST00000471260 BCORQ6W2J9 1755 aa17.74■□□□□ 0.43
HMGN1-211ENST00000471260 ST5P78524 1137 aa17.73■□□□□ 0.43
HMGN1-211ENST00000471260 TSPYL4Q9UJ04 414 aa17.73■□□□□ 0.43
HMGN1-211ENST00000471260 DLEC1Q9Y238 1755 aa17.73■□□□□ 0.43
HMGN1-211ENST00000471260 LAMB4A4D0S4 1761 aa17.72■□□□□ 0.43
HMGN1-211ENST00000471260 NPHP1O15259 732 aa17.72■□□□□ 0.43
HMGN1-211ENST00000471260 C9orf131Q5VYM1 1079 aa17.72■□□□□ 0.43
HMGN1-211ENST00000471260 ZNF526Q8TF50 670 aaPredicted RBP17.72■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 55.9 ms