RNA–Protein interactions for RNA: ENST00000471037.1

SF3A1-206, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 3

Gene SF3A1, Length 555 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-206ENST00000471037 COL15A1P39059 1388 aa12.26□□□□□ -0.45
SF3A1-206ENST00000471037 WDR90Q96KV7 1748 aa12.25□□□□□ -0.45
SF3A1-206ENST00000471037 USPL1Q5W0Q7 1092 aa12.25□□□□□ -0.45
SF3A1-206ENST00000471037 VSIG10Q8N0Z9 540 aa12.25□□□□□ -0.45
SF3A1-206ENST00000471037 NARFQ9UHQ1 456 aa12.25□□□□□ -0.45
SF3A1-206ENST00000471037 KDM2BQ8NHM5 1336 aa12.25□□□□□ -0.45
SF3A1-206ENST00000471037 ZC3H4Q9UPT8 1303 aaKnown RBP12.25□□□□□ -0.45
SF3A1-206ENST00000471037 TNRC6CQ9HCJ0 1690 aaKnown RBP12.25□□□□□ -0.45
SF3A1-206ENST00000471037 UBR2Q8IWV8 1755 aa12.25□□□□□ -0.45
SF3A1-206ENST00000471037 FSTL1Q12841 308 aa12.24□□□□□ -0.45
SF3A1-206ENST00000471037 SLC39A6Q13433 755 aa12.24□□□□□ -0.45
SF3A1-206ENST00000471037 NFIXQ14938 502 aa12.24□□□□□ -0.45
SF3A1-206ENST00000471037 RNF181Q9P0P0 153 aa12.24□□□□□ -0.45
SF3A1-206ENST00000471037 DLEC1Q9Y238 1755 aa12.24□□□□□ -0.45
SF3A1-206ENST00000471037 ZBTB1Q9Y2K1 713 aa12.24□□□□□ -0.45
SF3A1-206ENST00000471037 AFDNP55196 1824 aaKnown RBP12.23□□□□□ -0.45
SF3A1-206ENST00000471037 VIRMAQ69YN4 1812 aaKnown RBP12.23□□□□□ -0.45
SF3A1-206ENST00000471037 HMOX1P09601 288 aa12.23□□□□□ -0.45
SF3A1-206ENST00000471037 MTHFSDQ2M296 383 aaKnown RBP12.23□□□□□ -0.45
SF3A1-206ENST00000471037 BCL2L12Q9HB09 334 aa12.23□□□□□ -0.45
SF3A1-206ENST00000471037 SBF1O95248 1867 aa12.23□□□□□ -0.45
SF3A1-206ENST00000471037 PER1O15534 1290 aaPredicted RBP12.22□□□□□ -0.45
SF3A1-206ENST00000471037 DIAPH1O60610 1272 aaKnown RBP12.22□□□□□ -0.45
SF3A1-206ENST00000471037 C16orf71Q8IYS4 520 aaPredicted RBP12.22□□□□□ -0.45
SF3A1-206ENST00000471037 COL3A1P02461 1466 aaPredicted RBP12.21□□□□□ -0.45
SF3A1-206ENST00000471037 SERPINB2P05120 415 aa12.21□□□□□ -0.45
SF3A1-206ENST00000471037 NPC1L1Q9UHC9 1359 aa12.2□□□□□ -0.46
SF3A1-206ENST00000471037 LMNB1P20700 586 aa12.2□□□□□ -0.46
SF3A1-206ENST00000471037 KLRG1Q96E93 195 aa12.2□□□□□ -0.46
SF3A1-206ENST00000471037 RRAGCQ9HB90 399 aa12.2□□□□□ -0.46
SF3A1-206ENST00000471037 SCN7AQ01118 1682 aa12.19□□□□□ -0.46
SF3A1-206ENST00000471037 CARMIL3Q8ND23 1372 aa12.19□□□□□ -0.46
SF3A1-206ENST00000471037 STARD3NLO95772 234 aa12.19□□□□□ -0.46
SF3A1-206ENST00000471037 EIF5P55010 431 aaKnown RBP12.19□□□□□ -0.46
SF3A1-206ENST00000471037 RASSF7Q02833 373 aa12.19□□□□□ -0.46
SF3A1-206ENST00000471037 DDX10Q13206 875 aaKnown RBP12.19□□□□□ -0.46
SF3A1-206ENST00000471037 TTC5Q8N0Z6 440 aa12.19□□□□□ -0.46
SF3A1-206ENST00000471037 TTLL6Q8N841 843 aa12.19□□□□□ -0.46
SF3A1-206ENST00000471037 JMYQ8N9B5 988 aa12.19□□□□□ -0.46
SF3A1-206ENST00000471037 HEG1Q9ULI3 1381 aa12.18□□□□□ -0.46
SF3A1-206ENST00000471037 SIPA1L3O60292 1781 aaPredicted RBP12.18□□□□□ -0.46
SF3A1-206ENST00000471037 A0A087WZG4 1122 aa12.18□□□□□ -0.46
SF3A1-206ENST00000471037 CANXP27824 592 aaKnown RBP12.18□□□□□ -0.46
SF3A1-206ENST00000471037 PRELPP51888 382 aa12.18□□□□□ -0.46
SF3A1-206ENST00000471037 SMC1BQ8NDV3 1235 aa12.18□□□□□ -0.46
SF3A1-206ENST00000471037 TIAM2Q8IVF5 1701 aa12.17□□□□□ -0.46
SF3A1-206ENST00000471037 GLTPD2A6NH11 291 aa12.17□□□□□ -0.46
SF3A1-206ENST00000471037 H0YIN7 160 aa12.17□□□□□ -0.46
SF3A1-206ENST00000471037 NFKBIEO00221 500 aa12.17□□□□□ -0.46
SF3A1-206ENST00000471037 CC2D1BQ5T0F9 858 aaKnown RBP12.17□□□□□ -0.46
SF3A1-206ENST00000471037 ZNF790Q6PG37 636 aa12.17□□□□□ -0.46
SF3A1-206ENST00000471037 C2CD5Q86YS7 1000 aa12.17□□□□□ -0.46
SF3A1-206ENST00000471037 GAS2L2Q8NHY3 880 aa12.17□□□□□ -0.46
SF3A1-206ENST00000471037 ZNF496Q96IT1 587 aaPredicted RBP12.17□□□□□ -0.46
SF3A1-206ENST00000471037 TEX13AQ9BXU3 409 aaPredicted RBP12.17□□□□□ -0.46
SF3A1-206ENST00000471037 PDZRN3Q9UPQ7 1066 aa12.17□□□□□ -0.46
SF3A1-206ENST00000471037 CEMIPQ8WUJ3 1361 aa12.17□□□□□ -0.46
SF3A1-206ENST00000471037 GNAT3A8MTJ3 354 aa12.16□□□□□ -0.46
SF3A1-206ENST00000471037 IL6STP40189 918 aaPredicted RBP12.16□□□□□ -0.46
SF3A1-206ENST00000471037 HTRA3P83110 453 aa12.16□□□□□ -0.46
SF3A1-206ENST00000471037 TEFQ10587 303 aa12.16□□□□□ -0.46
SF3A1-206ENST00000471037 DIEXFQ68CQ4 756 aaKnown RBP12.16□□□□□ -0.46
SF3A1-206ENST00000471037 IL17REQ8NFR9 667 aa12.16□□□□□ -0.46
SF3A1-206ENST00000471037 ANKRD31Q8N7Z5 1873 aa12.16□□□□□ -0.46
SF3A1-206ENST00000471037 VEGFAP15692 232 aaPredicted RBP12.15□□□□□ -0.46
SF3A1-206ENST00000471037 TBC1D9BQ66K14 1250 aa12.15□□□□□ -0.46
SF3A1-206ENST00000471037 BRIP1Q9BX63 1249 aa12.15□□□□□ -0.46
SF3A1-206ENST00000471037 COL11A2P13942 1736 aaPredicted RBP12.14□□□□□ -0.47
SF3A1-206ENST00000471037 U2SURPO15042 1029 aaKnown RBP12.14□□□□□ -0.47
SF3A1-206ENST00000471037 PDE6BP35913 854 aa12.14□□□□□ -0.47
SF3A1-206ENST00000471037 PRR5LQ6MZQ0 368 aa12.14□□□□□ -0.47
SF3A1-206ENST00000471037 BICDL1Q6ZP65 573 aa12.14□□□□□ -0.47
SF3A1-206ENST00000471037 BCORQ6W2J9 1755 aa12.13□□□□□ -0.47
SF3A1-206ENST00000471037 FMNL2Q96PY5 1086 aa12.13□□□□□ -0.47
SF3A1-206ENST00000471037 LTBP3Q9NS15 1303 aa12.12□□□□□ -0.47
SF3A1-206ENST00000471037 FER1L6Q2WGJ9 1857 aa12.12□□□□□ -0.47
SF3A1-206ENST00000471037 CAMTA2O94983 1202 aa12.12□□□□□ -0.47
SF3A1-206ENST00000471037 TBC1D2BQ9UPU7 963 aa12.12□□□□□ -0.47
SF3A1-206ENST00000471037 CCDC88AQ3V6T2 1871 aa12.11□□□□□ -0.47
SF3A1-206ENST00000471037 POTECB2RU33 542 aa12.11□□□□□ -0.47
SF3A1-206ENST00000471037 A1BGP04217 495 aa12.11□□□□□ -0.47
SF3A1-206ENST00000471037 DPY19L2Q6NUT2 758 aa12.11□□□□□ -0.47
SF3A1-206ENST00000471037 CNBD1Q8NA66 436 aa12.11□□□□□ -0.47
SF3A1-206ENST00000471037 ZNF622Q969S3 477 aaKnown RBP eCLIP12.11□□□□□ -0.47
SF3A1-206ENST00000471037 ZNF330Q9Y3S2 320 aaPredicted RBP12.11□□□□□ -0.47
SF3A1-206ENST00000471037 DICER1Q9UPY3 1922 aaKnown RBP12.11□□□□□ -0.47
SF3A1-206ENST00000471037 ARFGEF2Q9Y6D5 1785 aa12.1□□□□□ -0.47
SF3A1-206ENST00000471037 BTBD11A6QL63 1104 aa12.1□□□□□ -0.47
SF3A1-206ENST00000471037 C21orf2O43822 256 aa12.1□□□□□ -0.47
SF3A1-206ENST00000471037 NPM2Q86SE8 214 aaKnown RBP12.1□□□□□ -0.47
SF3A1-206ENST00000471037 CNKSR1Q969H4 720 aa12.1□□□□□ -0.47
SF3A1-206ENST00000471037 PHACTR3Q96KR7 559 aa12.1□□□□□ -0.47
SF3A1-206ENST00000471037 SETDB2Q96T68 719 aa12.1□□□□□ -0.47
SF3A1-206ENST00000471037 RSPH6AQ9H0K4 717 aa12.1□□□□□ -0.47
SF3A1-206ENST00000471037 KCNQ3O43525 872 aa12.09□□□□□ -0.47
SF3A1-206ENST00000471037 SRGNP10124 158 aa12.09□□□□□ -0.47
SF3A1-206ENST00000471037 PRKAR2BP31323 418 aa12.09□□□□□ -0.47
SF3A1-206ENST00000471037 ST5P78524 1137 aa12.09□□□□□ -0.47
SF3A1-206ENST00000471037 ERFEQ4G0M1 354 aa12.09□□□□□ -0.47
SF3A1-206ENST00000471037 COL13A1Q5TAT6 717 aaPredicted RBP12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms