RNA–Protein interactions for RNA: ENST00000470588.1

SMARCD3-206, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3, humanhuman

TSL 2

Gene SMARCD3, Length 1,755 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD3-206ENST00000470588 BECN1Q14457 450 aa21.04■□□□□ 0.96
SMARCD3-206ENST00000470588 SRCIN1Q9C0H9 1055 aa21.04■□□□□ 0.96
SMARCD3-206ENST00000470588 USP44Q9H0E7 712 aa21.04■□□□□ 0.96
SMARCD3-206ENST00000470588 N4BP2Q86UW6 1770 aaPredicted RBP21.04■□□□□ 0.96
SMARCD3-206ENST00000470588 SHANK3Q9BYB0 1731 aa21.04■□□□□ 0.96
SMARCD3-206ENST00000470588 EIF5BO60841 1220 aaKnown RBP21.03■□□□□ 0.96
SMARCD3-206ENST00000470588 CABP4P57796 275 aa21.02■□□□□ 0.96
SMARCD3-206ENST00000470588 DNAAF4Q8WXU2 420 aa21.02■□□□□ 0.96
SMARCD3-206ENST00000470588 C22orf23Q9BZE7 217 aa21.02■□□□□ 0.96
SMARCD3-206ENST00000470588 MFAP1P55081 439 aaKnown RBP21.02■□□□□ 0.96
SMARCD3-206ENST00000470588 UBTFL1P0CB47 393 aaPredicted RBP21.01■□□□□ 0.95
SMARCD3-206ENST00000470588 SLC4A3P48751 1232 aa21.01■□□□□ 0.95
SMARCD3-206ENST00000470588 HYPKQ9NX55 129 aa21.01■□□□□ 0.95
SMARCD3-206ENST00000470588 PI4KAP2A4QPH2 592 aa21■□□□□ 0.95
SMARCD3-206ENST00000470588 ZNF790Q6PG37 636 aa21■□□□□ 0.95
SMARCD3-206ENST00000470588 TTC5Q8N0Z6 440 aa21■□□□□ 0.95
SMARCD3-206ENST00000470588 PI4KAP1Q8N8J0 262 aa21■□□□□ 0.95
SMARCD3-206ENST00000470588 NFATC2IPQ8NCF5 419 aa21■□□□□ 0.95
SMARCD3-206ENST00000470588 BEND3Q5T5X7 828 aa21■□□□□ 0.95
SMARCD3-206ENST00000470588 C16orf71Q8IYS4 520 aaPredicted RBP21■□□□□ 0.95
SMARCD3-206ENST00000470588 ERVV-2B6SEH9 535 aa20.99■□□□□ 0.95
SMARCD3-206ENST00000470588 NKX1-1Q15270 411 aaPredicted RBP20.99■□□□□ 0.95
SMARCD3-206ENST00000470588 TTC22Q5TAA0 569 aa20.99■□□□□ 0.95
SMARCD3-206ENST00000470588 DDX54Q8TDD1 881 aaKnown RBP20.99■□□□□ 0.95
SMARCD3-206ENST00000470588 CDCA7Q9BWT1 371 aaPredicted RBP20.99■□□□□ 0.95
SMARCD3-206ENST00000470588 DISP2A7MBM2 1401 aa20.98■□□□□ 0.95
SMARCD3-206ENST00000470588 LRRFIP2Q9Y608 721 aaKnown RBP20.98■□□□□ 0.95
SMARCD3-206ENST00000470588 KSR2Q6VAB6 950 aa20.97■□□□□ 0.95
SMARCD3-206ENST00000470588 DDX21Q9NR30 783 aaKnown RBP eCLIP20.97■□□□□ 0.95
SMARCD3-206ENST00000470588 THRAP3Q9Y2W1 955 aaKnown RBP20.97■□□□□ 0.95
SMARCD3-206ENST00000470588 SMARCA5O60264 1052 aaPredicted RBP20.97■□□□□ 0.95
SMARCD3-206ENST00000470588 CDC45O75419 566 aa20.97■□□□□ 0.95
SMARCD3-206ENST00000470588 ALDH1L1O75891 902 aa20.97■□□□□ 0.95
SMARCD3-206ENST00000470588 SPATA31A6Q5VVP1 1343 aa20.96■□□□□ 0.95
SMARCD3-206ENST00000470588 HDAC5Q9UQL6 1122 aa20.96■□□□□ 0.95
SMARCD3-206ENST00000470588 SLIT2O94813 1529 aa20.96■□□□□ 0.95
SMARCD3-206ENST00000470588 ADCY9O60503 1353 aa20.95■□□□□ 0.95
SMARCD3-206ENST00000470588 PNMA6EA0A0J9YXQ4 647 aa20.95■□□□□ 0.94
SMARCD3-206ENST00000470588 ANXA1P04083 346 aa20.95■□□□□ 0.94
SMARCD3-206ENST00000470588 GSPT1P15170 499 aaKnown RBP20.95■□□□□ 0.94
SMARCD3-206ENST00000470588 RBM25P49756 843 aaKnown RBP20.95■□□□□ 0.94
SMARCD3-206ENST00000470588 TBC1D9Q6ZT07 1266 aa20.95■□□□□ 0.94
SMARCD3-206ENST00000470588 SSH3Q8TE77 659 aa20.95■□□□□ 0.94
SMARCD3-206ENST00000470588 OSBPL3Q9H4L5 887 aa20.95■□□□□ 0.94
SMARCD3-206ENST00000470588 APBB1O00213 710 aa20.95■□□□□ 0.94
SMARCD3-206ENST00000470588 DDX58O95786 925 aaKnown RBP20.95■□□□□ 0.94
SMARCD3-206ENST00000470588 SLC39A6Q13433 755 aa20.95■□□□□ 0.94
SMARCD3-206ENST00000470588 PRAMEF22A3QJZ6 481 aa20.94■□□□□ 0.94
SMARCD3-206ENST00000470588 FMNL2Q96PY5 1086 aa20.94■□□□□ 0.94
SMARCD3-206ENST00000470588 LRRCC1Q9C099 1032 aa20.94■□□□□ 0.94
SMARCD3-206ENST00000470588 SPATA31A1Q5TZJ5 1347 aa20.94■□□□□ 0.94
SMARCD3-206ENST00000470588 EXOC5O00471 708 aa20.93■□□□□ 0.94
SMARCD3-206ENST00000470588 MAP3K2Q9Y2U5 619 aa20.93■□□□□ 0.94
SMARCD3-206ENST00000470588 CCDC9Q9Y3X0 531 aaKnown RBP20.93■□□□□ 0.94
SMARCD3-206ENST00000470588 TNS2Q63HR2 1409 aa20.93■□□□□ 0.94
SMARCD3-206ENST00000470588 RAB11FIP3O75154 756 aa20.92■□□□□ 0.94
SMARCD3-206ENST00000470588 POLA2Q14181 598 aa20.92■□□□□ 0.94
SMARCD3-206ENST00000470588 NBR1Q14596 966 aa20.92■□□□□ 0.94
SMARCD3-206ENST00000470588 PDIA6Q15084 440 aa20.92■□□□□ 0.94
SMARCD3-206ENST00000470588 PROSER3Q2NL68 480 aa20.92■□□□□ 0.94
SMARCD3-206ENST00000470588 OTUD7AQ8TE49 926 aaPredicted RBP20.92■□□□□ 0.94
SMARCD3-206ENST00000470588 EXOC6BQ9Y2D4 811 aa20.92■□□□□ 0.94
SMARCD3-206ENST00000470588 IBTKQ9P2D0 1353 aaPredicted RBP20.92■□□□□ 0.94
SMARCD3-206ENST00000470588 C5P01031 1676 aa20.92■□□□□ 0.94
SMARCD3-206ENST00000470588 SNRPA1P09661 255 aaKnown RBP20.92■□□□□ 0.94
SMARCD3-206ENST00000470588 PAPPAQ13219 1627 aa20.92■□□□□ 0.94
SMARCD3-206ENST00000470588 NGLY1Q96IV0 654 aa20.91■□□□□ 0.94
SMARCD3-206ENST00000470588 LRP6O75581 1613 aa20.91■□□□□ 0.94
SMARCD3-206ENST00000470588 SPATA31A5Q5VU36 1347 aa20.91■□□□□ 0.94
SMARCD3-206ENST00000470588 SPATA31A7Q8IWB4 1347 aa20.91■□□□□ 0.94
SMARCD3-206ENST00000470588 TOGARAM1Q9Y4F4 1720 aa20.91■□□□□ 0.94
SMARCD3-206ENST00000470588 LAMB4A4D0S4 1761 aa20.91■□□□□ 0.94
SMARCD3-206ENST00000470588 PPP1R42Q7Z4L9 355 aa20.9■□□□□ 0.94
SMARCD3-206ENST00000470588 ZNF496Q96IT1 587 aaPredicted RBP20.9■□□□□ 0.94
SMARCD3-206ENST00000470588 C8orf37Q96NL8 207 aa20.9■□□□□ 0.94
SMARCD3-206ENST00000470588 UBR2Q8IWV8 1755 aa20.9■□□□□ 0.94
SMARCD3-206ENST00000470588 NBPF7P0C2Y1 421 aaPredicted RBP20.9■□□□□ 0.94
SMARCD3-206ENST00000470588 PDE1AP54750 535 aa20.9■□□□□ 0.94
SMARCD3-206ENST00000470588 UNC5CLQ8IV45 518 aa20.9■□□□□ 0.94
SMARCD3-206ENST00000470588 LINS1Q8NG48 757 aa20.9■□□□□ 0.94
SMARCD3-206ENST00000470588 TBC1D2Q9BYX2 928 aa20.9■□□□□ 0.94
SMARCD3-206ENST00000470588 TMOD3Q9NYL9 352 aa20.9■□□□□ 0.94
SMARCD3-206ENST00000470588 SDSP20132 328 aa20.88■□□□□ 0.93
SMARCD3-206ENST00000470588 SALL3Q9BXA9 1300 aa20.87■□□□□ 0.93
SMARCD3-206ENST00000470588 HSP90AB4PQ58FF6 505 aa20.87■□□□□ 0.93
SMARCD3-206ENST00000470588 RTL5Q5HYW3 569 aaPredicted RBP20.87■□□□□ 0.93
SMARCD3-206ENST00000470588 CASC1Q6TDU7 716 aa20.87■□□□□ 0.93
SMARCD3-206ENST00000470588 BCL11AQ9H165 835 aa20.87■□□□□ 0.93
SMARCD3-206ENST00000470588 C9orf78Q9NZ63 289 aaPredicted RBP20.87■□□□□ 0.93
SMARCD3-206ENST00000470588 MTX1Q13505 466 aa20.87■□□□□ 0.93
SMARCD3-206ENST00000470588 DDB1Q16531 1140 aa20.87■□□□□ 0.93
SMARCD3-206ENST00000470588 BARGINQ6ZT62 677 aa20.87■□□□□ 0.93
SMARCD3-206ENST00000470588 STAP2Q9UGK3 403 aa20.87■□□□□ 0.93
SMARCD3-206ENST00000470588 TNKS1BP1Q9C0C2 1729 aaKnown RBP20.87■□□□□ 0.93
SMARCD3-206ENST00000470588 ITGB4P16144 1822 aa20.86■□□□□ 0.93
SMARCD3-206ENST00000470588 MEX3CQ5U5Q3 659 aaKnown RBP20.86■□□□□ 0.93
SMARCD3-206ENST00000470588 UTYO14607 1347 aa20.85■□□□□ 0.93
SMARCD3-206ENST00000470588 SRGAP3O43295 1099 aa20.85■□□□□ 0.93
SMARCD3-206ENST00000470588 SURF6O75683 361 aaKnown RBP20.85■□□□□ 0.93
SMARCD3-206ENST00000470588 RIC3Q7Z5B4 369 aa20.85■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms