RNA–Protein interactions for RNA: ENST00000470076.1

COL7A1-208, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 651 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-208ENST00000470076 NARFQ9UHQ1 456 aa23.48■■□□□ 1.35
COL7A1-208ENST00000470076 ZBTB1Q9Y2K1 713 aa23.48■■□□□ 1.35
COL7A1-208ENST00000470076 ARFGEF1Q9Y6D6 1849 aa23.47■■□□□ 1.35
COL7A1-208ENST00000470076 POLRMTO00411 1230 aaKnown RBP23.47■■□□□ 1.35
COL7A1-208ENST00000470076 KCNA3P22001 575 aa23.47■■□□□ 1.35
COL7A1-208ENST00000470076 IL17REQ8NFR9 667 aa23.47■■□□□ 1.35
COL7A1-208ENST00000470076 PIM2Q9P1W9 311 aa23.47■■□□□ 1.35
COL7A1-208ENST00000470076 SIPA1L3O60292 1781 aaPredicted RBP23.46■■□□□ 1.35
COL7A1-208ENST00000470076 STARD3NLO95772 234 aa23.46■■□□□ 1.35
COL7A1-208ENST00000470076 ARHGAP27Q6ZUM4 889 aa23.46■■□□□ 1.35
COL7A1-208ENST00000470076 ZNF790Q6PG37 636 aa23.45■■□□□ 1.34
COL7A1-208ENST00000470076 NUDCQ9Y266 331 aa23.45■■□□□ 1.34
COL7A1-208ENST00000470076 TEX13AQ9BXU3 409 aaPredicted RBP23.44■■□□□ 1.34
COL7A1-208ENST00000470076 CEP350Q5VT06 3117 aa23.44■■□□□ 1.34
COL7A1-208ENST00000470076 PRKAR2BP31323 418 aa23.43■■□□□ 1.34
COL7A1-208ENST00000470076 DALRD3Q5D0E6 543 aaKnown RBP23.43■■□□□ 1.34
COL7A1-208ENST00000470076 ZNF496Q96IT1 587 aaPredicted RBP23.43■■□□□ 1.34
COL7A1-208ENST00000470076 RSPH6AQ9H0K4 717 aa23.43■■□□□ 1.34
COL7A1-208ENST00000470076 AFDNP55196 1824 aaKnown RBP23.43■■□□□ 1.34
COL7A1-208ENST00000470076 CEMIPQ8WUJ3 1361 aa23.42■■□□□ 1.34
COL7A1-208ENST00000470076 HEG1Q9ULI3 1381 aa23.42■■□□□ 1.34
COL7A1-208ENST00000470076 CANXP27824 592 aaKnown RBP23.42■■□□□ 1.34
COL7A1-208ENST00000470076 NFIXQ14938 502 aa23.42■■□□□ 1.34
COL7A1-208ENST00000470076 PHACTR3Q96KR7 559 aa23.42■■□□□ 1.34
COL7A1-208ENST00000470076 PPP2R1AP30153 589 aa23.41■■□□□ 1.34
COL7A1-208ENST00000470076 BCL2L12Q9HB09 334 aa23.41■■□□□ 1.34
COL7A1-208ENST00000470076 NRXN2Q9P2S2 1712 aa23.41■■□□□ 1.34
COL7A1-208ENST00000470076 A0A087WZG4 1122 aa23.4■■□□□ 1.34
COL7A1-208ENST00000470076 CHRNA5P30532 468 aa23.4■■□□□ 1.34
COL7A1-208ENST00000470076 EIF5P55010 431 aaKnown RBP23.4■■□□□ 1.34
COL7A1-208ENST00000470076 FMNL2Q96PY5 1086 aa23.39■■□□□ 1.33
COL7A1-208ENST00000470076 SERPINB2P05120 415 aa23.38■■□□□ 1.33
COL7A1-208ENST00000470076 U2AF1L5P0DN76 240 aaPredicted RBP23.38■■□□□ 1.33
COL7A1-208ENST00000470076 U2AF1Q01081 240 aaKnown RBP eCLIP23.38■■□□□ 1.33
COL7A1-208ENST00000470076 KIF3CO14782 793 aa23.37■■□□□ 1.33
COL7A1-208ENST00000470076 BTBD11A6QL63 1104 aa23.36■■□□□ 1.33
COL7A1-208ENST00000470076 IL6STP40189 918 aaPredicted RBP23.36■■□□□ 1.33
COL7A1-208ENST00000470076 C9orf131Q5VYM1 1079 aa23.35■■□□□ 1.33
COL7A1-208ENST00000470076 RTF1Q92541 710 aaKnown RBP23.34■■□□□ 1.33
COL7A1-208ENST00000470076 SCN7AQ01118 1682 aa23.34■■□□□ 1.33
COL7A1-208ENST00000470076 DLEC1Q9Y238 1755 aa23.34■■□□□ 1.33
COL7A1-208ENST00000470076 HSPA6P17066 643 aa23.33■■□□□ 1.33
COL7A1-208ENST00000470076 NPM2Q86SE8 214 aaKnown RBP23.33■■□□□ 1.33
COL7A1-208ENST00000470076 BICDL1Q6ZP65 573 aa23.32■■□□□ 1.32
COL7A1-208ENST00000470076 ZNF330Q9Y3S2 320 aaPredicted RBP23.32■■□□□ 1.32
COL7A1-208ENST00000470076 SBF1O95248 1867 aa23.31■■□□□ 1.32
COL7A1-208ENST00000470076 KCNQ3O43525 872 aa23.31■■□□□ 1.32
COL7A1-208ENST00000470076 TBC1D2BQ9UPU7 963 aa23.31■■□□□ 1.32
COL7A1-208ENST00000470076 HTATSF1O43719 755 aaKnown RBP23.3■■□□□ 1.32
COL7A1-208ENST00000470076 A1BGP04217 495 aa23.3■■□□□ 1.32
COL7A1-208ENST00000470076 TBC1D9BQ66K14 1250 aa23.3■■□□□ 1.32
COL7A1-208ENST00000470076 H0YIN7 160 aa23.29■■□□□ 1.32
COL7A1-208ENST00000470076 TOMM70O94826 608 aa23.29■■□□□ 1.32
COL7A1-208ENST00000470076 MCM10Q7L590 875 aa23.29■■□□□ 1.32
COL7A1-208ENST00000470076 C2CD5Q86YS7 1000 aa23.29■■□□□ 1.32
COL7A1-208ENST00000470076 TTLL6Q8N841 843 aa23.29■■□□□ 1.32
COL7A1-208ENST00000470076 RNF181Q9P0P0 153 aa23.29■■□□□ 1.32
COL7A1-208ENST00000470076 CARMIL3Q8ND23 1372 aa23.28■■□□□ 1.32
COL7A1-208ENST00000470076 NMRK2Q9NPI5 230 aa23.28■■□□□ 1.32
COL7A1-208ENST00000470076 PDZRN3Q9UPQ7 1066 aa23.28■■□□□ 1.32
COL7A1-208ENST00000470076 SNRPA1P09661 255 aaKnown RBP23.27■■□□□ 1.32
COL7A1-208ENST00000470076 USP16Q9Y5T5 823 aa23.27■■□□□ 1.32
COL7A1-208ENST00000470076 CAMTA2O94983 1202 aa23.26■■□□□ 1.31
COL7A1-208ENST00000470076 BRIP1Q9BX63 1249 aa23.26■■□□□ 1.31
COL7A1-208ENST00000470076 KDM2BQ8NHM5 1336 aa23.26■■□□□ 1.31
COL7A1-208ENST00000470076 ANKRD31Q8N7Z5 1873 aa23.26■■□□□ 1.31
COL7A1-208ENST00000470076 BCORQ6W2J9 1755 aa23.25■■□□□ 1.31
COL7A1-208ENST00000470076 NEFMP07197 916 aa23.25■■□□□ 1.31
COL7A1-208ENST00000470076 PDE6BP35913 854 aa23.25■■□□□ 1.31
COL7A1-208ENST00000470076 DCTN1Q14203 1278 aa23.25■■□□□ 1.31
COL7A1-208ENST00000470076 DZIP3Q86Y13 1208 aaKnown RBP23.25■■□□□ 1.31
COL7A1-208ENST00000470076 SETDB2Q96T68 719 aa23.25■■□□□ 1.31
COL7A1-208ENST00000470076 PRR5LQ6MZQ0 368 aa23.24■■□□□ 1.31
COL7A1-208ENST00000470076 ZC3H4Q9UPT8 1303 aaKnown RBP23.24■■□□□ 1.31
COL7A1-208ENST00000470076 TAF7Q15545 349 aaPredicted RBP23.23■■□□□ 1.31
COL7A1-208ENST00000470076 PRAMEF22A3QJZ6 481 aa23.22■■□□□ 1.31
COL7A1-208ENST00000470076 LMNB1P20700 586 aa23.22■■□□□ 1.31
COL7A1-208ENST00000470076 RASSF7Q02833 373 aa23.22■■□□□ 1.31
COL7A1-208ENST00000470076 DLG5Q8TDM6 1919 aa23.21■■□□□ 1.31
COL7A1-208ENST00000470076 CLEC4GQ6UXB4 293 aa23.21■■□□□ 1.31
COL7A1-208ENST00000470076 C16orf71Q8IYS4 520 aaPredicted RBP23.21■■□□□ 1.31
COL7A1-208ENST00000470076 CNBD1Q8NA66 436 aa23.21■■□□□ 1.31
COL7A1-208ENST00000470076 TNRC6CQ9HCJ0 1690 aaKnown RBP23.2■■□□□ 1.3
COL7A1-208ENST00000470076 NPHP1O15259 732 aa23.2■■□□□ 1.3
COL7A1-208ENST00000470076 PIP4K2AP48426 406 aaPredicted RBP23.2■■□□□ 1.3
COL7A1-208ENST00000470076 RBM46Q8TBY0 533 aaKnown RBP23.2■■□□□ 1.3
COL7A1-208ENST00000470076 ZNF622Q969S3 477 aaKnown RBP eCLIP23.2■■□□□ 1.3
COL7A1-208ENST00000470076 ZNF652Q9Y2D9 606 aa23.2■■□□□ 1.3
COL7A1-208ENST00000470076 COL11A2P13942 1736 aaPredicted RBP23.19■■□□□ 1.3
COL7A1-208ENST00000470076 APLP1P51693 650 aa23.19■■□□□ 1.3
COL7A1-208ENST00000470076 ST5P78524 1137 aa23.19■■□□□ 1.3
COL7A1-208ENST00000470076 CCDC88AQ3V6T2 1871 aa23.19■■□□□ 1.3
COL7A1-208ENST00000470076 RGL2O15211 777 aa23.18■■□□□ 1.3
COL7A1-208ENST00000470076 CCDC24Q8N4L8 307 aa23.18■■□□□ 1.3
COL7A1-208ENST00000470076 PNISRQ8TF01 805 aaKnown RBP23.18■■□□□ 1.3
COL7A1-208ENST00000470076 NFKBIEO00221 500 aa23.17■■□□□ 1.3
COL7A1-208ENST00000470076 PLEKHF1Q96S99 279 aa23.17■■□□□ 1.3
COL7A1-208ENST00000470076 PNNQ9H307 717 aaKnown RBP23.17■■□□□ 1.3
COL7A1-208ENST00000470076 LAMB4A4D0S4 1761 aa23.17■■□□□ 1.3
COL7A1-208ENST00000470076 NBPF26B4DH59 902 aa23.16■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 172.9 ms