RNA–Protein interactions for RNA: ENST00000469207.5

HDAC3-204, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 829 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-204ENST00000469207 BRCA1P38398 1863 aaKnown RBP16.62■□□□□ 0.25
HDAC3-204ENST00000469207 NARFQ9UHQ1 456 aa16.61■□□□□ 0.25
HDAC3-204ENST00000469207 U2SURPO15042 1029 aaKnown RBP16.6■□□□□ 0.25
HDAC3-204ENST00000469207 TOMM70O94826 608 aa16.6■□□□□ 0.25
HDAC3-204ENST00000469207 BICDL1Q6ZP65 573 aa16.6■□□□□ 0.25
HDAC3-204ENST00000469207 IL17REQ8NFR9 667 aa16.6■□□□□ 0.25
HDAC3-204ENST00000469207 KCPQ6ZWJ8 1503 aa16.6■□□□□ 0.25
HDAC3-204ENST00000469207 SERPINB2P05120 415 aa16.59■□□□□ 0.25
HDAC3-204ENST00000469207 RNF181Q9P0P0 153 aa16.59■□□□□ 0.25
HDAC3-204ENST00000469207 HTRA3P83110 453 aa16.58■□□□□ 0.24
HDAC3-204ENST00000469207 RASSF7Q02833 373 aa16.58■□□□□ 0.24
HDAC3-204ENST00000469207 IFFO2Q5TF58 517 aa16.58■□□□□ 0.24
HDAC3-204ENST00000469207 RRAGCQ9HB90 399 aa16.58■□□□□ 0.24
HDAC3-204ENST00000469207 COL15A1P39059 1388 aa16.58■□□□□ 0.24
HDAC3-204ENST00000469207 VIRMAQ69YN4 1812 aaKnown RBP16.57■□□□□ 0.24
HDAC3-204ENST00000469207 MRC1P22897 1456 aa16.57■□□□□ 0.24
HDAC3-204ENST00000469207 PRELPP51888 382 aa16.57■□□□□ 0.24
HDAC3-204ENST00000469207 CCDC24Q8N4L8 307 aa16.57■□□□□ 0.24
HDAC3-204ENST00000469207 ZNF496Q96IT1 587 aaPredicted RBP16.57■□□□□ 0.24
HDAC3-204ENST00000469207 KCNQ3O43525 872 aa16.56■□□□□ 0.24
HDAC3-204ENST00000469207 VSIG10Q8N0Z9 540 aa16.56■□□□□ 0.24
HDAC3-204ENST00000469207 DNAJC5GQ8N7S2 189 aa16.56■□□□□ 0.24
HDAC3-204ENST00000469207 PHACTR3Q96KR7 559 aa16.56■□□□□ 0.24
HDAC3-204ENST00000469207 ARFGEF1Q9Y6D6 1849 aa16.56■□□□□ 0.24
HDAC3-204ENST00000469207 AFDNP55196 1824 aaKnown RBP16.55■□□□□ 0.24
HDAC3-204ENST00000469207 EIF5P55010 431 aaKnown RBP16.55■□□□□ 0.24
HDAC3-204ENST00000469207 TTC5Q8N0Z6 440 aa16.55■□□□□ 0.24
HDAC3-204ENST00000469207 TBC1D2BQ9UPU7 963 aa16.55■□□□□ 0.24
HDAC3-204ENST00000469207 ZNF330Q9Y3S2 320 aaPredicted RBP16.55■□□□□ 0.24
HDAC3-204ENST00000469207 CARMIL3Q8ND23 1372 aa16.54■□□□□ 0.24
HDAC3-204ENST00000469207 GNAT3A8MTJ3 354 aa16.54■□□□□ 0.24
HDAC3-204ENST00000469207 APLP1P51693 650 aa16.54■□□□□ 0.24
HDAC3-204ENST00000469207 TBC1D9BQ66K14 1250 aa16.54■□□□□ 0.24
HDAC3-204ENST00000469207 ZNF790Q6PG37 636 aa16.54■□□□□ 0.24
HDAC3-204ENST00000469207 C2CD5Q86YS7 1000 aa16.54■□□□□ 0.24
HDAC3-204ENST00000469207 COL3A1P02461 1466 aaPredicted RBP16.54■□□□□ 0.24
HDAC3-204ENST00000469207 STARD3NLO95772 234 aa16.53■□□□□ 0.24
HDAC3-204ENST00000469207 A1BGP04217 495 aa16.53■□□□□ 0.24
HDAC3-204ENST00000469207 TEFQ10587 303 aa16.53■□□□□ 0.24
HDAC3-204ENST00000469207 PIP4K2AP48426 406 aaPredicted RBP16.52■□□□□ 0.24
HDAC3-204ENST00000469207 C16orf71Q8IYS4 520 aaPredicted RBP16.52■□□□□ 0.24
HDAC3-204ENST00000469207 ZNF219Q9P2Y4 722 aaPredicted RBP16.52■□□□□ 0.24
HDAC3-204ENST00000469207 SBF1O95248 1867 aa16.52■□□□□ 0.23
HDAC3-204ENST00000469207 TTLL6Q8N841 843 aa16.51■□□□□ 0.23
HDAC3-204ENST00000469207 GAS2L2Q8NHY3 880 aa16.51■□□□□ 0.23
HDAC3-204ENST00000469207 RBM46Q8TBY0 533 aaKnown RBP16.51■□□□□ 0.23
HDAC3-204ENST00000469207 HEG1Q9ULI3 1381 aa16.51■□□□□ 0.23
HDAC3-204ENST00000469207 KDM2BQ8NHM5 1336 aa16.5■□□□□ 0.23
HDAC3-204ENST00000469207 PRAMEF22A3QJZ6 481 aa16.5■□□□□ 0.23
HDAC3-204ENST00000469207 H0YIN7 160 aa16.5■□□□□ 0.23
HDAC3-204ENST00000469207 PRKAR2BP31323 418 aa16.5■□□□□ 0.23
HDAC3-204ENST00000469207 UBR2Q8IWV8 1755 aa16.49■□□□□ 0.23
HDAC3-204ENST00000469207 ZNF622Q969S3 477 aaKnown RBP eCLIP16.49■□□□□ 0.23
HDAC3-204ENST00000469207 RSPH6AQ9H0K4 717 aa16.49■□□□□ 0.23
HDAC3-204ENST00000469207 USP16Q9Y5T5 823 aa16.49■□□□□ 0.23
HDAC3-204ENST00000469207 NRXN2Q9P2S2 1712 aa16.48■□□□□ 0.23
HDAC3-204ENST00000469207 A0A087WZG4 1122 aa16.48■□□□□ 0.23
HDAC3-204ENST00000469207 BTBD11A6QL63 1104 aa16.48■□□□□ 0.23
HDAC3-204ENST00000469207 NFKBIEO00221 500 aa16.48■□□□□ 0.23
HDAC3-204ENST00000469207 LMNB1P20700 586 aa16.48■□□□□ 0.23
HDAC3-204ENST00000469207 PRR5LQ6MZQ0 368 aa16.48■□□□□ 0.23
HDAC3-204ENST00000469207 TEX13AQ9BXU3 409 aaPredicted RBP16.48■□□□□ 0.23
HDAC3-204ENST00000469207 NPC1L1Q9UHC9 1359 aa16.48■□□□□ 0.23
HDAC3-204ENST00000469207 C21orf2O43822 256 aa16.47■□□□□ 0.23
HDAC3-204ENST00000469207 IL6STP40189 918 aaPredicted RBP16.47■□□□□ 0.23
HDAC3-204ENST00000469207 DCTN1Q14203 1278 aa16.47■□□□□ 0.23
HDAC3-204ENST00000469207 MCM10Q7L590 875 aa16.47■□□□□ 0.23
HDAC3-204ENST00000469207 FMNL2Q96PY5 1086 aa16.47■□□□□ 0.23
HDAC3-204ENST00000469207 CAMTA2O94983 1202 aa16.46■□□□□ 0.23
HDAC3-204ENST00000469207 GLTPD2A6NH11 291 aa16.45■□□□□ 0.22
HDAC3-204ENST00000469207 FSTL1Q12841 308 aa16.45■□□□□ 0.22
HDAC3-204ENST00000469207 BRIP1Q9BX63 1249 aa16.45■□□□□ 0.22
HDAC3-204ENST00000469207 CEMIPQ8WUJ3 1361 aa16.45■□□□□ 0.22
HDAC3-204ENST00000469207 SIPA1L3O60292 1781 aaPredicted RBP16.44■□□□□ 0.22
HDAC3-204ENST00000469207 POTECB2RU33 542 aa16.44■□□□□ 0.22
HDAC3-204ENST00000469207 U2AF1L5P0DN76 240 aaPredicted RBP16.44■□□□□ 0.22
HDAC3-204ENST00000469207 PPP2R1AP30153 589 aa16.44■□□□□ 0.22
HDAC3-204ENST00000469207 U2AF1Q01081 240 aaKnown RBP eCLIP16.44■□□□□ 0.22
HDAC3-204ENST00000469207 CCDC88AQ3V6T2 1871 aa16.44■□□□□ 0.22
HDAC3-204ENST00000469207 ANKRD31Q8N7Z5 1873 aa16.44■□□□□ 0.22
HDAC3-204ENST00000469207 PDE6BP35913 854 aa16.43■□□□□ 0.22
HDAC3-204ENST00000469207 DZIP3Q86Y13 1208 aaKnown RBP16.43■□□□□ 0.22
HDAC3-204ENST00000469207 KLRG1Q96E93 195 aa16.43■□□□□ 0.22
HDAC3-204ENST00000469207 CFAP53Q96M91 514 aa16.43■□□□□ 0.22
HDAC3-204ENST00000469207 SETDB2Q96T68 719 aa16.43■□□□□ 0.22
HDAC3-204ENST00000469207 MIS18AQ9NYP9 233 aa16.43■□□□□ 0.22
HDAC3-204ENST00000469207 WDR90Q96KV7 1748 aa16.42■□□□□ 0.22
HDAC3-204ENST00000469207 VEGFAP15692 232 aaPredicted RBP16.42■□□□□ 0.22
HDAC3-204ENST00000469207 DLEC1Q9Y238 1755 aa16.41■□□□□ 0.22
HDAC3-204ENST00000469207 NPHP1O15259 732 aa16.41■□□□□ 0.22
HDAC3-204ENST00000469207 NPM2Q86SE8 214 aaKnown RBP16.41■□□□□ 0.22
HDAC3-204ENST00000469207 CNBD1Q8NA66 436 aa16.41■□□□□ 0.22
HDAC3-204ENST00000469207 SMC1BQ8NDV3 1235 aa16.41■□□□□ 0.22
HDAC3-204ENST00000469207 NUDCQ9Y266 331 aa16.41■□□□□ 0.22
HDAC3-204ENST00000469207 NBPF26B4DH59 902 aa16.4■□□□□ 0.22
HDAC3-204ENST00000469207 NBPF10Q6P3W6 841 aaKnown RBP16.4■□□□□ 0.22
HDAC3-204ENST00000469207 NBPF15Q8N660 670 aa16.4■□□□□ 0.22
HDAC3-204ENST00000469207 RTF1Q92541 710 aaKnown RBP16.4■□□□□ 0.22
HDAC3-204ENST00000469207 FAM177BA6PVY3 158 aa16.39■□□□□ 0.21
HDAC3-204ENST00000469207 SNRPA1P09661 255 aaKnown RBP16.39■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 73.8 ms