RNA–Protein interactions for RNA: ENST00000467182.1

COL4A1-202, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 3

Gene COL4A1, Length 593 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-202ENST00000467182 ACSBG1Q96GR2 724 aa16.59■□□□□ 0.25
COL4A1-202ENST00000467182 API5Q9BZZ5 524 aaKnown RBP16.59■□□□□ 0.25
COL4A1-202ENST00000467182 CHPF2Q9P2E5 772 aa16.59■□□□□ 0.25
COL4A1-202ENST00000467182 USP16Q9Y5T5 823 aa16.59■□□□□ 0.25
COL4A1-202ENST00000467182 FLIIQ13045 1269 aa16.58■□□□□ 0.24
COL4A1-202ENST00000467182 PROSER3Q2NL68 480 aa16.58■□□□□ 0.24
COL4A1-202ENST00000467182 CHMP4AQ9BY43 222 aa16.58■□□□□ 0.24
COL4A1-202ENST00000467182 PHAXQ9H814 394 aaKnown RBP16.58■□□□□ 0.24
COL4A1-202ENST00000467182 A0A0G2JS52 829 aa16.57■□□□□ 0.24
COL4A1-202ENST00000467182 MYT1Q01538 1121 aa16.57■□□□□ 0.24
COL4A1-202ENST00000467182 LRP10Q7Z4F1 713 aa16.57■□□□□ 0.24
COL4A1-202ENST00000467182 FTSJ3Q8IY81 847 aaKnown RBP16.57■□□□□ 0.24
COL4A1-202ENST00000467182 SLC4A9Q96Q91 983 aa16.57■□□□□ 0.24
COL4A1-202ENST00000467182 RGS17Q9UGC6 210 aaPredicted RBP16.57■□□□□ 0.24
COL4A1-202ENST00000467182 ZNF831Q5JPB2 1677 aa16.56■□□□□ 0.24
COL4A1-202ENST00000467182 KCNQ2O43526 872 aa16.56■□□□□ 0.24
COL4A1-202ENST00000467182 ANXA1P04083 346 aa16.56■□□□□ 0.24
COL4A1-202ENST00000467182 VSIG10Q8N0Z9 540 aa16.56■□□□□ 0.24
COL4A1-202ENST00000467182 SYTL4Q96C24 671 aaPredicted RBP16.56■□□□□ 0.24
COL4A1-202ENST00000467182 DDX21Q9NR30 783 aaKnown RBP eCLIP16.56■□□□□ 0.24
COL4A1-202ENST00000467182 DBF4Q9UBU7 674 aaPredicted RBP16.56■□□□□ 0.24
COL4A1-202ENST00000467182 BTAF1O14981 1849 aa16.56■□□□□ 0.24
COL4A1-202ENST00000467182 PTCD1O75127 700 aaKnown RBP16.55■□□□□ 0.24
COL4A1-202ENST00000467182 RBM6P78332 1123 aaKnown RBP16.55■□□□□ 0.24
COL4A1-202ENST00000467182 KAT6BQ8WYB5 2073 aa16.55■□□□□ 0.24
COL4A1-202ENST00000467182 PXDNLA1KZ92 1463 aa16.54■□□□□ 0.24
COL4A1-202ENST00000467182 FAM182BQ5T319 152 aa16.54■□□□□ 0.24
COL4A1-202ENST00000467182 INTS3Q68E01 1043 aaKnown RBP16.54■□□□□ 0.24
COL4A1-202ENST00000467182 PTF1AQ7RTS3 328 aa16.54■□□□□ 0.24
COL4A1-202ENST00000467182 RREB1Q92766 1687 aa16.53■□□□□ 0.24
COL4A1-202ENST00000467182 ERBB4Q15303 1308 aa16.53■□□□□ 0.24
COL4A1-202ENST00000467182 B4GALNT3Q6L9W6 998 aa16.53■□□□□ 0.24
COL4A1-202ENST00000467182 ADCY9O60503 1353 aa16.52■□□□□ 0.24
COL4A1-202ENST00000467182 NBPF26B4DH59 902 aa16.52■□□□□ 0.24
COL4A1-202ENST00000467182 F6X3S4 739 aa16.52■□□□□ 0.24
COL4A1-202ENST00000467182 NBPF14Q5TI25 921 aa16.52■□□□□ 0.24
COL4A1-202ENST00000467182 NBPF10Q6P3W6 841 aaKnown RBP16.52■□□□□ 0.24
COL4A1-202ENST00000467182 ITPRIPQ8IWB1 547 aa16.52■□□□□ 0.24
COL4A1-202ENST00000467182 DNAJC10Q8IXB1 793 aa16.52■□□□□ 0.24
COL4A1-202ENST00000467182 NBPF15Q8N660 670 aa16.52■□□□□ 0.24
COL4A1-202ENST00000467182 HYPKQ9NX55 129 aa16.52■□□□□ 0.24
COL4A1-202ENST00000467182 DDX19BQ9UMR2 479 aa16.52■□□□□ 0.24
COL4A1-202ENST00000467182 COL5A3P25940 1745 aaPredicted RBP16.52■□□□□ 0.24
COL4A1-202ENST00000467182 ZBTB7BO15156 539 aaPredicted RBP16.51■□□□□ 0.23
COL4A1-202ENST00000467182 FKBP5Q13451 457 aaPredicted RBP16.51■□□□□ 0.23
COL4A1-202ENST00000467182 AAMPQ13685 434 aa16.51■□□□□ 0.23
COL4A1-202ENST00000467182 RBM42Q9BTD8 480 aaKnown RBP16.51■□□□□ 0.23
COL4A1-202ENST00000467182 PALLDQ8WX93 1383 aa16.51■□□□□ 0.23
COL4A1-202ENST00000467182 LY75O60449 1722 aa16.5■□□□□ 0.23
COL4A1-202ENST00000467182 PIP4K2AP48426 406 aaPredicted RBP16.5■□□□□ 0.23
COL4A1-202ENST00000467182 TEX13AQ9BXU3 409 aaPredicted RBP16.5■□□□□ 0.23
COL4A1-202ENST00000467182 ZBTB40Q9NUA8 1239 aa16.5■□□□□ 0.23
COL4A1-202ENST00000467182 NUP188Q5SRE5 1749 aa16.5■□□□□ 0.23
COL4A1-202ENST00000467182 ARFGEF2Q9Y6D5 1785 aa16.49■□□□□ 0.23
COL4A1-202ENST00000467182 A1BGP04217 495 aa16.49■□□□□ 0.23
COL4A1-202ENST00000467182 MYL6BP14649 208 aa16.49■□□□□ 0.23
COL4A1-202ENST00000467182 POTEAQ6S8J7 498 aa16.49■□□□□ 0.23
COL4A1-202ENST00000467182 KRT27Q7Z3Y8 459 aa16.49■□□□□ 0.23
COL4A1-202ENST00000467182 ATP10DQ9P241 1426 aa16.48■□□□□ 0.23
COL4A1-202ENST00000467182 CYP19A1P11511 503 aaPredicted RBP16.48■□□□□ 0.23
COL4A1-202ENST00000467182 XAGE3Q8WTP9 111 aa16.48■□□□□ 0.23
COL4A1-202ENST00000467182 SMARCC1Q92922 1105 aaPredicted RBP16.48■□□□□ 0.23
COL4A1-202ENST00000467182 CCDC136Q96JN2 1154 aa16.48■□□□□ 0.23
COL4A1-202ENST00000467182 LOC102724428A0A0B4J2F2 783 aa16.47■□□□□ 0.23
COL4A1-202ENST00000467182 PI4KAP2A4QPH2 592 aa16.47■□□□□ 0.23
COL4A1-202ENST00000467182 RXRBP28702 533 aa16.47■□□□□ 0.23
COL4A1-202ENST00000467182 CCT4P50991 539 aaKnown RBP16.47■□□□□ 0.23
COL4A1-202ENST00000467182 SIK1P57059 783 aa16.47■□□□□ 0.23
COL4A1-202ENST00000467182 KSR2Q6VAB6 950 aa16.47■□□□□ 0.23
COL4A1-202ENST00000467182 COPS6Q7L5N1 327 aa16.47■□□□□ 0.23
COL4A1-202ENST00000467182 PI4KAP1Q8N8J0 262 aa16.47■□□□□ 0.23
COL4A1-202ENST00000467182 PCDHB15Q9Y5E8 787 aa16.47■□□□□ 0.23
COL4A1-202ENST00000467182 KDM2BQ8NHM5 1336 aa16.46■□□□□ 0.23
COL4A1-202ENST00000467182 ITPK1Q13572 414 aa16.46■□□□□ 0.23
COL4A1-202ENST00000467182 DNAAF4Q8WXU2 420 aa16.46■□□□□ 0.23
COL4A1-202ENST00000467182 AIMP1Q12904 312 aaKnown RBP16.45■□□□□ 0.22
COL4A1-202ENST00000467182 BEND3Q5T5X7 828 aa16.45■□□□□ 0.22
COL4A1-202ENST00000467182 SLC4A10Q6U841 1118 aa16.45■□□□□ 0.22
COL4A1-202ENST00000467182 FAM196AQ6ZSG2 479 aa16.45■□□□□ 0.22
COL4A1-202ENST00000467182 MAP3K2Q9Y2U5 619 aa16.45■□□□□ 0.22
COL4A1-202ENST00000467182 MYH14Q7Z406 1995 aaKnown RBP16.45■□□□□ 0.22
COL4A1-202ENST00000467182 STARD3NLO95772 234 aa16.44■□□□□ 0.22
COL4A1-202ENST00000467182 ATP6V1AP38606 617 aa16.44■□□□□ 0.22
COL4A1-202ENST00000467182 BCL11BQ9C0K0 894 aaPredicted RBP16.44■□□□□ 0.22
COL4A1-202ENST00000467182 TAF1LQ8IZX4 1826 aa16.44■□□□□ 0.22
COL4A1-202ENST00000467182 IBTKQ9P2D0 1353 aaPredicted RBP16.43■□□□□ 0.22
COL4A1-202ENST00000467182 INTS5Q6P9B9 1019 aaKnown RBP16.43■□□□□ 0.22
COL4A1-202ENST00000467182 MEIS3Q99687 375 aa16.43■□□□□ 0.22
COL4A1-202ENST00000467182 ZBTB1Q9Y2K1 713 aa16.43■□□□□ 0.22
COL4A1-202ENST00000467182 DDX58O95786 925 aaKnown RBP16.42■□□□□ 0.22
COL4A1-202ENST00000467182 IGHDP01880 384 aa16.42■□□□□ 0.22
COL4A1-202ENST00000467182 TTLL7Q6ZT98 887 aa16.42■□□□□ 0.22
COL4A1-202ENST00000467182 CHMP4BQ9H444 224 aaKnown RBP16.42■□□□□ 0.22
COL4A1-202ENST00000467182 ANKRD13DQ6ZTN6 518 aa16.41■□□□□ 0.22
COL4A1-202ENST00000467182 PLBD2Q8NHP8 589 aa16.41■□□□□ 0.22
COL4A1-202ENST00000467182 METTL22Q9BUU2 404 aaPredicted RBP16.41■□□□□ 0.22
COL4A1-202ENST00000467182 SRCIN1Q9C0H9 1055 aa16.41■□□□□ 0.22
COL4A1-202ENST00000467182 AFDNP55196 1824 aaKnown RBP16.4■□□□□ 0.22
COL4A1-202ENST00000467182 TNS1Q9HBL0 1735 aaKnown RBP16.4■□□□□ 0.22
COL4A1-202ENST00000467182 IGKV5-2P06315 115 aa16.4■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms