RNA–Protein interactions for RNA: ENST00000465627.5

UBA3-208, Transcript of ubiquitin like modifier activating enzyme 3, human

TSL 2

Gene UBA3, Length 1,388 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBA3-208	ENST00000465627	LTV1	Q96GA3	475 aa	Predicted RBP	11.55	□□□□□ -0.56
UBA3-208	ENST00000465627	NEUROD2	Q15784	382 aa		11.54	□□□□□ -0.56
UBA3-208	ENST00000465627	MTHFSD	Q2M296	383 aa	Known RBP	11.54	□□□□□ -0.56
UBA3-208	ENST00000465627	PTF1A	Q7RTS3	328 aa		11.54	□□□□□ -0.56
UBA3-208	ENST00000465627	USHBP1	Q8N6Y0	703 aa		11.54	□□□□□ -0.56
UBA3-208	ENST00000465627	FBXO3	Q9UK99	471 aa		11.54	□□□□□ -0.56
UBA3-208	ENST00000465627	ZNF853	P0CG23	659 aa		11.54	□□□□□ -0.56
UBA3-208	ENST00000465627	PRDM11	Q9NQV5	511 aa		11.54	□□□□□ -0.56
UBA3-208	ENST00000465627	CRB1	P82279	1406 aa		11.53	□□□□□ -0.56
UBA3-208	ENST00000465627	WDR17	Q8IZU2	1322 aa		11.53	□□□□□ -0.56
UBA3-208	ENST00000465627	MEGF6	O75095	1541 aa		11.53	□□□□□ -0.56
UBA3-208	ENST00000465627	IFNL1	Q8IU54	200 aa		11.53	□□□□□ -0.56
UBA3-208	ENST00000465627	VIRMA	Q69YN4	1812 aa	Known RBP	11.52	□□□□□ -0.57
UBA3-208	ENST00000465627	ZBTB7C	A1YPR0	619 aa		11.52	□□□□□ -0.57
UBA3-208	ENST00000465627	GRIN3B	O60391	1043 aa		11.52	□□□□□ -0.57
UBA3-208	ENST00000465627	COLQ	Q9Y215	455 aa	Predicted RBP	11.52	□□□□□ -0.57
UBA3-208	ENST00000465627	SPATA31A1	Q5TZJ5	1347 aa		11.51	□□□□□ -0.57
UBA3-208	ENST00000465627	HTATSF1	O43719	755 aa	Known RBP	11.51	□□□□□ -0.57
UBA3-208	ENST00000465627	SLC15A2	Q16348	729 aa		11.51	□□□□□ -0.57
UBA3-208	ENST00000465627	GAS2L2	Q8NHY3	880 aa		11.51	□□□□□ -0.57
UBA3-208	ENST00000465627	STK32B	Q9NY57	414 aa		11.51	□□□□□ -0.57
UBA3-208	ENST00000465627	PARP4	Q9UKK3	1724 aa	Known RBP	11.51	□□□□□ -0.57
UBA3-208	ENST00000465627	CEMIP	Q8WUJ3	1361 aa		11.5	□□□□□ -0.57
UBA3-208	ENST00000465627	SIPA1L3	O60292	1781 aa	Predicted RBP	11.5	□□□□□ -0.57
UBA3-208	ENST00000465627	OVOS2	A0A0G2JMS6	1433 aa		11.5	□□□□□ -0.57
UBA3-208	ENST00000465627	WNK3	Q9BYP7	1800 aa		11.5	□□□□□ -0.57
UBA3-208	ENST00000465627	PLSCR1	O15162	318 aa		11.5	□□□□□ -0.57
UBA3-208	ENST00000465627	NEFM	P07197	916 aa		11.5	□□□□□ -0.57
UBA3-208	ENST00000465627	LMOD3	Q0VAK6	560 aa		11.5	□□□□□ -0.57
UBA3-208	ENST00000465627	THUMPD2	Q9BTF0	503 aa	Known RBP	11.5	□□□□□ -0.57
UBA3-208	ENST00000465627	PDE4DIP	Q5VU43	2346 aa		11.5	□□□□□ -0.57
UBA3-208	ENST00000465627	FANCI	Q9NVI1	1328 aa		11.49	□□□□□ -0.57
UBA3-208	ENST00000465627	TOMM70	O94826	608 aa		11.49	□□□□□ -0.57
UBA3-208	ENST00000465627	TMEM106C	Q9BVX2	250 aa		11.49	□□□□□ -0.57
UBA3-208	ENST00000465627	CARD10	Q9BWT7	1032 aa		11.49	□□□□□ -0.57
UBA3-208	ENST00000465627	BCLAF1	Q9NYF8	920 aa	Known RBP eCLIP	11.49	□□□□□ -0.57	2e-8	■■■□□ 18
UBA3-208	ENST00000465627	SUPT16H	Q9Y5B9	1047 aa	Known RBP	11.49	□□□□□ -0.57
UBA3-208	ENST00000465627	MLLT1	Q03111	559 aa	Predicted RBP	11.48	□□□□□ -0.57
UBA3-208	ENST00000465627	DCTN1	Q14203	1278 aa		11.48	□□□□□ -0.57
UBA3-208	ENST00000465627	IL17RE	Q8NFR9	667 aa		11.48	□□□□□ -0.57
UBA3-208	ENST00000465627	IFT57	Q9NWB7	429 aa		11.48	□□□□□ -0.57
UBA3-208	ENST00000465627	RCAN3	Q9UKA8	241 aa		11.48	□□□□□ -0.57
UBA3-208	ENST00000465627	SCN11A	Q9UI33	1791 aa		11.48	□□□□□ -0.57
UBA3-208	ENST00000465627	GNAT3	A8MTJ3	354 aa		11.47	□□□□□ -0.57
UBA3-208	ENST00000465627	CHL1	O00533	1208 aa		11.47	□□□□□ -0.57
UBA3-208	ENST00000465627	AMOT	Q4VCS5	1084 aa		11.47	□□□□□ -0.57
UBA3-208	ENST00000465627	DCAF8	Q5TAQ9	597 aa		11.47	□□□□□ -0.57
UBA3-208	ENST00000465627	LARP1	Q6PKG0	1096 aa	Known RBP	11.47	□□□□□ -0.57
UBA3-208	ENST00000465627	FAM163A	Q96GL9	167 aa	Predicted RBP	11.47	□□□□□ -0.57
UBA3-208	ENST00000465627	CFAP44	Q96MT7	982 aa		11.47	□□□□□ -0.57
UBA3-208	ENST00000465627	MYH16	Q9H6N6	1097 aa		11.47	□□□□□ -0.57
UBA3-208	ENST00000465627	NLRP2	Q9NX02	1062 aa		11.47	□□□□□ -0.57
UBA3-208	ENST00000465627	COL24A1	Q17RW2	1714 aa		11.47	□□□□□ -0.57
UBA3-208	ENST00000465627	KDM3B	Q7LBC6	1761 aa		11.46	□□□□□ -0.57
UBA3-208	ENST00000465627	CALD1	Q05682	793 aa	Known RBP	11.46	□□□□□ -0.57
UBA3-208	ENST00000465627	PLEKHO1	Q53GL0	409 aa	Predicted RBP	11.46	□□□□□ -0.57
UBA3-208	ENST00000465627	MCM10	Q7L590	875 aa		11.46	□□□□□ -0.57
UBA3-208	ENST00000465627	TSR2	Q969E8	191 aa	Known RBP	11.46	□□□□□ -0.57
UBA3-208	ENST00000465627	USP35	Q9P2H5	1018 aa		11.46	□□□□□ -0.57
UBA3-208	ENST00000465627	GTF3C3	Q9Y5Q9	886 aa		11.46	□□□□□ -0.57
UBA3-208	ENST00000465627	KDM6A	O15550	1401 aa	Predicted RBP	11.46	□□□□□ -0.58
UBA3-208	ENST00000465627	MRC1	P22897	1456 aa		11.45	□□□□□ -0.58
UBA3-208	ENST00000465627	CT47B1	P0C2W7	299 aa	Predicted RBP	11.45	□□□□□ -0.58
UBA3-208	ENST00000465627	GNAI1	P63096	354 aa		11.45	□□□□□ -0.58
UBA3-208	ENST00000465627	AKAP4	Q5JQC9	854 aa		11.45	□□□□□ -0.58
UBA3-208	ENST00000465627	MBIP	Q9NS73	344 aa		11.45	□□□□□ -0.58
UBA3-208	ENST00000465627	CYP27B1	O15528	508 aa		11.43	□□□□□ -0.58
UBA3-208	ENST00000465627	CSB-PGBD3	P0DP91	1061 aa		11.43	□□□□□ -0.58
UBA3-208	ENST00000465627	PLCG2	P16885	1265 aa		11.43	□□□□□ -0.58
UBA3-208	ENST00000465627	TAT	P17735	454 aa	Predicted RBP	11.43	□□□□□ -0.58
UBA3-208	ENST00000465627	RRP1	P56182	461 aa	Known RBP	11.43	□□□□□ -0.58
UBA3-208	ENST00000465627	EXOSC9	Q06265	439 aa	Known RBP	11.43	□□□□□ -0.58
UBA3-208	ENST00000465627	ZNF530	Q6P9A1	599 aa	Predicted RBP	11.43	□□□□□ -0.58
UBA3-208	ENST00000465627	TOM1L2	Q6ZVM7	507 aa		11.43	□□□□□ -0.58
UBA3-208	ENST00000465627	RAPGEF4	Q8WZA2	1011 aa		11.43	□□□□□ -0.58
UBA3-208	ENST00000465627	BABAM1	Q9NWV8	329 aa		11.43	□□□□□ -0.58
UBA3-208	ENST00000465627	PHKG2	P15735	406 aa		11.42	□□□□□ -0.58
UBA3-208	ENST00000465627	RARS	P54136	660 aa	Known RBP	11.42	□□□□□ -0.58
UBA3-208	ENST00000465627	TXNRD1	Q16881	649 aa		11.42	□□□□□ -0.58
UBA3-208	ENST00000465627	LCE2D	Q5TA82	110 aa	Predicted RBP	11.42	□□□□□ -0.58
UBA3-208	ENST00000465627	LGR6	Q9HBX8	967 aa		11.42	□□□□□ -0.58
UBA3-208	ENST00000465627	STRN4	Q9NRL3	753 aa		11.42	□□□□□ -0.58
UBA3-208	ENST00000465627	TOGARAM1	Q9Y4F4	1720 aa		11.42	□□□□□ -0.58
UBA3-208	ENST00000465627	RNMT	O43148	476 aa	Known RBP	11.41	□□□□□ -0.58
UBA3-208	ENST00000465627	PYGB	P11216	843 aa		11.41	□□□□□ -0.58
UBA3-208	ENST00000465627	NKX1-1	Q15270	411 aa	Predicted RBP	11.41	□□□□□ -0.58
UBA3-208	ENST00000465627	NMRK2	Q9NPI5	230 aa		11.41	□□□□□ -0.58
UBA3-208	ENST00000465627	VAMP4	O75379	141 aa		11.41	□□□□□ -0.58
UBA3-208	ENST00000465627	IL2RB	P14784	551 aa		11.41	□□□□□ -0.58
UBA3-208	ENST00000465627	EVA1C	P58658	441 aa		11.41	□□□□□ -0.58
UBA3-208	ENST00000465627	TSPYL6	Q8N831	410 aa		11.41	□□□□□ -0.58
UBA3-208	ENST00000465627	C8orf58	Q8NAV2	365 aa		11.41	□□□□□ -0.58
UBA3-208	ENST00000465627	RTF1	Q92541	710 aa	Known RBP	11.41	□□□□□ -0.58
UBA3-208	ENST00000465627	SPG7	Q9UQ90	795 aa		11.41	□□□□□ -0.58
UBA3-208	ENST00000465627	PAPPA	Q13219	1627 aa		11.4	□□□□□ -0.58
UBA3-208	ENST00000465627	BCAR3	O75815	825 aa		11.4	□□□□□ -0.59
UBA3-208	ENST00000465627	BRPF1	P55201	1214 aa	Predicted RBP	11.4	□□□□□ -0.59
UBA3-208	ENST00000465627	TAF7	Q15545	349 aa	Predicted RBP	11.4	□□□□□ -0.59
UBA3-208	ENST00000465627	ZNF428	Q96B54	188 aa		11.4	□□□□□ -0.59
UBA3-208	ENST00000465627	ABHD8	Q96I13	439 aa		11.4	□□□□□ -0.59

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